BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21270.1
Length=2849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946067 jgi|Araly1|946067|scaffold_702296.1 3860 0.0
Ahg490168 jgi|Araly1|490168|fgenesh2_kg.6__3302__AT4G05190.1 2071 0.0
> Ahg946067 jgi|Araly1|946067|scaffold_702296.1
Length=2419
Score = 3860 bits (2090), Expect = 0.0
Identities = 2311/2420 (95%), Gaps = 5/2420 (0%)
Strand=Plus/Plus
Query 235 AATTTT-GAGTCTCGGAGATGGCTTCTCGCAACCAGAATCGTCCTCCTCGCAGTCCAAAC 293
|||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 3 AATTTTAGATTCTCGGAGATGGCTTCTCGTAACCAGAACCGTCCTCCTCGCAGTCCAAAC 62
Query 294 GCCAAAAAGGAGGGTCTCGGTGGCATTTCATTTGACAAGCGAAGGAAAGTGGAAACGCAA 353
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 63 GCTAAAAAGGAAGGTCTCGGTGGCATTCCATTTGACAAGCGAAGGAAAGTGGAAACGCAA 122
Query 354 GGAGGTACTGGGAGAAGACAAGCTTTTTCGGCTGTGAATAAACAAGATGTCACGATGAAC 413
| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 123 -G-GG-ACTGGGAGAAGACAAGCGTTTTCGGCTGTGAACAAACAAGATGTCACGATGAAC 179
Query 414 AGCGATGTAGGGAGCATTGAAGAATGTGGTAAAGTTGACTTTACAAAAGATGAAATATTG 473
|||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 180 AGCGATGTGGGGAGCATAGAAGAATGTGGTAAAGTTGAGTTTTCAAAAGATGAAGTATTG 239
Query 474 GCGTTGCTCAGTGAGAGAGCAAAAGCTGGAAAGTTTGATACTAAGGCTAAGATTGAGCAA 533
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 GCGTTGCTCAGTGAGAGAGCAAAAGCTGGAAAGTTTGATACAAAGGCTAAGATTGAGCAA 299
Query 534 ATGACGGATATTATCAAGAGGCTGAAGGTTTGTGTAAAATGGTTCCAACAAGCTGATGAA 593
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 300 ATGACGGATATTATCAAGAGGCTGAAGGTTTGTGTTAAATGGTTTCAACAAGCTGATGAA 359
Query 594 ACCCATGTCCAAGAGAAGGAAAATTTGAAGGTTTCTTTGGAATCTTCAGAACAAAAATAC 653
|||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||
Sbjct 360 ACCCATGTCCAAGAGAAGGAAAGTTTGAGGGTTTCTTTGGAATCTGCGGAACAAAAATAC 419
Query 654 AACCACAAAGAGTTGGAGGCTAGGACAAAAGAGGAAGAGCTACAGGCCACTATCTCAAAG 713
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 420 AACCACAAAGAGTTGGAGGCTAGGACAAAAGAGGAAGAGCTACATGCCACTATATCAAAT 479
Query 714 TTGGAAGAGAATGTAGTGTCACTACATGAAAAGCTTGCAAAGGAGGAGTCTAGTACACAG 773
||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 480 TTGAAAGAGAATGTAGTGTCACTACATGAAAAGCTTGCAAAAGAGGAGTCTTGTAAACAG 539
Query 774 GACGCCATTGAATGTCATAGAAGAGAAAAAGAAGCTAGAGTTGCAGCTGAAAAAGTGCAG 833
|| |||||||||||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 540 GATGCCATTGAATGTCACAGAAGAGAAAAAGATTCTAGAGTTGCAGCTGAGAAAGTGCAG 599
