BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21220.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329479 jgi|Araly1|329479|fgenesh1_pm.C_scaffold_7001706 1284 0.0
Ahg327448 jgi|Araly1|327448|fgenesh1_pm.C_scaffold_6002668 612 2e-174
> Ahg329479 jgi|Araly1|329479|fgenesh1_pm.C_scaffold_7001706
Length=912
Score = 1284 bits (695), Expect = 0.0
Identities = 844/915 (92%), Gaps = 13/915 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTACTCTTTGGAGATTAT-ACTCCAAATCTATATGTAATTCTCTTCAAGGAAT 59
||||||||||||||| ||||||| | |||||| |||||| |||||||| |||| |||||
Sbjct 1 ATGGCGGCTACTCTTGGGAGATT-TGCCTCCAATTCTATACGTAATTCTGTTCAGGGAAT 59
Query 60 CATCTTGAACAAACCCTTTATCCAGAAACAGCTTCTTCTTTCTTCGAGAACTCGAAGTTT 119
|| |||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||
Sbjct 60 CACCTTGAACAAACCCTTTATCCGGAAACAGCTTCTTCTTCCTTGGAGTTCTCGAAGTTT 119
Query 120 ATCTTTTTCCTCAGATTCTCAGTTTGGCTCTGCGACAGCTGAGGTTTGTTCAAATACAGG 179
|||||||| || ||||| |||||||||||||||||| |||||||||| |||||| ||||
Sbjct 120 ATCTTTTTGCTTAGATTATCAGTTTGGCTCTGCGACTGCTGAGGTTTACTCAAATGCAGG 179
Query 180 GT-TAAAGACCGGTGGTGGTATTATTGTTAAG-GAAGGATTTCTTAGATGGGA-AAATGG 236
|| | | ||||||||||| ||||| | || ||||| ||||| |||| ||| ||||||
Sbjct 180 GTCT-GATACCGGTGGTGG---TATTG-TCAGTGAAGGGTTTCTAAGAT-GGAGAAATGG 233
Query 237 AGGAGGGACATGTCATAGCTCGGCTCAAATTTATTCCTCGGCTTTGGTTGAGTTTGGTGC 296
|||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||
Sbjct 234 AGGAGGGACATGTCATAGCTCGGCTCTAATTGATTCTTCAGCTTTGGTTGAGTTTGGTGC 293
Query 297 AGTGGTTCATGAAAAAGCGGTCTTAGGTGCAGAGGTTCATGTAGGATCTGGTACTGTGAT 356
|| |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 294 GGTAGTTCATGAAAAAGCTGTCTTAGGTGCGGAGGTTCATGTAGGATCCGGGACTGTAAT 353
Query 357 TGGACCATCAGTTGACATTGGTCCTTCCACAAGAATCGGATATAATGTTTCAATCAGCAA 416
||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 354 TGGACCATCAGTTCAAATCAGTCCTTCCACAAGAATCGGATATAACGTTTCAATCAGCAA 413
Query 417 CTGTAGTATTGGTGATTCTTGTGTTATCCACAATGGAGTCTGCATAGGTCAAGATGGCTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 414 CTGTAGTATTGGTGATTCTTGTGTTATCCACAATGGAGTCTGCATAGGTCAAGATGG-TT 472
Query 477 T-GGTTTCTACGTTGATGAACATGGAAACATGGTGAAGAAGCCTCAAACTTTAAACGTAA 535
| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 473 TCGGTTTTTACGTTGATGAACATGGAAACATGGTGAAGAAGCCTCAAAAATTAAACGTAA 532
Query 536 AGATAGGGAATCGTGTCGAAATCGGAGCAAATACTTGCATTGATCGAGGCAGCTGGAGAG 595
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 533 AGATAGGGAATCGTGTTGAAATTGGAGTAAATACTTGCATTGATCGAGGCAGCTGGAGAG 592
Query 596 AAACAGTGATCGAAGATGATACTAAGATAGACAATTTAGTGCAGATAGGCCACAATGTGA 655
| || || |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 593 ATACCGTAATCGAAGATGATACTAAGATAGACAACTTAGTGCAGATAGGTCACAATGTGA 652
Query 656 TCATAGGAAAGTGTTGCTTGCTTTGTGGTCAAGTAGGCATCGCTGGTTCAGTAACGATTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 653 TCATAGGAAAGTGTTGCTTGCTTTGTGGTCAAGTAGGCATCGCTGGTTCAGTAACAATTG 712
Query 716 GTGACTATGTGGCTTTAGGAGGACGAGCTGCTGTTCGAGACCATGTCTCCATTGTATCCA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GTGACTATGTGGCTTTAGGAGGACGAGCTGCTGTTCGAGACCATGTCTCCATTGTATCCA 772
