BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21230.1 Length=2034 Score E Sequences producing significant alignments: (Bits) Value Ahg492759 jgi|Araly1|492759|fgenesh2_kg.7__2192__AT4G21230.1 3016 0.0 > Ahg492759 jgi|Araly1|492759|fgenesh2_kg.7__2192__AT4G21230.1 Length=2018 Score = 3016 bits (1633), Expect = 0.0 Identities = 1904/2034 (94%), Gaps = 22/2034 (1%) Strand=Plus/Plus Query 1 ATGGCTTCTACTTCAATAATGctttcttc-cttcttctccttcttcttcttGACtttttt 59 ||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||| Sbjct 1 ATGGCTTCTACTTCAATAATGCTTTCTTCTCTT-TTTTCCATCTTCTTCTTGACTTTTTT 59 Query 60 tGTCACTTATGCTCAGCAAAACGTCACCGTTCACACAATTTGCTACTACGATGGAGGTAA 119 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 60 TGTCACTTATGCTCAGCAAAACGTCACCGTTCACACCATTTGCTACTATGATGGAGGCAA 119 Query 120 CTTCACATCCAACACTTCATATTCCCTTAATCTCAACCGTCTGATCTCGTCTTTACCTGA 179 ||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||| Sbjct 120 CTTCACATCCAACTCTTCATATTCTCTTAATCTCAACCGTCTGATCTCTTCTCTACCTGA 179 Query 180 TCTAACTCCAACCATCAACGGCTTCTACAATATCTCCATCAATGGAGAAGTCAACGCCAT 239 |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| || Sbjct 180 TCTAACTCCAACAATCAACGGCTTCTACAACATCTCCACCAATGGAGAAGTCAACGCAAT 239 Query 240 AGCTTTATGCAGAGGAGATGTCAAGCCAAATCAAGATTGCATCAGTTGCATCACCACCGC 299 |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || Sbjct 240 AGCTTTGTGCAGAGGAGATGTCAAACCAAATCAAGATTGCATCACTTGCATCACAACTGC 299 Query 300 CGCAAAGCAGCTCGTAGAGAGCTGTCCAAACATCATCGAAGCCAATATTTGGCTTGAGAA 359 |||||| ||||| ||||| |||||||| |||||||||||||| |||||||||| ||||| Sbjct 300 CGCAAAACAGCTTGTAGAAAGCTGTCCTAACATCATCGAAGCTGATATTTGGCTCGAGAA 359 Query 360 ATGCATGTTTCGTTACACAAGTCGAATTATCTTAGGTCAAATGGAGCCGGTTCCTTTTTC 419 |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 360 ATGCATGTTTCGCTACACAAGTCGAATCATTTTAGGTCAAATGGAGCCGGTTCCTTTTTC 419 Query 420 TTATACATCAAGTAATGTTAGTGTGACAGACAAGGAAGGTTTCAGCAAGGGTTTAGGTGA 479 || |||||||| ||| |||| || ||||||||||||||||||||||||||||||||||| Sbjct 420 CTACACATCAAGCAATCTTAGCGTAACAGACAAGGAAGGTTTCAGCAAGGGTTTAGGTGA 479 Query 480 CCTATTGGATTCATTAGGAGCA-AAAATCGATGCTGCGAATGAGACCAAAGAGGTTAAGT 538 |||||||||||||| |||| | |||||||| ||||||||||||| ||||| |||||| Sbjct 480 GCTATTGGATTCATTGGGAG-AGAAAATCGACACTGCGAATGAGACTGAAGAGATTAAGT 538 Query 539 TTGCAGCAGGAGTGAAAGGAACGATCTACGCGTTGGCTCAGTGTACACCAGATTTGTCTG 598 ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 539 TTGCAGCAGGAGTGACAGGGTCTATCTACGCGTTGGCTCAGTGTACACCAGATTTGTCTG 598 Query 599 AATCAGATTGTAGAATCTGTCTTGCTCAGATCTTTGCTGGAGTTCCCACTTGTTGTGATG 