Query 834 GCTTCTCTCGGAGAAGAACTTGATAAAGTTAAGGAAGAGAAAATGGCTGCCAAGCAGAAG 893
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 GCTTCTCTTGGAGAAGAACTTGATAAAGTTAAAGAAGAGAAAATGGCTGCCAAGCAGAAG 659
Query 894 GTGACGTCACTTGAGGATATGTACAAAAGGCTGCAAGAGTACAACACAAGTTTGCAACAA 953
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 GTGACGTCACTTGAGGATATGTACAAAAGGCTACAAGAGTACAACACAAGTTTGCAACAA 719
Query 954 TATAACAGCAAACTTCAGACTGATCTTGAAACAGTTCGAGCTGCACTCACACGTGCTGAA 1013
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATAACAGCAAACTCCAGACTGATCTTGAAACAGTTCGAGCTGCACTCACACGTGCTGAA 779
Query 1014 AAAGAGAAGTCAAGCATCCTGGAGAATCTTAGTACACTTAGGGGACACAGCAAGTCGCTG 1073
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 780 AAAGAGAAGTCAAGCATCCTTGAGAATCTTAGTACACTAAGGGGTCACAGCAAGTCGCTG 839
Query 1074 CAGGATCAACTATCTTCAAGCAGAGTGTTGCAAGATGACGCTATAAAACAGAAGGATTCA 1133
||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 CAGGATCAATTAGCTTCAAGCAGAGTTTTGCAAGATGACGCTATAAAACAGAAGGATTCA 899
Query 1134 TTGCTTTCGGAAGTTACTAATCTTCGGAATGAGCTCCAACAAGTCCGGGATGACCGTGAT 1193
||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 900 TTGCTTTTGGAAGTTACTAATCTCCGGAATGAGCTCCAACAAGTTAGGGATGACCGTGAT 959
Query 1194 CGCCAAGTTGTACAGTCACAGAAGCTGTCTGAGGAGATCAGGAAGTACCAGGAGAATGTC 1253
||||||||||| ||||||||||||||| ||||||| ||| |||| |||||||||||||||
Sbjct 960 CGCCAAGTTGTTCAGTCACAGAAGCTGGCTGAGGAAATCGGGAAATACCAGGAGAATGTC 1019
Query 1254 GGAAAGTCATCGCAAGAGCTAGACATCTTGACAGCAAAATCAGGATCGTTGGAGGAGACA 1313
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1020 GGAAAGTCATCGCAAGAGCTAGACATCTTGATAGCAAAATCAGGATCGTTGGAGGAGACA 1079
Query 1314 TGTTCGTTGCAGAAGGAGCGTTTAAATATGTTAGAGCAGCAATTAGCAATCGCCAATGAA 1373
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 TGTTCGTTGCAAAAGGAGCGTATAAATATGTTAGAGCAGCAATTAGCAATCGCCAGTGAA 1139
Query 1374 AGGCAAAAGATGGCAGATGCATCAGTATCTCTTACTAGGACAGAGTTTGAGGAGCAGAAG 1433
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1140 AGGCAAAAGATGGCAGATGCATCAGTATCTCTTACTAGAACAGAGTTTGAGGAGCAGAAG 1199
Query 1434 CATCTACTGTGCGAACTACAAGACCGGCTTGCAGACATGGAGCATCAACTGTGTGAGGGA 1493
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1200 CATCTACTGTGTGAACTACAAGACCGCCTTGCAGACATGGAGCATCAACTGTGTGAGGCA 1259
Query 1494 GAGTTATTGCGGAAGAAGCTTCATAACACTATTCTTGAATTAAAAGGAAATATACGTGTC 1553
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1260 GAGTTATTGCGGAAGAAGCTTCATAACACTATTCTTGAACTAAAAGGAAATATACGGGTC 1319
Query 1554 TTCTGCCGAGTGCGTCCCTTGTTACCAGACGATGGAGGACGACATGAAGCAACTGTAATA 1613
