BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21240.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925049 jgi|Araly1|925049|scaffold_200610.1 582 2e-165
Ahg492758 jgi|Araly1|492758|fgenesh2_kg.7__2191__AT4G21240.1 483 2e-135
> Ahg925049 jgi|Araly1|925049|scaffold_200610.1
Length=1260
Score = 582 bits (315), Expect = 2e-165
Identities = 872/1128 (77%), Gaps = 89/1128 (8%)
Strand=Plus/Plus
Query 61 CAATCTAAAGAAGACGAGAGCCGTCT-TGGTAAGATTT-TCGAGCTGATACCTCTTGATA 118
|||||||||||||| |||| || | | | ||| ||| ||| | |||| |||||||||
Sbjct 71 CAATCTAAAGAAGATGAGA---GT-TGTAGAAAG-TTTCTCGTGATGATTCCTCTTGATC 125
Query 119 TGATTCCTGATATACTCTTGAGACTGCCCGCTAAATCTGCTGTGAGGTTCCGTAT-CGTC 177
|||||| ||| |||||||||||||| || |||||||| | || | ||||||| | |||
Sbjct 126 TGATTCATGAGATACTCTTGAGACTTCCTGCTAAATCCGTTGCAAAGTTCCGT-TGCGTA 184
Query 178 TCGAAGCTATGGTTATCCATCACCACTCGTCCATATTTCATCAGGTCGTTCGCGTTTCCT 237
|| |||||||||| |||||| |||||||| ||| |||||||||||||||||| | ||
Sbjct 185 TCAAAGCTATGGTCATCCATAACCACTCGCCCAGATTTCATCAGGTCGTTCGTGAGTCAG 244
Query 238 TCTTCAACTCGGCTT-TGTCTTATGGCCTGCGTCAA-AGCAAGAGAC-ATGCGTTTATTT 294
|||||||||||| || |||||| | | |||||| || | |||| ||| | |||| | ||
Sbjct 245 TCTTCAACTCGG-TTGTGTCTTTTCGTCTGCGTGAACA-CAAGGGACGA-GCGTCT-TTC 300
Query 295 AT-CTCACTGCAC-CAACATG---A-T--GAC-G--GATCTTA-CGCTCATGTGGACCGT 342
| |||| | | | ||||||| | | ||| | |||||| | |||||||||| |||
Sbjct 301 CTGCTCAAT-CCCTCAACATGAAAATTCGGACAGATCATCTTATC-CTCATGTGGAGCGT 358
Query 343 TGT-GAGATAAAAT-CCCCTAAACATGATTATTA-CAATCCGAGT--TCCGAATCTGTCA 397
| | | || ||||| | || ||| ||||||| | ||| || || |||||||| |||
Sbjct 359 TATCG-GA-AAAATGCTCCAAAATTTGATTATCACCAA--CG-GTACTCCGAATCGGTCC 413
Query 398 ACGGTTTGGT-GTGTTTCGGAGA-CTTT-T-ACAATATCGTAGTTTGGAATCCTTCAATG 453
| || ||| | | |||| ||||| ||| | ||||| |||||||||||||| | |||
Sbjct 414 ATGGCTTGATAG-GTTTGGGAGATTTTTGTGGGAATATTGTAGTTTGGAATCCAACCATG 472
Query 454 AGACAACATGTTACATTACCCG-AACCTAAACCACACAGTACTGTCAGGTACTTTATACG 512
|||||||||||||| ||| ||| |||| ||||| | ||| | || | | ||| |
Sbjct 473 AGACAACATGTTACCTTA-CCGAAACCCGAACCA-AGAGT-C--CCA--T-GTGTAT--G 522
Query 513 TAGCTGTTTAGGATACGATCCGGTCGAGGATAAGTATAAAGTATTGTCCATCTCAGGCTA 572
|||||||||||||||||||||||| |||| ||||||||||| |||| ||||||||| ||
Sbjct 523 TAGCTGTTTAGGATACGATCCGGTTGAGGGCAAGTATAAAGTCTTGTGCATCTCAGGTTA 582
Query 573 CCACAATGGCAACCACGATCCTCTCGTTTTTACATTGGGACCTCAAGAATCATGGAGAGT 632
| || |||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 583 -TA-GAT----ACCAAGATCCTCTTGTTTTTACTTTGGGACCTCAAGAATCATGGAGAGT 636
Query 633 GATCCAAAATAGCCCTTTAGATATCCCTCTA-CCAACCGGAGGATCACGAGTAGGTACAT 691
| ||||||||||||| | || |||||| | | ||| | || | || | || ||| ||
Sbjct 637 GGCCCAAAATAGCCCTAAACATGTCCCTCGATGC-ACCTG-GG-T-ACTAATAAGTAAAT 692
Query 692 GCATCAACGGGCACGTGTACTATGAAGCGCAG-ATACGTTTTAAAGT-AGATGATA-TTT 748
||||||||||| | |||| ||||||||| || |||| |||| ||| | |||||| |||