658 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 599 AATCAGATTGTAGAATCTGTCTTGCTCAGATCTTTGCTGGAGTTCCTACTTGTTGTGATG 658 Query 659 GAAAGACAGGTGGATGGTGGACTAATCCAAGTTGCTATTTCAGGTTTGAAGTGTATCCGT 718 |||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| Sbjct 659 GAAAGACAGGTGGATGGTGGACGAATCCAAGTTGTTATTTCAGGTTTGAACAGTATCCGT 718 Query 719 TTTTCGATCTTTCAGTTACTTCAGAACAGA-AGCAACCTCTTTCTTCTCATAATAATAAC 777 ||||||||||||| |||| ||||||||||| | |||||||||||| ||||||| |||||| Sbjct 719 TTTTCGATCTTTCGGTTATTTCAGAACAGATA-CAACCTCTTTCTCCTCATAACAATAAC 777 Query 778 ACCAGAAGAAGTGATCAAGGAAAAAGTAAAGACCGGTCTAAAACTCTCATCTTTGCGGTG 837 ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| Sbjct 778 ACCAGAAGAAGTGATCAAGGAAACAGTAAAGACCGGTCCAAAACACTCATCTTTGCGGTG 837 Query 838 GTTCCCATTGTGGCGATCATATTAGGTCTTGTGTTTCTCTTTATCTACTTAAAGAGGAGG 897 ||||||||||||||||| |||||| | || | ||||||||||||||||||| ||||||| Sbjct 838 GTTCCCATTGTGGCGATTGTATTAGTTTTTATCTTTCTCTTTATCTACTTAATGAGGAGG 897 Query 898 AGGAAAAAGAAGACCCTGAAGGAAAATGCTGAAAATGAATTTGAGAGTACAGACTCATTG 957 | ||| |||||||| |||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 898 AAGAAGAAGAAGACTCTGAAGGATAATGCTGAAAATGAATTTGAGAGTGCAGACTCATTG 957 Query 958 CATTTTGATTTTGAGACCATAAGAGTAGCAACAGATGATTTTTCCTTAACGAATAAGATC 1017 |||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct 958 CATTTTGATTTTGAGACCGTAAGAGTAGCAACAGATGATTTTGCTTTAACGAATAAGATC 1017 Query 1018 GGTGAAGGTGGTTTTGGCGTTGTCTACAAGGGTCATCTCCCAGATGGACTAGAGATAGCT 1077 ||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||| Sbjct 1018 GGTGAAGGTGGTTTTGGGGTTGTCTACAAGGGTCATCTTCCAGATGGGCAAGAGATAGCT 1077 Query 1078 GTGAAAAGGTTATCCATACATTCAGGACAAGGCAATGCAGAGTTTAAGACAGAAGTACTC 1137 |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1078 GTGAAAAGGTTATCGATACACTCAGGACAAGGCAATGCAGAGTTTAAGACTGAAGTACTC 1137 Query 1138 TTAATGACTAAGCTGCAACACAAGAATCTTGTTAAACTCTTTGGTTTCTCCATCAAAGAA 1197 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1138 TTAATGACTAAGCTGCAACACAACAATCTTGTTAAACTCTTTGGTTTCTCCATCAAAGAA 1197 Query 1198 TCTGAAAGACTTCTTGTATATGAGTTTATCCCAAATACAAGTCTTGATCGGTTCTTGTTC 1257 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 TCTGAAAGACTTCTTGTCTATGAGTTTATCCCAAATACAAGTCTTGATCGGTTCTTGTTC 1257 Query 1258 GATCCTATCAAGCAGAAGCAACTAGACTGGGAAAAACGGTACAATATCATCGTAGGAGTT 1317 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1258 GATCCTATCAAGCAGAAGCAACTAGACTGGGAAAAACGGTACAATATCATCGTAGGAATT 1317 Query 1318 TCCCGGGGATTGCTTTACCTACACGAAGGCTCGGAGTTTCCGATAATCCACCGTGATCTC 