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1320 TTCTGCCGAGTGCGCCCCTTGTTACCAGACGATGGAGGACGACATGAAGCAACTGTGATA 1379
Query 1614 GCCTATCCTACTTCAACAGAAGCCCAAGGAAGAGGTGTTGATTTGGTTCAGAGTGGGAAC 1673
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1380 GCCTATCCTACTTCAACAGAAGCTCGAGGAAGAGGTGTTGATTTGGTTCAGAGTGGGAAC 1439
Query 1674 AAACATCCTTTCACCTTTGACAAAGTTTTCAACCACGAAGCTTCCCAGGAGGAAGTATTC 1733
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1440 AAACATCCTTTCACCTTTGACAAAGTTTTCAATCACGAAGCTTCCCAGGAGGAAGTATTC 1499
Query 1734 TTTGAAATATCTCAACTTGTACAGAGTGCATTGGATGGCTATAAGGTTTGTATCTTTGCC 1793
||||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1500 TTTGAAATATCACAACTAGTACAGAGCGCACTGGATGGCTATAAGGTTTGTATCTTTGCC 1559
Query 1794 TACGGTCAGACCGGTTCTGGAAAGACCTACACCATGATGGGCCGGCCTGAGGCGCCAGAT 1853
||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 1560 TACGGTCAGACAGGTTCTGGCAAGACCTACACCATGATGGGCAGGCCTGAGACGCCAGAA 1619
Query 1854 CAGAAAGGACTGATCCCTCGATCACTTGAACAGATATTCCAAGCCAGTCAATCACTCGGT 1913
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1620 CAGAAAGGTCTGATCCCTCGATCACTTGAACAGATATTCCAAGCCAGTCAATCTCTCGGT 1679
Query 1914 GCACAAGGCTGGAAGTACAAGATGCAGGTATCGATGTTGGAGATATATAATGAGACCATC 1973
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1680 GCACAAGGCTGGAAGTACAAAATGCAGGTATCAATGTTGGAGATATATAATGAGACCATC 1739
Query 1974 AGAGATTTGCTCTCTACAAATCGAACAACTTCTATGGACTTGGTGCGAGCAGACAGTGGC 2033
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1740 AGAGATTTGCTCTCTACAAATCGAACAACTTCTATGGAGTTGGTGCGAGCAGACAGTGGC 1799
Query 2034 ACCTCAGGAAAGCAATATACAATCACTCATGACGTAAATGGACACACCCATGTCAGCGAC 2093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 ACCTCAGGAAAGCAATATACAATCACTCATGACGTAAATGGACACACCCATGTCAGCGAC 1859
Query 2094 TTGACCATATTTGATGTGTGCAGCGTTGGAAAGATATCCTCACTCTTGCAGCAGGCTGCT 2153
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1860 TTGACCATATTTGATGTGTGCAGCATTGGAAAGATATCCTCACTCTTGCAGCAGGCTGCT 1919
Query 2154 CAGAGCAGGTCAGTAGGGAAGACTCAAATGAATGAGCAATCATCTAGAAGTCATTTCGTG 2213
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1920 CAGAGCAGGTCAGTAGGGAAGACTCAAATGAATGAGCAATCATCCAGAAGTCATTTTGTG 1979
Query 2214 TTTACTATGAGGATTTCAGGTGTTAATGAGAGCACCGAACAGCAGGTACAAGGTGTTCTC 2273
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1980 TTTACTATGCGGATTTCGGGTGTTAATGAGAGCACTGAACAGCAGGTACAAGGGGTTCTC 2039
Query 2274 AACCTAATAGATCTTGCTGGAAGCGAGAGGCTATCGAAGAGTGGGGCAACTGGAGATCGA 2333