Query 776 AGGTTCGACTTGCAGCTAATAGTTGTGTTACTAGAAACATCACTGAACCAGGAGATTTTG 835
||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 773 AGGTTCGACTTGCGGCTAATAGTTGTGTTACTAAAAACATCACTGAGCCAGGAGATTTTG 832
Query 836 GAGGCTTTCCTGCTGTACCAATTCACGAATGGAGAAAGCAGATTGTTCGAGCTCAGATTG 895
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GAGGCTTTCCTGCTGTCCCAATTCACGAATGGAGAAAGCAGATTGTTCGAGCTCAGATTG 892
Query 896 CGAACAAGAGAGAAA 910
|||||||||| |||
Sbjct 893 TGAACAAGAGAAAAA 907
> Ahg327448 jgi|Araly1|327448|fgenesh1_pm.C_scaffold_6002668
Length=849
Score = 612 bits (331), Expect = 2e-174
Identities = 550/651 (84%), Gaps = 34/651 (5%)
Strand=Plus/Plus
Query 212 AAGGATTTCTTAGATGG-GAAAATGGAGGAGGGACATGT--CATAGCTCGG-CTCAAATT 267
|||| ||||| |||||| | |||||||||| ||| |||| |||||||||| | | ||||
Sbjct 188 AAGGGTTTCTAAGATGGCG-AAATGGAGGA-GGA-ATGTACCATAGCTCGGCCGC-AATT 243
Query 268 TATTCCTCGGCTTTGGTTGAGTTTGGTGCAGTGGTTCATGAAAAAGCGGTCTTAGGTGCA 327
||||||||||| ||||||||||||| ||||||||||| || ||||| | || ||| ||
Sbjct 244 GATTCCTCGGCTCTGGTTGAGTTTGGAGCAGTGGTTCACGAGAAAGCTATATTGGGTCCA 303
Query 328 GAGGTTCATGTAGGATCTGGTACTGTGA-TTGGACCATCAGTTGACATTGGTCCTTCCAC 386
|||||| | |||||||| ||||| | ||||||||||||| || || ||| ||| |
Sbjct 304 GAGGTTTGTATAGGATCTAACACTGT-AGTTGGACCATCAGTCGAGATCGGTTCTT---C 359
Query 387 AAGAATCGGATATAATGTTTCAATCAGCAACTGTAGTATTGGTGATTCT-TGTGTTATCC 445
| | | || | ||| |||| |||||||||||||||| | ||||| ||||
Sbjct 360 -----T---ACA-AA-G-----ATCGGCAATTGTAGTATTGGTGATT-TATGTGTCATCC 403
Query 446 ACAATGGAGTCTGCATAGGTCAAGATGGCTTT-GGTTTCTACGTTGATGAACATGGAAAC 504
| |||||||||||||| ||||||||||| ||| ||||| ||||| |||||||| ||||||
Sbjct 404 ATAATGGAGTCTGCATTGGTCAAGATGGATTTGGGTTT-TACGTGGATGAACACGGAAAC 462
Query 505 ATGGTGAAGAAGCCTCAAACTTTAAACGTAAAGATAGGGAATCGTGTCGAAATCGGAGCA 564
|||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 463 ATGGTGAAGAAGCCCCAAACTTTAAATGTGAAGATAGGGAATCGTGTAGAAATCGGAGCA 522
Query 565 AATACTTGCATTGATCGAGGCAGCTGGAGAGAAACAGTGATCGAAGATGATACTAAGATA 624
||||| |||||||| || |||||||||||||| || ||||||| ||||| |||||||||
Sbjct 523 AATACATGCATTGACCGGGGCAGCTGGAGAGATACCGTGATCGGGGATGACACTAAGATA 582
Query 625 GACAATTTAGTGCAGATAGGCCACAATGTGATCATAGGAAAGTGTTGCTTGCTTTGTGGT 684
||||||||||| |||||||| ||||||||||| || || |||||||||||||| |||||
Sbjct 583 GACAATTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAGTGTTGCTTGCTCTGTGGC 642
Query 685 CAAGTAGGCATCGCTGGTTCAGTA-ACGATTGGTGACTATGTGGCTTTAGGAGGACGAGC 743
||||||||||| ||||| |||| | | ||||||||||||||| | ||||||||||| |
Sbjct 643 CAAGTAGGCATAGCTGGATCAGCAGA-GATTGGTGACTATGTAACATTAGGAGGACGGGT 701
Query 744 TGCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCAGCTAATAGTTGTGT 803
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 702 TGCTGTTCGAGACCATGTCTCCATTGTATCTAAGGTTCGACTTGCTGCTAATAGTTGTGT 761
Query 804 TACTAGAAACATCACTGAACCAGGAGATTTTGGAGGCTTTCCTGCTGTACC 854
||||| |||||| || |||||||| |||||||| ||||||||||||| |||
Sbjct 762 TACTAAAAACATTACCGAACCAGGGGATTTTGGCGGCTTTCCTGCTGAACC 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5