BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21230.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492759 jgi|Araly1|492759|fgenesh2_kg.7__2192__AT4G21230.1 3016 0.0
> Ahg492759 jgi|Araly1|492759|fgenesh2_kg.7__2192__AT4G21230.1
Length=2018
Score = 3016 bits (1633), Expect = 0.0
Identities = 1904/2034 (94%), Gaps = 22/2034 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTACTTCAATAATGctttcttc-cttcttctccttcttcttcttGACtttttt 59
||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||
Sbjct 1 ATGGCTTCTACTTCAATAATGCTTTCTTCTCTT-TTTTCCATCTTCTTCTTGACTTTTTT 59
Query 60 tGTCACTTATGCTCAGCAAAACGTCACCGTTCACACAATTTGCTACTACGATGGAGGTAA 119
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 60 TGTCACTTATGCTCAGCAAAACGTCACCGTTCACACCATTTGCTACTATGATGGAGGCAA 119
Query 120 CTTCACATCCAACACTTCATATTCCCTTAATCTCAACCGTCTGATCTCGTCTTTACCTGA 179
||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 120 CTTCACATCCAACTCTTCATATTCTCTTAATCTCAACCGTCTGATCTCTTCTCTACCTGA 179
Query 180 TCTAACTCCAACCATCAACGGCTTCTACAATATCTCCATCAATGGAGAAGTCAACGCCAT 239
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 180 TCTAACTCCAACAATCAACGGCTTCTACAACATCTCCACCAATGGAGAAGTCAACGCAAT 239
Query 240 AGCTTTATGCAGAGGAGATGTCAAGCCAAATCAAGATTGCATCAGTTGCATCACCACCGC 299
|||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct 240 AGCTTTGTGCAGAGGAGATGTCAAACCAAATCAAGATTGCATCACTTGCATCACAACTGC 299
Query 300 CGCAAAGCAGCTCGTAGAGAGCTGTCCAAACATCATCGAAGCCAATATTTGGCTTGAGAA 359
|||||| ||||| ||||| |||||||| |||||||||||||| |||||||||| |||||
Sbjct 300 CGCAAAACAGCTTGTAGAAAGCTGTCCTAACATCATCGAAGCTGATATTTGGCTCGAGAA 359
Query 360 ATGCATGTTTCGTTACACAAGTCGAATTATCTTAGGTCAAATGGAGCCGGTTCCTTTTTC 419
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 360 ATGCATGTTTCGCTACACAAGTCGAATCATTTTAGGTCAAATGGAGCCGGTTCCTTTTTC 419
Query 420 TTATACATCAAGTAATGTTAGTGTGACAGACAAGGAAGGTTTCAGCAAGGGTTTAGGTGA 479
|| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 420 CTACACATCAAGCAATCTTAGCGTAACAGACAAGGAAGGTTTCAGCAAGGGTTTAGGTGA 479
Query 480 CCTATTGGATTCATTAGGAGCA-AAAATCGATGCTGCGAATGAGACCAAAGAGGTTAAGT 538
|||||||||||||| |||| | |||||||| ||||||||||||| ||||| ||||||
Sbjct 480 GCTATTGGATTCATTGGGAG-AGAAAATCGACACTGCGAATGAGACTGAAGAGATTAAGT 538
Query 539 TTGCAGCAGGAGTGAAAGGAACGATCTACGCGTTGGCTCAGTGTACACCAGATTTGTCTG 598
||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGCAGCAGGAGTGACAGGGTCTATCTACGCGTTGGCTCAGTGTACACCAGATTTGTCTG 598
Query 599 AATCAGATTGTAGAATCTGTCTTGCTCAGATCTTTGCTGGAGTTCCCACTTGTTGTGATG 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 AATCAGATTGTAGAATCTGTCTTGCTCAGATCTTTGCTGGAGTTCCTACTTGTTGTGATG 658
Query 659 GAAAGACAGGTGGATGGTGGACTAATCCAAGTTGCTATTTCAGGTTTGAAGTGTATCCGT 718
|||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 659 GAAAGACAGGTGGATGGTGGACGAATCCAAGTTGTTATTTCAGGTTTGAACAGTATCCGT 718
Query 719 TTTTCGATCTTTCAGTTACTTCAGAACAGA-AGCAACCTCTTTCTTCTCATAATAATAAC 777
||||||||||||| |||| ||||||||||| | |||||||||||| ||||||| ||||||
Sbjct 719 TTTTCGATCTTTCGGTTATTTCAGAACAGATA-CAACCTCTTTCTCCTCATAACAATAAC 777
Query 778 ACCAGAAGAAGTGATCAAGGAAAAAGTAAAGACCGGTCTAAAACTCTCATCTTTGCGGTG 837
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 778 ACCAGAAGAAGTGATCAAGGAAACAGTAAAGACCGGTCCAAAACACTCATCTTTGCGGTG 837
Query 838 GTTCCCATTGTGGCGATCATATTAGGTCTTGTGTTTCTCTTTATCTACTTAAAGAGGAGG 897
||||||||||||||||| |||||| | || | ||||||||||||||||||| |||||||
Sbjct 838 GTTCCCATTGTGGCGATTGTATTAGTTTTTATCTTTCTCTTTATCTACTTAATGAGGAGG 897
Query 898 AGGAAAAAGAAGACCCTGAAGGAAAATGCTGAAAATGAATTTGAGAGTACAGACTCATTG 957
| ||| |||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 898 AAGAAGAAGAAGACTCTGAAGGATAATGCTGAAAATGAATTTGAGAGTGCAGACTCATTG 957