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2040 AACCTAATCGATCTTGCTGGAAGTGAGAGGCTATCAAAGAGTGGGGCAACTGGAGATCGA 2099
Query 2334 TTAAAAGAGACACAGGCTATAAACAAAAGTTTATCAGCTTTGAGTGATGTAATATTTGCA 2393
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2100 TTAAAAGAGACACAGGCTATAAACAAAAGTTTATCAGCTTTGAGTGATGTTATCTTTGCA 2159
Query 2394 TTGGCTAAGAAAGAAGATCATGTTCCTTTCAGAAACTCAAAGCTAACATATCTGCTCCAG 2453
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2160 TTGGCTAAGAAAGAAGATCATGTTCCTTTCAGAAACTCAAAGCTAACATATCTGCTTCAG 2219
Query 2454 CCTTGCCTAGGAGGAGATTCAAAGACCTTGATGTTCGTAAACATTTCGCCTGACCCAACT 2513
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2220 CCTTGCCTAGGAGGAGATTCGAAGACCTTGATGTTCGTAAACATTTCGCCTGACCCATCT 2279
Query 2514 TCTGCTGGAGAGTCTCTTTGCTCACTCCGGTTTGCTGCTAGAGTAAATGCGTGTGAAATT 2573
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2280 TCCGCTGGAGAGTCTCTTTGCTCTCTCCGGTTTGCTGCTAGAGTGAATGCGTGTGAAATT 2339
Query 2574 GGTATACCTAGGCGACAAACTTCAACGAAGCTCCTTGACTCTCGCTTAAGCTATGGCTAA 2633
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2340 GGTATACCTAGGAGACAAACTTCAACAAAGCTCCTTGACTCTCGCTTGAGCTATGGCTAA 2399
Query 2634 AAATGTTCAGAAGA-TCTGC 2652
|| |||||| || | |||||
Sbjct 2400 AACTGTTCATAAAAATCTGC 2419
> Ahg490168 jgi|Araly1|490168|fgenesh2_kg.6__3302__AT4G05190.1
Length=3018
Score = 2071 bits (1121), Expect = 0.0
Identities = 1946/2339 (83%), Gaps = 77/2339 (3%)
Strand=Plus/Plus
Query 334 GAAGGAAAGTGGAAACGCAAGGAGGTACTGGGAGAAGACAAGCT-TTTTCGGCTGTGAAT 392
||||||||| |||||||| | || ||| || |||||||||| | |||||| | |||||
Sbjct 227 GAAGGAAAGCGGAAACGC-A--AGTTACCGGAAGAAGACAAG-TGTTTTCGACAGTGAAC 282
Query 393 AAACAAGATGTCAC-GATGAACAGCGATGTAGGG-AGCATTGAAGAATGTGGTAAAGTTG 450
| ||||||||| || | |||||||||||| ||| || | || || |||||||||||||
Sbjct 283 AGACAAGATGTTACTG-CGAACAGCGATGT-GGGCAGTACAGAGGAGTGTGGTAAAGTTG 340
Query 451 ACTTTACAAAAGATGAAATATTGGCGTTGCTCAGTGAGAGAGCAAAAGCTGGAAAGTTTG 510
| ||||||||||||||| | ||||| ||||| | |||||||| ||||||||||| ||||
Sbjct 341 AATTTACAAAAGATGAAGTCTTGGCTTTGCTTAACGAGAGAGCTAAAGCTGGAAAATTTG 400
Query 511 ATACTAAGGCTAAGATTGAGCAAATGACGGATATTATCAAGAGGCTGAAGGTTTGTGTAA 570
|||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 401 ATACCAAGGGTAAGATTGAGCAAATGACGGATATTATCAAGAAGCTTAAGGTTTGTGTTA 460
Query 571 AATGGTTCCAACAAGCT-GATGAAACCCATGTCCAAGAGAAGGAAAAT-TTGAAGGT-TT 627
|||||||||||||| | || ||||| ||||| || |||||||||||| || | | ||
Sbjct 461 GATGGTTCCAACAAG-TGGACGAAACTCATGTTCAGGAGAAGGAAAATCTT--TGTTCTT 517
