BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21250.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492757 jgi|Araly1|492757|fgenesh2_kg.7__2190__AT4G21250.1 2316 0.0
> Ahg492757 jgi|Araly1|492757|fgenesh2_kg.7__2190__AT4G21250.1
Length=1516
Score = 2316 bits (1254), Expect = 0.0
Identities = 1436/1524 (94%), Gaps = 11/1524 (1%)
Strand=Plus/Plus
Query 1 AAACATTTCAAGCTTTGAGGCAAAGAAAATGAAGACCCTATTTGTCCTTTTTCTTCTCCT 60
|||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||
Sbjct 1 AAACATTTCAAGCTTTGAGGCAAAGAAAATGAAGGCCCTTTTTGTCCTTTTTCTCCTCCT 60
Query 61 TCTCTGTGTTTTCGCGATCAACGCAAATCAAGAAGAAGAGAACCTACCACAATCTCATCA 120
||| |||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||
Sbjct 61 TCTATGTGTTTTCGCGATCAACGCGAATCAAGAAGAAGAAAACCAACCACAGTCTCATCA 120
Query 121 TAATCTGCTTCACAAAGTCCAACAATGGAGAACATCTCTGAAAGAATCAAGTGCTGCAGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TAATCTGCTTCACAAAGTCCAACAATGGAGAACATCTCTGAAAGAATCAAGTTCTGCAGA 180
Query 181 ACTCAAGCTATCTTCAGCAATCATTATGGCCGGAGTGTTATGTTTCCTAGCTGCCTTAAT 240
||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 181 ACTGAAGCTATCTTCAGCAATCATTGTGGCCGGAGTGTTATGCTTCCTCGCTGCCTTAAT 240
Query 241 CTCGAGCGCAGGTGGAATCGGCGGTGGAGGTTTATTCATTCCTATCATGACTATAGTTGC 300
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 241 CTCGAGCGCAGGTGGAATCGGCGGTGGAGGTTTATTCATTCCAATCATGACAATAGTTGC 300
Query 301 AGGGGTTGACTTGAAAACCGCGTCAAGCTTCTCTGCTTTTATGGTAACCGGGGGATCAAT 360
||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 301 AGGTCTTGACTTGAAGACCGCTTCAAGCTTCTCTGCTTTTATGGTAACCGGGGGATCGAT 360
Query 361 TGCTAATGTAATCAGCAATCTCTTTGGTGGTAAAGCATTGCTTGATTACGACTTAGCCTT 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCGAATGTAATCAGCAATCTCTTTGGTGGTAAAGCATTGCTTGATTACGACTTAGCCTT 420
Query 421 GCTTCTTGAGCCTTGTATGCTTTTAGGAGTAAGTATTGGTGTTATCTGCAACAGAGTTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTCTTGAGCCTTGTATGCTTTTAGGAGTAAGTATTGGTGTTATCTGCAACAGAGTTTT 480
Query 481 GCCTGAATGGCTCATCACTGTTCTTTTCGCTGTGTTCCTCGCTTGGTCTAGCTTGAAGAC 540
|||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||
Sbjct 481 GCCTGAATGGCTCATCACAGCTCTTTTCGCGGTGTTCCTGGCTTGGTCTAGCTTGAAGAC 540
Query 541 TTGTAGAAGTGGAGTCAAGTTTTGGAAACTTGAGTCTGAGATTGCGAGAG-AATCAGGAC 599
||||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||
Sbjct 541 TTGTAGAAGTGGAGTTAAGTTTTGGAAAATTGAGTCTGAGATTGCGAGAGGAAA-AGGAC 599
Query 600 ATGGGAGGCCCGAGAGAGGACAAGGCCAAATAGAGGAGGAGACTAAGAACCTTAAAGCAC 659
||| ||||||||||| ||||||||| ||||||||||||| | || ||||||||| |
Sbjct 600 ATGAGAGGCCCGAGAAAGGACAAGGTGAAATAGAGGAGGA--C-AA---CCTTAAAGCTC 653
Query 660 CTTTACTTGAAGCTCAAGCGACCAAAAACAAATCAAAGATTCCATGGACGAAACTTGGTG 719
|||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||
Sbjct 654 CTTTACTTGAAGCTCAAGTGAACAGAAATAAATCAAAGATTCCATGGACGAAACTTGGTG 713
