BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21280.2
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492755 jgi|Araly1|492755|fgenesh2_kg.7__2188__AT4G21280.2 1389 0.0
Ahg490167 jgi|Araly1|490167|fgenesh2_kg.6__3301__AT4G05180.1 459 2e-128
> Ahg492755 jgi|Araly1|492755|fgenesh2_kg.7__2188__AT4G21280.2
Length=890
Score = 1389 bits (752), Expect = 0.0
Identities = 848/893 (95%), Gaps = 11/893 (1%)
Strand=Plus/Plus
Query 12 GCTTCAATTTTCGTCTTGAGAAAG--AA-AAACAA-AATGGCTTCGATGGGTGGATTACA 67
|||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||
Sbjct 1 GCTTCAATTTTCGTCTTGAGAAAGAAAACAAAAAACAATGGCTTCGATGGGTGGATTACA 60
Query 68 CGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCAATGGCTCCAGCCGTCTGAA 127
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCAATGGCTCGAGCCGTCTGAA 120
Query 128 TGGCTCTGGAAGAGTGGCGGTGGCTCAAAGGTCTAGACTTGTCGTCAGAGCTCAGCAGAG 187
|| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 121 TGTCCCTGGAAGAGTGGCGGTGGCTCAAAGGTCTAGACTTGTGGTCAGAGCTCAGCAGGG 180
Query 188 TGAGGAGACTTCTCGCCGGTCCGTGATTGGGCTTGTTGCTGCTGGTTTAGCTGGTGGCTC 247
||| ||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||||
Sbjct 181 TGAAGAGACTTCTCGTCGGTCTGTGATTGGGCTCGTGGCTGCTGGATTAGCCGGTGGCTC 240
Query 248 GTTTGTTCAGGCTGTCCTCGCCGATGCTATTTCGATCAAAGTTGGCCCTCCTCCAGCTCC 307
|||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||
Sbjct 241 GTTTGTTCAGGCTGTCCTCGCCGATGCTGTTCCGATCAAAGTTGGTCCTCCTCCACCTCC 300
Query 308 TTCCGGTGGCCTTCCAGCTGGGACAGATAACTCAGACCAAGCAAGAGACTTTGCATTGGC 367
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 301 TTCCGGTGGCCTTCCAGCTGGGACAGAGAACTCAGACCAAGCAAGAGACTTTGAATTGGC 360
Query 368 ATTGAAAGACAGGTTTTACTTACAGCCATTGCCACCAACAGAAGCTGCAGCTAGAGCCAA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGAAAGACAGGTTTTACTTACAGCCATTGCCACCAACAGAAGCTGCAGCTAGAGCCAA 420
Query 428 AGAATCTGCAAAGGATATCATAAATGTGAAGCCATTGATCGACAGGAAAGCTTGGCCATA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAATCTGCAAAGGATATCATAAATGTGAAGCCATTGATCGACAGGAAAGCTTGGCCATA 480
Query 488 TGTTCAAAACGATCTTCGTTCCAAGGCTTCTTATCTTCGTTATGATCTTAACACAATCAT 547
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 TGTTCAAAACGATCTCCGTTCCAAGGCTTCTTATCTTCGTTATGACCTTAACACAATCAT 540
Query 548 TTCCTCCAAACCCAAGGATGAGAAGAAGTCACTCAAGGATCTCACCACCAAGCTCTTCGA 607
|||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct 541 TTCCTCCAAACCCAAGGACGAGAAGAAGTCCCTAAAGGAGCTCACCACCAAGCTCTTCGA 600
Query 608 TACCATCGACAATCTGGATTATGCGGCGAAGAAGAAGAGTCCTTCGCAGGCTGAGAAGTA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACCATCGACAATCTGGATTATGCGGCGAAGAAGAAGAGTCCTTCGCAGGCTGAGAAGTA 660
Query 668 CTATGCTGAGACAGTCTCTGCTTTGAACGAAGTTCTTGCCAAGCTTGGTTAAGCATTTTA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTATGCTGAGACAGTCTCTGCTTTGAACGAAGTTCTTGCCAAGCTTGGTTAAGCATTTTA 720
Query 728 ATTTCTGCATTTTTCTTGTAAATTATTAT-TCTTGGTTTTTGTTCT-TGAGTACTTTAGA 785
||| |||| |||||||||||||||||||| ||||| |||||||| | |||||||||||||
Sbjct 721 ATT-CTGC-TTTTTCTTGTAAATTATTATCTCTTGATTTTTGTTTTCTGAGTACTTTAGA 778