Query 628 CT-TTGGAATCTTCAGAACAAAA-ATACAACCACAAAGAGTTGGAGGCTAGGACAAAAGA 685
|| || ||||| ||| | |||| |||| | ||||||||||| || | ||| || ||
Sbjct 518 CTCTT-CAATCTGCAG-AGAAAAGATACTGTGATAAAGAGTTGGATGCGAAGACCAACGA 575
Query 686 GGAAGAGCTACAGGCCACTATCTCAAAGTTGGAA-GAGAATGTAGTGTCACTACATGAAA 744
||||| |||||| || ||||| || || | ||| ||||| ||| ||||| || ||||
Sbjct 576 GGAAGTGCTACAAGCAACTATAGCAGAGAT-GAAGGAGAAAATAGCATCACTTCAGGAAA 634
Query 745 AGCTTG-CAAAGGAGGAGTCT-AGTACACAGGACGCCATTGAATGTCATAGAAGAGAAAA 802
|| ||| | |||||||||| | |||| | ||| || |||||| | | |||||||||||
Sbjct 635 AG-TTGTCCAAGGAGGAGT-TGAGTAAATTGGAAGCAATTGAAAATTACAGAAGAGAAAA 692
Query 803 AGAA-GCTAGAGTTGCAGCTGAAAAAG-TGCAGGCTTCTCT-CGGAGAAGAACTTGATAA 859
|||| | ||||| |||||||| | ||| | || | |||||| | |||| || ||||| ||
Sbjct 693 AGAATG-TAGAGATGCAGCTG-AGAAGCTTCAAGTTTCTCTAC-GAGATGAGCTTGACAA 749
Query 860 AGTTA-AGGAAGAGAAAATGGCTGCCAAGCAGAAGGTGACGTCACTTGAGGATATGTACA 918
||||| | ||||||||||||||||| || |||||||||| ||| ||||| ||||||||||
Sbjct 750 AGTTACA-GAAGAGAAAATGGCTGCGAAACAGAAGGTGATGTCCCTTGAAGATATGTACA 808
Query 919 AAAGGCTGCAAGAGTACAACACAAGTTTGCAACAATATAACAGC-AAACTTCAGACTGAT 977
|||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||
Sbjct 809 AAAGGCTGCAAGAGTACAACACAAGTCTGCAACAATATAACA-CAAAACTCCAGACTGAT 867
Query 978 CTTGAAACAGTTCGAGCTGCAC-TCACACGTGCTGAAAAAGAGAAGTCAAGCATCCTGGA 1036
|||||| ||||||||| || | | || ||||||||||| || |||||||| || |||||
Sbjct 868 CTTGAAGCAGTTCGAGAGGCGCAT-ACTCGTGCTGAAAAGGAAAAGTCAAGTATACTGGA 926
Query 1037 GAATCTTAGTACACTTAGGGGACACAGCAAGTCGCTGCAGGATCAACTATC-TTCAAGCA 1095
|||||||| ||| || || || ||||| || || || || |||||| || | || |||
Sbjct 927 GAATCTTACTACCCTAAGAGGTCACAGTAAATCACTACAAGATCAATTAGCATT-GAGCC 985
Query 1096 GAGTGTT-GCAAGATGACGCTATAAAACAGAAGGATTCATTGCTT--TCGGAAGT-TACT 1151
| || || |||||||| || ||||||| ||||| |||||| || | |||||| ||
Sbjct 986 GGGT-TTCACAAGATGAAGCGGTAAAACAAAAGGAGTCATTG-TTGAT-GGAAGTCAAC- 1041
Query 1152 AATCTTCGGAATGAGCTCCAACAAGTCCGGGATGACCGTGATCGCCAAGTTGTACAGTCA 1211
|| ||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1042 AACCTTCGGAGTGAGCTCCAACAAGTCCGTGATGATCGTGATCGCCAGGTTGTACAGTCG 1101
Query 1212 CAGAAGCTGTCTGAGGAGATCA-GGAAGTACCAGGAGAATGTCGGAAAGTCATCGCAAGA 1270
|| |||||| |||| ||||| | || ||| |||||| ||| ||||||||||| || ||
Sbjct 1102 CAAAAGCTGGCTGATGAGAT-ACTGATGTATAAGGAGAGTGTTGGAAAGTCATCTCATGA 1160
Query 1271 GCTAGACA-TCTTGACAGCAAAATCAGGATCGTTGGAGGAGACATGTTCGTTGCAGAAGG 1329
| | |||| || ||| |||||||||||||| |||||||| ||||||||||| || ||||