Query 958 CATTTTGATTTTGAGACCATAAGAGTAGCAACAGATGATTTTTCCTTAACGAATAAGATC 1017
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 958 CATTTTGATTTTGAGACCGTAAGAGTAGCAACAGATGATTTTGCTTTAACGAATAAGATC 1017
Query 1018 GGTGAAGGTGGTTTTGGCGTTGTCTACAAGGGTCATCTCCCAGATGGACTAGAGATAGCT 1077
||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||
Sbjct 1018 GGTGAAGGTGGTTTTGGGGTTGTCTACAAGGGTCATCTTCCAGATGGGCAAGAGATAGCT 1077
Query 1078 GTGAAAAGGTTATCCATACATTCAGGACAAGGCAATGCAGAGTTTAAGACAGAAGTACTC 1137
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 GTGAAAAGGTTATCGATACACTCAGGACAAGGCAATGCAGAGTTTAAGACTGAAGTACTC 1137
Query 1138 TTAATGACTAAGCTGCAACACAAGAATCTTGTTAAACTCTTTGGTTTCTCCATCAAAGAA 1197
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTAATGACTAAGCTGCAACACAACAATCTTGTTAAACTCTTTGGTTTCTCCATCAAAGAA 1197
Query 1198 TCTGAAAGACTTCTTGTATATGAGTTTATCCCAAATACAAGTCTTGATCGGTTCTTGTTC 1257
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCTGAAAGACTTCTTGTCTATGAGTTTATCCCAAATACAAGTCTTGATCGGTTCTTGTTC 1257
Query 1258 GATCCTATCAAGCAGAAGCAACTAGACTGGGAAAAACGGTACAATATCATCGTAGGAGTT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 GATCCTATCAAGCAGAAGCAACTAGACTGGGAAAAACGGTACAATATCATCGTAGGAATT 1317
Query 1318 TCCCGGGGATTGCTTTACCTACACGAAGGCTCGGAGTTTCCGATAATCCACCGTGATCTC 1377
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1318 TCCCGGGGATTGCTTTACCTACACGAAGGCTCAGAGTTTCCGATAATCCACCGTGATCTC 1377
Query 1378 AAATCCTCCAATGTGCTTTTAGATGAACAAATGCTACCTAAGATCTCAGATTTTGGAATG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AAATCCTCCAATGTGCTTTTAGATGAACAAATGCTACCTAAGATCTCAGATTTTGGAATG 1437
Query 1438 GCAAGACAATTCGATTTCGATA-ATACTCAAGCAGTAACAAGAAGAGTTGTTGGAACTTA 1496
|||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1438 GCAAGACAATTCGATTTCGATAGA-ACTCAAGCAATAACAAGAAGAGTTGTTGGAACTTA 1496
Query 1497 TGGATATATGGCTCCAGAGTATGCAATGCACGGAAGATTCTCAGTGAAAACAGATGTTTA 1556
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TGGATACATGGCCCCAGAGTATGCAATGCACGGAAGATTCTCAGTGAAAACAGATGTTTA 1556
Query 1557 TAGCTTTGGAGTTCTTGTACTTGAGATCATTACAGGTAAAAGAAACAGTGGATTAGGTCT 1616
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 TAGCTTTGGAGTTCTTGTTCTTGAGATCATTACAGGTAAAAGAAACAGTGGATTAGGGCT 1616
Query 1617 TGGTGAAGGAACAGATCTCCCCACATTTGCTTGGCAAAATTGGATTGAAGGAACATCAAT 1676
||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1617 TGGTGAAGGCACCGATCTCCCAACTTTTGCTTGGCAAAATTGGATTGAAGGAACATCAAT 1676
Query 1677 GGAACTAATAGATCCTGTTCTTCTGCAAACTCACGACAAGAAAGAATCAATGCAATGCTT 1736
||||||||||||||||||||||||| || || || |||||||| ||||||||||||||||
Sbjct 1677 GGAACTAATAGATCCTGTTCTTCTGGAATCTTACAACAAGAAACAATCAATGCAATGCTT 1736
Query 1737 AGAAATTGCTCTGTCTTGTGTTCAAGAGAATCCTACAAAAAGACCAACTATGGATTCAGT 1796
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1737 TGAAATTGCTCTGTCTTGTGTTCAAGAGAATCCTTCAAAAAGACCAACAATGGATTCAGT 1796
Query 1797 TGTTTCAATGCTTAGCTCTGATTCTGAGTCTCGTC-AGCTTCCAAAACCATCGCAGCCTG 1855
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1797 TGTTTCAATGCTTAGCTCTGATTCTGAGTCTC-TCCAGCTTCCAAAACCATCGCAGCCTG 1855
Query 1856 GTTTCTTCAGAAGATCAGCGTCGTTTTCGATTTCTTTAAATGATGTTTCTCTCACAGATT 1915
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1856 GATTCTTCAGAAGATCAGCGTCGTTTTCGATTTCTTTAAACGATGTTTCTCTCACAGATT 1915
Query 1916 TGTCTGCACGTTAGGTTTTTGCAGTCACACAATGGAGGAAGATTCAATTTTTAAACCCTA 1975
||||||| ||||| || || |||||||||||| || ||||||||||||||||||
Sbjct 1916 TGTCTGCGCGTTAAGTGTT-GCAGTCACACAA---AGT----TTCAATTTTTAAACCCTA 1967
Query 1976 AA-TTTACTTTTATAGGAATGTTTATGTATTCTGCTAAAGTTTAATGCTTTTTT 2028
|| |||| |||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 1968 AAATTTAGTTTTATAGGAATGTTT-T--ATTCTGCGAAAGTTTAATGCTTTTTT 2018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5