Sbjct 693 GCATCAACGGGAATTTGTATTATGAAGCG-AGTATACCTTTTGGAGTCA-ATGATAGTTT 750
Query 749 TTAATTTTGAAAATA-TCCTTATGAGCTTCGATGTGAGGTACGAAAAGTTCAACACAATa 807
| || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TGAA-GTTGAAAA-AGTCCTTATGAGCTTCGATGTGAGGTACGAAAAGTTCAACACAATA 808
Query 808 aaaaaaCCAGCTGATCCTACACTT--CGAAACTTCATGCTCAACTACCAAGGAAAATTAG 865
||||||||||||||| | |||| |||| || | ||| ||||| ||||||||||||
Sbjct 809 AAAAAACCAGCTGATGATTTACTTTGCGAATTTT--TCCTCGACTACGAAGGAAAATTAG 866
Query 866 CATGGTTTTGCTCCGAT-TATTCTTCTATAAGGTTTTGGGTTTTAGATGATGGAGACAAA 924
||||| ||||| |||| | | ||| |||||| ||||||||||| || |||| ||| |||
Sbjct 867 CATGGGTTTGCGCCGACGTCT-CTTGTATAAGATTTTGGGTTTTGGAGGATGAAGAGAAA 925
Query 925 CAAGAATGGTCGCTCA-AAAACTTTATTTTGCCTTTTCCAATCTCTCCTGAAATTGACCC 983
|||||||||||||| | |||| ||| || | ||| |||||| | |||| | |||| |
Sbjct 926 CAAGAATGGTCGCTTAGAAAA-TTTCTTCTCCCTATTCCAAAATTTCCTCTACGTGACAC 984
Query 984 CATCTTTGAA-TGTAGAGTGATGCTGACTGGTGTTACTCATGATACTGGTGAGTTCATTT 1042
|||| ||| | | | || ||||| ||| ||||||| |||||||||||||| ||||
Sbjct 985 GATCTGGGAAGTTTCTTGGGA-GCTGAGAGGTATTACTCACGATACTGGTGAGTTTATTT 1043
Query 1043 TTATTA-ATGCGACAATGTGTGATGCATTTTGTGTTTTATATTATGATCCAAAGAGTGGG 1101
||| | ||| |||| | ||| ||| ||| ||| ||||||||||||||||| ||
Sbjct 1044 TTAC-AGATGAAACAACATCTGAAGCAATTTATGTCTTATATTATGATCCAAAAAGAAAC 1102
Query 1102 AGTGAAAGGAGGATCGAGTATGAAGGGATTGGAGACAGA-GAATTCTG 1148
| | ||||||| || | |||||||| ||||||| || ||||||||
Sbjct 1103 CGCGTAAGGAGGGTCAAATATGAAGGTATTGGAGGG-GAAGAATTCTG 1149
> Ahg492758 jgi|Araly1|492758|fgenesh2_kg.7__2191__AT4G21240.1
Length=1020
Score = 483 bits (261), Expect = 2e-135
Identities = 341/377 (90%), Gaps = 15/377 (4%)
Strand=Plus/Plus
Query 398 ACGGTTTGGTGTGTTTCGGAGACTTTTACAATATCGTAGTTTGGAATCCTTCAATGAGAC 457
|||| ||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 275 ACGGCTTGGTATGTTTCGGAGATTTTTACAAGATCATAGTTTGGAATCCTTCAATGAGAC 334
Query 458 AACATGTTACATTACCCGAACCTAAACCACACAGTACTGTCAGGTACTTTATACGTAGCT 517
|||||||||| ||||||||||| ||| | | || | |||| |||||||||||||||||
Sbjct 335 AACATGTTACCTTACCCGAACCCAAA-C-C-TAG-A--GTCATGTACTTTATACGTAGCT 388
Query 518 GTTTAGGATACGATCCGGTCGAGGATAAGTATAAAGTATTGTCCATCTCAGGCTACCACA 577
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 389 GTTTAGGACACGATCCGGTCGAGGATAAGTATAAAGTATTGAGCATCTCAGGCTACCACA 448
Query 578 ATGGCAACCACGATCCTCTCGTTTTTACATTGGGACCTCAAGAATCATGGAGAGTGATCC 637
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 449 AAGGCCACCACGATCCTCTCGTTTTTACATTGGGACCTCAAGAATCATGGAGAGTGGTCC 508
Query 638 AAAATAGCCCTTTAGATATCCCTCTACCAACCG-GAGGATCACGAGTAGGTACATGCATC 696
|||||||||||||| ||||||||||||||||| | ||| | ||||||||| |||||||
Sbjct 509 AAAATAGCCCTTTACATATCCCTCTACCAACCATG-GGA-C--GAGTAGGTATATGCATC 564
Query 697 AACGGGCACGTGTACTATGAAGCGCAGATACGTTTTAAAGTAGATGATATTTTT-AATTT 755
|||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 565 AACGGGCACGTGTATTATGAAGCGGAGATACGTTTTAAAGTAGATGATACTTTTGAATTT 624