Sbjct 1161 GTTGGACATTC-TGATTGCAAAATCAGGATCTTTGGAGGAAACATGTTCGTTACAAAAGG 1219
Query 1330 AGCGTTTAAATATGTTAGAGCAGCAATTAGCAATCGCCAATGAAAGGCAAAAGATGGCAG 1389
||||| |||| ||||| |||||| ||||||| | || || |||| || ||||||| ||
Sbjct 1220 AGCGTATAAAAATGTTGGAGCAGGAATTAGCTTTTGCTAAGGAAAAGCTTAAGATGGTAG 1279
Query 1390 ATGCATC-AGTATCTCTTACTAGGACAGAGTTTGAGGAGCAGAAGCATCTACTGTGC--G 1446
||||||| | | |||| ||||| ||||||||||||||||||||| || | || |||| |
Sbjct 1280 ATGCATCTA-TGTCTCATACTATGACAGAGTTTGAGGAGCAGAAACAAC-AC-GTGCATG 1336
Query 1447 AACTACAAGACCGGCTTGCAGACATGGAGCATCAACTGTGTGAGGGAGAGTTATTGCGGA 1506
|||| ||||| || |||||||| | ||||| |||||| | ||| |||||||| || ||||
Sbjct 1337 AACTGCAAGATCGCCTTGCAGATACGGAGCGTCAACTTTATGAAGGAGAGTTGTTACGGA 1396
Query 1507 AGAAGCTTCATAACACTATTCTTGAATTAAAAGGAAATATACGTGTCTTCTGCCGAGTGC 1566
|||||||||||||||| ||||||||| | |||||||| ||||| || |||||||||||||
Sbjct 1397 AGAAGCTTCATAACACCATTCTTGAACTCAAAGGAAACATACGCGTGTTCTGCCGAGTGC 1456
Query 1567 GTCCC-TTGTTACCAGACGATGGAGGACGACATGAAG-CAACTGTAATAGCCTATCCTAC 1624
| ||| ||| ||||||| ||||||||||| || || | || | || || |||||||| ||
Sbjct 1457 G-CCCATTGCTACCAGATGATGGAGGACGCCAAGAGGCCAGC-GTTATTGCCTATCCCAC 1514
Query 1625 TTCAACAGAAGCCCAAGGAAGAGGTGTTGAT-TTGGTTCAGAGTGGGAACAAACATCCTT 1683
||||| ||| | | || ||||| ||||| || || || ||||| ||||| |||||||
Sbjct 1515 ATCAACTGAATCTCTTGGTAGAGGCATTGATGTT-GTCCAAAGTGGTAACAAGCATCCTT 1573
Query 1684 TCACCTTTGACAAAGTTTTCAACCACGAAGCTTCCCAGGAGGAAGTATTCTTTGAAATAT 1743
||||||| ||||| || ||| |||| | |||||| |||||||||||||||||||||||||
Sbjct 1574 TCACCTTCGACAAGGTCTTCGACCATGGAGCTTCTCAGGAGGAAGTATTCTTTGAAATAT 1633
Query 1744 CTCAACTTGTACAGAGTGCATTGGATGGCTATAAGGTTTGTATCTTTGCCTACGGTCAGA 1803
|||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 1634 CTCAACTTGTGCAGAGCGCATTAGATGGCTACAAGGTTTGTATTTTTGCCTACGGTCAGA 1693
Query 1804 CCGGTTCTGG-AAAGACCTACACCATGATGGGCCGGCCTGAGGCGCCAGATCAGAAAGGA 1862
| |||||||| ||| |||||||| ||||||||| ||||||| | ||||| |||||||||
Sbjct 1694 CAGGTTCTGGCAAA-ACCTACACAATGATGGGCAGGCCTGAAACACCAGAACAGAAAGGA 1752
Query 1863 CTGATCCCTCGATCACTTGAACAGATATTCCAAGCCAGTCAATCACTCGGTGCACAAGGC 1922
||||||||||||||||||||||| |||||| || |||| ||| || || ||||||||
Sbjct 1753 CTGATCCCTCGATCACTTGAACAAATATTCAAAACCAGCCAAAGTCTTAGTACACAAGGC 1812
Query 1923 TGGAAGTACAAGATGCAGGTATCGATGTTGGAGATATATAATGAGACCATCAGAGATTTG 1982
||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||
Sbjct 1813 TGGAAATACAAGATGCAGGTATCCATGTTGGAGATATATAACGAGTCCATCAGGGATTTG 1872