1377 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1318 TCCCGGGGATTGCTTTACCTACACGAAGGCTCAGAGTTTCCGATAATCCACCGTGATCTC 1377 Query 1378 AAATCCTCCAATGTGCTTTTAGATGAACAAATGCTACCTAAGATCTCAGATTTTGGAATG 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 AAATCCTCCAATGTGCTTTTAGATGAACAAATGCTACCTAAGATCTCAGATTTTGGAATG 1437 Query 1438 GCAAGACAATTCGATTTCGATA-ATACTCAAGCAGTAACAAGAAGAGTTGTTGGAACTTA 1496 |||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| Sbjct 1438 GCAAGACAATTCGATTTCGATAGA-ACTCAAGCAATAACAAGAAGAGTTGTTGGAACTTA 1496 Query 1497 TGGATATATGGCTCCAGAGTATGCAATGCACGGAAGATTCTCAGTGAAAACAGATGTTTA 1556 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 TGGATACATGGCCCCAGAGTATGCAATGCACGGAAGATTCTCAGTGAAAACAGATGTTTA 1556 Query 1557 TAGCTTTGGAGTTCTTGTACTTGAGATCATTACAGGTAAAAGAAACAGTGGATTAGGTCT 1616 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1557 TAGCTTTGGAGTTCTTGTTCTTGAGATCATTACAGGTAAAAGAAACAGTGGATTAGGGCT 1616 Query 1617 TGGTGAAGGAACAGATCTCCCCACATTTGCTTGGCAAAATTGGATTGAAGGAACATCAAT 1676 ||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1617 TGGTGAAGGCACCGATCTCCCAACTTTTGCTTGGCAAAATTGGATTGAAGGAACATCAAT 1676 Query 1677 GGAACTAATAGATCCTGTTCTTCTGCAAACTCACGACAAGAAAGAATCAATGCAATGCTT 1736 ||||||||||||||||||||||||| || || || |||||||| |||||||||||||||| Sbjct 1677 GGAACTAATAGATCCTGTTCTTCTGGAATCTTACAACAAGAAACAATCAATGCAATGCTT 1736 Query 1737 AGAAATTGCTCTGTCTTGTGTTCAAGAGAATCCTACAAAAAGACCAACTATGGATTCAGT 1796 ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1737 TGAAATTGCTCTGTCTTGTGTTCAAGAGAATCCTTCAAAAAGACCAACAATGGATTCAGT 1796 Query 1797 TGTTTCAATGCTTAGCTCTGATTCTGAGTCTCGTC-AGCTTCCAAAACCATCGCAGCCTG 1855 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1797 TGTTTCAATGCTTAGCTCTGATTCTGAGTCTC-TCCAGCTTCCAAAACCATCGCAGCCTG 1855 Query 1856 GTTTCTTCAGAAGATCAGCGTCGTTTTCGATTTCTTTAAATGATGTTTCTCTCACAGATT 1915 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1856 GATTCTTCAGAAGATCAGCGTCGTTTTCGATTTCTTTAAACGATGTTTCTCTCACAGATT 1915 Query 1916 TGTCTGCACGTTAGGTTTTTGCAGTCACACAATGGAGGAAGATTCAATTTTTAAACCCTA 1975 ||||||| ||||| || || |||||||||||| || |||||||||||||||||| Sbjct 1916 TGTCTGCGCGTTAAGTGTT-GCAGTCACACAA---AGT----TTCAATTTTTAAACCCTA 1967 Query 1976 AA-TTTACTTTTATAGGAATGTTTATGTATTCTGCTAAAGTTTAATGCTTTTTT 2028 || |||| |||||||||||||||| | ||||||| |||||||||||||||||| Sbjct 1968 AAATTTAGTTTTATAGGAATGTTT-T--ATTCTGCGAAAGTTTAATGCTTTTTT 2018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76485211960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5