Query 756 TGAAA-ATATCCTTATG 771
|||| | |||||||||
Sbjct 625 -GAAAGA-ATCCTTATG 639
Score = 372 bits (201), Expect = 4e-102
Identities = 247/269 (92%), Gaps = 4/269 (1%)
Strand=Plus/Plus
Query 43 GAGAAGG-GAACAAGAAATC--AATCTAAAGAAGACGAGAGCCGTCTTGGTAAGATTTTC 99
||| ||| ||| |||||| | ||||| | ||||||||||| ||| ||||||||||||||
Sbjct 8 GAGGAGGAGAAGAAGAAA-CGGAATCTGAGGAAGACGAGAGTCGTATTGGTAAGATTTTC 66
Query 100 GAGCTGATACCTCTTGATATGATTCCTGATATACTCTTGAGACTGCCCGCTAAATCTGCT 159
|||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 67 GAGCTGATTCCTCTTGATCTGACTCCTGATATACTCTTGAGACTGCCCGCTAAATCTGCT 126
Query 160 GTGAGGTTCCGTATCGTCTCGAAGCTATGGTTATCCATCACCACTCGTCCATATTTCATC 219
||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 127 GTGAGGTTCCGCGTCGCCTCGAAGCTATGGTCATCCATCACCACTCGTCCAGATTTCATC 186
Query 220 AGGTCGTTCGCGTTTCCTTCTTCAACTCGGCTTTGTCTTATGGCCTGCGTCAAAGCAAGA 279
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 187 AGGTCGTTCGCGTTTCATTCTTCAACTCGGCTTTGTCTTATGGCATGCGTCAAAGCAAGA 246
Query 280 GACATGCGTTTATTTATCTCACTGCACCA 308
|||| |||||||||||||||||||| |||
Sbjct 247 GACAAGCGTTTATTTATCTCACTGCGCCA 275
Score = 292 bits (158), Expect = 3e-78
Identities = 194/211 (92%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 837 CTTCATGCTCAACTACCAAGGAAAATTAGCATGGTTTTGCTCCGATTATTCTTCTATAAG 896
||| |||||||||||||| |||||||||||||||||||||| || || ||||||||||||
Sbjct 634 CTT-ATGCTCAACTACCATGGAAAATTAGCATGGTTTTGCTACGGTTTTTCTTCTATAAG 692
Query 897 GTTTTGGGTTTTAGATGATGGAGACAAACAAGAATGGTCGCTCAAAAACTTTATTTTGCC 956
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 693 GTTTTGGGTTTTAGTTGATGGAGACAAACAAGAATGGTCGCTCATAAACTTTGTTTTGCC 752
Query 957 TTTTCCAATCTCTCCTGAAATTGACCCCATCTTTGAATGTAGAGTG-ATGCTGACTGGTG 1015
|||||||| || |||| ||| |||||| |||||||||||||| || || ||||||||||
Sbjct 753 TTTTCCAACCTTTCCTCAAAGTGACCCGATCTTTGAATGTAGTCTGAAT-CTGACTGGTG 811
Query 1016 TTACTCATGATACTGGTGAGTTCATTTTTAT 1046
|||||||||||||||||||||||||||||||
Sbjct 812 TTACTCATGATACTGGTGAGTTCATTTTTAT 842
Score = 235 bits (127), Expect = 5e-61
Identities = 165/183 (90%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 1076 TTT-TATATTATGATCCAAAGAGTGGGAGTGAAAGGAGGATCGAGTATGAAGGGATTGGA 1134
||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 838 TTTATATATTATGATCCAAAGAGAGAGCGTGAAAGGAGGATCGAGTATGAAGGGATTGGA 897
Query 1135 GACAGAGAATTCTGTATTAATACTGGAATTTTGGAGTGCAA--AC-GTTTCACTATTGAT 1191
|||| |||||| || ||| ||| ||||||||||||| || | || |||||||||||
Sbjct 898 GACAAAGAATTGTGGATTCATAATGGAATTTTGGAGAATAACCGCGGTCTCACTATTGAT 957
Query 1192 TGGTTTCCCAATCATAATGAGAGTCTCATGTCTTTGGTTAATGTCCTTAAAAAGGCCGAT 1251
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 TGGTTTCCCAATCATAATGAGAGTCTCATGTCTTTGGTTAATGTCCTTATAAAGGCCGAT 1017
Query 1252 TAG 1254
|||
Sbjct 1018 TAG 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5