BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21200.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890071 jgi|Araly1|890071|Al_scaffold_0007_2057 1546 0.0
> Ahg890071 jgi|Araly1|890071|Al_scaffold_0007_2057
Length=1017
Score = 1546 bits (837), Expect = 0.0
Identities = 962/1022 (94%), Gaps = 10/1022 (1%)
Strand=Plus/Plus
Query 67 ATGGATCCACCATTCAACGAAATATACAATAA-CCTTTTGTATAATCAGATCACAAAGAA 125
||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| |
Sbjct 1 ATGGATCCACCATTCAACGAAATATACAA-AACCCTTTTGTACAATCAGATCACAAACAC 59
Query 126 AGATAA-CGATGTTTCTGAAATACCCTTTAGCTTCTCAGTCACAGCCGTCGTCGAGGAGG 184
||| || |||||| |||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct 60 AGA-AAGAGATGTTCCTGAAATACCCTTTAGCTTCTCCGTCACGGCCGTCTTCGAGGAGG 118
Query 185 TGGAGCTTCCTGTGATTGACGTCAGCCGTTTGATTGATGGAGCCGAGGAGGAGAGAGAGA 244
||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||||
Sbjct 119 TGGAGCTTCCTGTGATTGACGTCAGCCGTCTCATCCATGGAGCCGAGAAGGAGAGAGAGA 178
Query 245 AATGTAAGGAAGCGATTGCGAGAGCTTCGAGGGAGTGGGGATTTTTTCAAGTGATAAACC 304
| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 ACTGTAAGGAAGAGATTGCGAGAGCTTCGAGGGAGTGGGGATTTTTTCAAGTAATAAACC 238
Query 305 ATGGAATATCAATGGATGTGTTGGAGAAGATGAGACAAGAGCAAATTAGGGTCTTTAGAG 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 ATGGAATATCAATGGATGTGTTGGAGAAGATGAGACAAGAACAAATTAGGGTCTTTAGAG 298
Query 365 AGCCTTTTGACAAGAAAAGTAAGTCGGAGAAATTTTCCGCCGGGAGTTACCGGTGGGGAA 424
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 299 AGCCTTTTGACAAGAAAAGTAAGTCGGAGAAATTCTCCGCTGGGAGTTACCGGTGGGGAA 358
Query 425 CGCCGTCAGCCACTTCTATCCGGCAGCTTTCTTGGTCAGAAGCTTTTCATGTTCCCATGA 484
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGCCGTCAGCCACTTGTCTCCGGCAGCTTTCTTGGTCAGAAGCTTTTCATGTTCCCATGA 418
Query 485 CAGATATTTCTGACAACAAGGACTTTACTACTCTCAGCTCAACAATGGAGAAATTTGCTT 544
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 CAGATATTTCTAACAACAAGGACTTTACTACTCTCAGCTCAACAATGGAGAAATTTGCCT 478
Query 545 CGGAATCAGAGGCAT-TAGCATATATGTTGGCAGAGGTTCTTGCAGAAAAATCTGGACAA 603
||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGAAGCGGAGGC-TCTAGCATATATGTTGGCAGAGGTTCTTGCAGAAAAATCTGGACAA 537
Query 604 AATTCAAGTTTCTTCAAAGAAAACTGTGTGAGAAATACATGTTATCTAAGGATGAACCGA 663
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 AAATCAAGTTTTTTCAAAGAAAACTGTGTGAGGAATACATGTTATCTAAGGATGAACCGT 597
Query 664 TATCCACCTTGTCCCAAACCATCGGAGGTGTACGGATTAATGCCACACACGGACAGTGAT 723
||||| |||||||| |||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 598 TATCCGCCTTGTCCGAAACCATCAGAGGTGTACGGATTAATGCCACACACAGATAGTGAT 657
Query 724 TTCCTCACAATCTTGTATCAAGATCAAGTCGGAGGACTCCAACTTATCAAAGACAATAGA 783
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 658 TTCCTCACAATCTTGTATCAAGATCAAGTCGGAGGACTCCAACTCATCAAAGACGATAGA 717
Query 784 TGGATCGCTGTTAAACCTAATCCTAA-AGCTCTCATTATCAATATTGGTGACTTATTTCA 842
|||||||| || ||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 718 TGGATCGCCGTCAAACCTAATTC-AAGAGCTCTCATTATCAATATTGGTGACTTATTTCA 776
Query 843 GGCATGGAGCAATGGCATGTACAAAAGTGTTGAACACCGTGTGATGACGAACCCAAAGGT 902
||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 777 GGCATGGAGTAATGACATGTACAAAAGTGTGGAACACCGTGTGATGACGAATCCAACGGT 836
Query 903 GGAGAGATTCTCAACGGCTTATTTTATGTGTCCATCATACGACGCCGTTATAGAGTGTTC 962
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGAGAGATTCTCAACTGCGTATTTTATGTGTCCATCATACGACGCCGTTATAGAGTGTTC 896
Query 963 AAGTGATCGTCCTGCTTATAGAAATTTCAGCTTCAGAGAATTCAGACAACAAGTTCAAGA 1022
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 897 AAGTGATTGTCCTGCTTATAGAAATTTTAGCTTCAGAGAATTCAGACAACAAGTTCAAGA 956
Query 1023 AGATGTTAAGAAGTTTGGTTTTAAAGTTGGCCTTCCTAGGTTCCTTAATCA-CGTCTACT 1081
||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 957 AGATGTTAAGAAGCTTGGTTTTAAAGTTGGTCTTCCTAGGTTCCTTAATCATC-TCTACT 1015
Query 1082 AA 1083
||
Sbjct 1016 AA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5