Query 720 TCTTGGTTATTGTTTGGGCGTCTTTCTTTGTTATTTATCTTCTCCGTGGAAACAAAGATG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 714 TCTTGGTTATTGTTTGGGCGTCTTTCTTTGTTATTTATCTTCTCCGTGGAAACAAAGACG 773
Query 780 GCAAGGGAATTATAACTATAAAGCCTTGTGGTGTGGAGTATTGGATTCTGCTTTCACTTC 839
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GCAAGGGAATCATAACGATAAAGCCTTGTGGTGTGGAGTATTGGATTCTGCTTTCACTTC 833
Query 840 AGATACCTCTTGCTTTGATTTTCACAAAGTTGGCTCTTTCAAGAACCGAAAGTCGCCAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AGATACCTCTTGCTTTGATTTTCACAAAGTTGGCTCTTTCAAGAACCGAAAGTCGCCAAG 893
Query 900 AACAATCCCCTAACGATCAGAAAAATCAAGAAGGTACAAGACTGGACAAGTCCACGCGGT 959
|||||||||| ||| |||||||||||||||||||||| ||| ||||| |||||| |||||
Sbjct 894 AACAATCCCCGAACAATCAGAAAAATCAAGAAGGTACGAGAATGGACCAGTCCATGCGGT 953
Query 960 TAAAGTTCCCGGCGATGTCCTTTTTAGCCGGTTTATTAGGAGGTATATTTGGTATTGGAG 1019
|||||||||| || ||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 954 TAAAGTTCCCAGCAATGTCATTTTTAGCCGGTTTATTAGGCGGTATATTCGGTATTGGAG 1013
Query 1020 GTGGAATGCTTATAAGCCCTCTTCTTCTTCAATCTGGGATACCACCACAGATAACAGCAG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GTGGAATGCTTATAAGCCCTCTTCTTCTTCAATCTGGGATACCACCACAGATAACAGCAG 1073
Query 1080 CGACAACTTCTTTCATGGTGTTCTTCTCAGCAACAATGTCTGCAGTCCAGTACCTGCTAC 1139
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CGACTACTTCTTTCATGGTCTTCTTCTCAGCAACAATGTCTGCAGTCCAGTACCTGCTAC 1133
Query 1140 TAGGAATGCAAAACACAGACACAGCTTATGTATTTTCCTTTATTTGCTTCCTTGCTTCAC 1199
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1134 TAGGAATGCAAAACACAGACACAGCTTATGTATTTTCATTTATTTGCTTCCTTGCTTCGC 1193
Query 1200 TTCTTGGACTGGTTTTGGTTCAGAAAGCTGTAGCTCAGTTTGGAAGAGCTTCCATTATAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TTCTTGGACTGGTTTTGGTTCAGAAAGCTGTAGCTCAGTTTGGAAGAGCTTCCATTATAG 1253
Query 1260 TTTTCTCGGTTGGAACCGTGATGTCTCTGAGCACAGTCCTTATGACAAGTTTTGGAGCTC 1319
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1254 TGTTCTCGGTTGGAACAGTGATGTCTCTGAGCACAGTCCTTATGACTAGTTTTGGAGCTC 1313
Query 1320 TTGATGTCTGGACTGATTACGTGGCAGGCAAGGACATGGGTTTCAAGCTGCCATGTTAAG 1379
||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1314 TTGATGTGTGGACTGATTATATGGCAGGCAAGGACATGGGTTTCAAATTGCCATGTTAAG 1373
Query 1380 ACATCATGCCTTTGGATCATCGACAATAGAGATCTAAAGAAAATCATCTGTTTCTTTTTA 1439
||||| |||||||||||| ||||||||| |||||| || |||||| ||||| |||
Sbjct 1374 CCATCAAATCTTTGGATCATCAACAATAGAGGTCTAAACAAGATCATCCGTTTCACTTT- 1432
Query 1440 TCATCTTCTTTTT-CTTGTTTG-GCAACAGAGGCTCTGAATTGACTTCTATGTAAGAGGG 1497
|| |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1433 TCGTCTTCTTTTTTCTTGTTTTCGCAACAGAAGCTCTGAATTGACTTCTATGTAAGAGGG 1492
Query 1498 AGATTTAGAGCAATATGGCATTGT 1521
||||||||||||||||||||||||
Sbjct 1493 AGATTTAGAGCAATATGGCATTGT 1516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5