BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21215.2
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492760 jgi|Araly1|492760|fgenesh2_kg.7__2193__AT4G21215.2 1890 0.0
> Ahg492760 jgi|Araly1|492760|fgenesh2_kg.7__2193__AT4G21215.2
Length=1279
Score = 1890 bits (1023), Expect = 0.0
Identities = 1151/1208 (95%), Gaps = 28/1208 (2%)
Strand=Plus/Plus
Query 1 GAAAAAATGGGCAACATAAATAAAAAGTAAAAGGGCTCTCTCTCCTTTCTTTCAGTTTCG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAAAAAATGGGCAACATAAATAAAAAGTAAAA-GGCTCTCTCTCCTTTCTTTCAGTTTCG 59
Query 61 ACATTCCCCAGAA--TCTCTCTTCCCTTTTTGTCTCCAACCAAAACAAAACCTTAATCAC 118
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACATTCCCCAGAATCTCTCTCTTCCCTTTTTGTCTCCAACCAAAACAAAACCTTAATCAC 119
Query 119 CTTTCTTCTTCTTCAAAC--AGAGCACAACAGAGACGTTCGTTCCCACTCTGTCTTAATC 176
||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct 120 CTTTCTTCTTCTTTAAACAGAGAGCATAACAGAGACGTTAGTTCCCACTCTGTCTTAATC 179
Query 177 TCCCCTGTTTCAATTC----CTAAATCGATGGAAAACGGTGGAACAATTCCGGGTCAAGA 232
||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 180 TCCTCTGTTTCAATTCTAAAGTAAATCGATGGAAACCGGTGGAACAATTCCGGGTCAAGA 239
Query 233 AATCGGATCAGGGCTTCAAAAACCCGTTAACCCAGATGGGTTTGTGACGATCGATGTTGA 292
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AATCGGATCCGGGTTTCAAAAACCCGTTAACCCAGATGGGTTTGTGACGATCGATGTCGA 299
Query 293 AAGTTTCTCTAATGTCATCCACAAAGACTTCTCTTCTTCTAGTCCAAGAATTACTTTGCA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGTTTCTCTAATGTCATCCACAAAGACTTCTCTTCTTCTAGTCCAAGAATTACTTTGCA 359
Query 353 GAGGAATGTATCGAGGAAAGGGTCTCCAAGAAGCAACAACGAGAGAAAACTCCATTTTGA 412
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGAAATGTATCGAGGAAAGGGTCTCCAAGAAGCAACAACGAGAGAAAACTCCATTTTGA 419
Query 413 CGCAAATGGTAATGACAAGGAGATCTCATTTCCTCAGTCCCCACTTAGAGGGTCAAGCAC 472
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCAAATGGTAATGACAAGGAGACCTCATTTCCTCAGTCCCCACTTAGAGGGTCAAGCAC 479
Query 473 GCCGGAAAAGGCTAGCACCGTGGGCCCCACAGAACATGCAGGCACGGCCACAACCGCTGC 532
|||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 GCCGGAAAAGCCTAACACCGTGGGGCCCACAGAACATGCAGGCACGGCCACAACCGCTGC 539
Query 533 CACAGCTGTTTCAGCCTCGCCGCTTCATCAGATCACCGTTACTACGGCTGCCACGGCCGC 592
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct 540 CACAGCTGTTTCAGCCTCGCAGCTTCATCAGATCACCATTACTACGGCTGCCACGCCCGC 599
Query 593 AGGAAATATGATTACCGACCAAAATAGAGAAAGAAGGTTCGGTTTTTCGAGGAAATCGAG 652
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGAAATGTGATTACCGACCAAAATAGAGAAAGAAGGTTCGGTTTTTCGAGGAAATCGAG 659
Query 653 TTTTAAACGCTCTCACACTTCTTGGATGCTTGATCCGAAGAAAATCGTCCTCTTCTTTGC 712
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 TTTTAAACGCTCTCATACTTCTTGGATGCTTGATCCGAAGAAAATCGTGCTCTTCTTTGC 719
Query 713 AACTTTGTCAAGCATGGGATCAATCTTGTTAATCATATTCACACTCTCGATCAGCAAGTC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AACTTTGTCAAGCATGGGATCAATCTTGTTAATCATATTCACACTCTCGATCAGCAAGTC 779
Query 773 CAATCCCGGAGATATGCCTCTAGACTAATAGTAAACACACGAAGAGCATTATATATAACG 832
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 CAATCCCGGAGATATGCCTTTAGACTAATAGTAAACACAAGAAGAGCATTATATATAACG 839
Query 833 CATATATAT--CATCGACCGACCTAAGTTTGTGGCCATAGAACATGCCACAGTCTCACCG 890
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATATATATATCATCGACCGACCTAAGTTTGTGGCCATAGAACATGCCACAGTCTCACCG 899
Query 891 ACCTACATTTTAAGGAGATGTATCAGACAGAAGAACATTACAAAAAATGAAGAGGGTAAG 950
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACCTACATTTGA-GGAGATGTATCAGACAGAAGAACATTACAAAAAATGAAGAGGGTAAG 958
Query 951 GTTGTGATAATAGTTTTATTTCGTATGAttttttttAAA----TG-aaaa-aaaaGAAGA 1004
||||||||||||||||||||||||||||||||||||||| || |||| |||| || |
Sbjct 959 GTTGTGATAATAGTTTTATTTCGTATGATTTTTTTTAAAAAAATGGAAAACAAAA-AA-A 1016
Query 1005 AGACAACAGTAAGAGAGAGAGAAAGTGGGAAGTGGGCACGCACGAGATCATATGGGAGAT 1064
||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGAAAACAGTAAGAGAGAGA-AA-GTGGGAAGTGGGCACGCACGAGATCATATGGGAGAT 1074
Query 1065 TGGAAAAGAAA-GCTTAAGACAAGAGTTTATGACTATTGTGACAAAGACAGAGAAtcttc 1123
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1075 TGGAAAAGAAAAGCTTAAGACAAGAGTTTACGACTATTGTGACAAAGACAGAGAATCTTC 1134
Query 1124 tcttctgttctttcaaattctttttt-c-tctgttttttctttaaa--tttatttATCGA 1179
||||||||||||| |||||||||||| | |||||||||| | ||| ||||||||||||
Sbjct 1135 TCTTCTGTTCTTTTAAATTCTTTTTTTCCTCTGTTTTTT-TAAAAACATTTATTTATCGA 1193
Query 1180 GTATGTGT 1187
||||||||
Sbjct 1194 GTATGTGT 1201
Score = 117 bits (63), Expect = 2e-25
Identities = 79/86 (92%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1212 TATGTGTACATATCAATTGTGGTGACTGGTGAGTAATTTT-AG-TTTCGTTTGGTTTTAC 1269
||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |
Sbjct 1195 TATGTGTACATATCAATTGTGGTGACTGGTGAGCAATTTTCAGCTTTCGTTTGGTTT-AT 1253
Query 1270 CTTTTCCAAATATATTGAGAAACTCT 1295
||||||||||||||| |||||| |||
Sbjct 1254 CTTTTCCAAATATATAGAGAAAGTCT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5