Query 1983 CTCTCTACAAATCGAACAACTT-CTATGGACT-TGGTGCGAGCAGACAGTGGCACCTCAG 2040
| |||||||| ||||||| || |||| || | | ||||||||||||||| ||||||| |
Sbjct 1873 TTGTCTACAAACCGAACAA-TTGCTATAGAATCT-GTGCGAGCAGACAGTAGCACCTCTG 1930
Query 2041 GAAAG-CAATATACAATCACTCATGACGTAAATGGACACACCCATGTCAGCGACTTGACC 2099
| ||| |||||||||||||| ||||| || |||||| |||| ||||| || ||| ||||
Sbjct 1931 G-AAGACAATATACAATCACACATGATGTTAATGGAAACACTCATGTTAGTGACCTGACA 1989
Query 2100 ATATTTGATGTGTGCAGCGTTGGA-AAGATATCCTCACTCTTGCAGCAGGCTGCTCAGAG 2158
||| | ||||| |||||| ||||| || || |||||| | ||||| ||||||||||||||
Sbjct 1990 ATAGTAGATGTATGCAGCATTGGACAA-ATTTCCTCATTATTGCAACAGGCTGCTCAGAG 2048
Query 2159 CAGGTCAGTAGGGAAGACTCAAATGAATGAGCAATCATCTAGAAGTCATTTCGTGTTTAC 2218
|||||| || || ||||| || |||||||| |||||||| ||||||||||| ||||||||
Sbjct 2049 CAGGTCTGTTGGTAAGACCCATATGAATGAACAATCATCAAGAAGTCATTTTGTGTTTAC 2108
Query 2219 TATGAGGATTTCAGGTGTTAATGAGAGCACCGAACAGCAGGTACAAGGTGTTCTCAACCT 2278
| | |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2109 TCTTAGGATTTCTGGTGTGAATGAGAGCACTGAACAGCAGGTACAAGGTGTTCTTAACCT 2168
Query 2279 AATAGATCTTGCTGGAAGCGAGAGGCTATCGAAG-AGTGGGGCAACTGGAGATCGATTAA 2337
||| |||||||||||||| ||| | || || ||| || |||||||| ||||| |||||||
Sbjct 2169 AATTGATCTTGCTGGAAGTGAGCGACTTTC-AAGAAGCGGGGCAACCGGAGACCGATTAA 2227
Query 2338 AAGAGACACAGGCTATAAACAAAAGTTTATCAGCTTTGAGTGATGTAATATTTGCATTGG 2397
| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 2228 AGGAGACACAGGCTATAAACAAAAGTTTGTCTGCTTTGAGTGATGTTATATTTGCATTGG 2287
Query 2398 CTAAGAAAGAAGATCATGTTCCTTTCAGAAACTCAAAGCTAACATATCTGCTCCAGCCTT 2457
| |||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct 2288 CAAAGAAAGAGGATCATGTACCTTTCAGAAACTCAAAGTTAACATATCTGCTCCAGCCAT 2347
Query 2458 GCCTAGGAGGAGATTCAAAGACCTTGATGTTCGTAAACATTTCGCCTGACCCAACTTCTG 2517
| ||||||| || ||||||||||| ||||| || ||||| || ||||| ||| ||||
Sbjct 2348 GTTTAGGAGGTGACTCAAAGACCTTAATGTTTGTTAACATATCACCTGATCCATCTTCAA 2407
Query 2518 CTGGAGAGTCTCTTTGCTCACTCCGGTTTGCTGCTAGAGTAAATGCGTGTGAAATTGGTA 2577
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
Sbjct 2408 CTGGAGAGTCTCTTTGCTCACTCCGGTTTGCTGCTAGAGTGAATGCATGTGAGATTGGAA 2467
Query 2578 TACCTAGGC-GACAAACTTCAACGAAGCTCCTTGACTCTCGCTTAAGCTATGGCTAAAA 2635
||||| | | |||||||||| | || ||||| ||||||||| |||| || || |||||
Sbjct 2468 TACCTCG-CAGACAAACTTCCGCAAAACTCCTCGACTCTCGCCTAAGTTACGGTTAAAA 2525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107528761635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5