Query 786 CTCAAATTCGTGAATCTGAATTTATGTTTCACGTTTTCACCAAGTAA-TGGCAATTTCTT 844
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 779 CTCAAATTCGTGAATCTGAATTTATTTTTCACGTTTTCACCAAAAAAATGGCAATTTCTT 838
Query 845 GAGTATGCGTTAGCTTTGT-TTGCATGGTGATTTAGCAAACAACAACATAAAG 896
|||||||| ||| |||| | ||||||||||||||||||||||||| ||| |||
Sbjct 839 GAGTATGCATTAACTTT-TCTTGCATGGTGATTTAGCAAACAACATCATTAAG 890
> Ahg490167 jgi|Araly1|490167|fgenesh2_kg.6__3301__AT4G05180.1
Length=893
Score = 459 bits (248), Expect = 2e-128
Identities = 553/695 (80%), Gaps = 42/695 (6%)
Strand=Plus/Plus
Query 49 CTTCGATGGGTGGATTACACGGTGCATCTCCGGCGGTTCTTGAAGGAAGCT-TAAAGATC 107
||||||||| ||| |||| || ||||||| ||| || ||||||||||| | || |||||
Sbjct 90 CTTCGATGGCTGGCTTACGTGGCGCATCTCAGGCTGTCCTTGAAGGAAG-TCTACAGATC 148
Query 108 AATGGCTCCAGCCGTCTGAATGGC-TCTGGAAGAGTGGCGG-TGG--CTCAAAGGTCTAG 163
|||||||| | |||| |||| | ||| |||||| ||| ||| ||||||| | |
Sbjct 149 AATGGCTCAAACCGTTTGAA---CATCT-CAAGAGTCACGGTTGGATCTCAAAGAACCGG 204
Query 164 ACTTGTCG-TCAGAGCTCAGC---A-GAGT--G-A--GGAGACTTCTCGCCGGTCCGTGA 213
|||||| | |||| ||||||| | |||| | | || | | |||| |||| ||||
Sbjct 205 ACTTGT-GATCAGGGCTCAGCAGAACGAGTCAGTACCAGAAAGTAGTCGCAGGTCAGTGA 263
Query 214 TTGGGCTTGTTGCTGCTGGTTTAGCTGGTGGCTCGTTTGTTCAGGCTGTCCTCGCCGATG 273
| ||||| || || ||||||||||| ||||| || || ||| | ||||| ||||||| |
Sbjct 264 TCGGGCTCGTGGCGGCTGGTTTAGCCGGTGGTTCATTCGTTAAAGCTGTTTTCGCCGAAG 323
Query 274 CTATTTCGATCAAAGTTGGCCCTCCTCCAGCTCCTTCCGGTGGCCTTCCAGCTGGGACAG 333
||||| ||||||||||||| ||||||||| ||||||||||||||| | | |||| ||||
Sbjct 324 CTATTCCGATCAAAGTTGGTCCTCCTCCACCTCCTTCCGGTGGCC-T--ACCTGGAACAG 380
Query 334 ATAACTCAGACCAAGCAAGAGACTTTGCATTGGCATTGAAAGACAGGTTTTACTTACAGC 393
|||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||| |
Sbjct 381 ATAACTCAGACCAAGCAAGAGATTTTTCATTGGCATTGAAAGACAGATTTTACATACAAC 440
Query 394 CATTGCCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGC-AAAGGATATCATAAAT 452
||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||| ||
Sbjct 441 CATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGCTAAAG-AGATCATTAAC 499
Query 453 GTGAAGCCATTGATCGACAGGAAAGCTTGGCCATATGTTCAAAACGATCTTCGTTCCAAG 512
|| ||| || ||||||||| ||||||||||| || ||||| |||||||| |||| |||
Sbjct 500 GTTAAGTCACTGATCGACAAAAAAGCTTGGCCTTACGTTCAGAACGATCTCCGTTT-AAG 558
Query 513 -GCTTCTTATCTTCGTTATGATCTTAACACAATCATTTCCTCCAAACCCAAGGATGAGAA 571
|| || || |||||||| ||||||||||| | || ||| | || || || || |||||
Sbjct 559 AGCATCGTACCTTCGTTACGATCTTAACACCGTTATCTCCGCTAAGCCTAAAGAAGAGAA 618
Query 572 GAAGTCAC-TCAAGGATCTCACCACCAAGCTCTTCGATACCATCGACAATCT-GGATTAT 629
||| || | || || || ||| |||||||||||| ||||||||||| || ||| |||
Sbjct 619 AAAGA-ACCTTAAAGAACTTACCGGCAAGCTCTTCGAAACCATCGACAA-CTTGGACTAT 676
Query 630 GCGGCGAAGAAGAAGAGTCCTTCGCAG--GCTGAGAAGTACTA-TGCTGAGACAGTCTCT 686
||||||| | ||||| | | ||| ||||||||||| || | | || || |||||
Sbjct 677 GCGGCGAGGTCTAAGAG-CAGCC-CAGATGCTGAGAAGTATTACT-CAGAAACTGTCTCG 733
Query 687 -GCTTTGAACGAA-GTTCTTGCCAAGCTTGGTTAA 719
| ||||||| || |||||||||||||||||||||
Sbjct 734 AG-TTTGAAC-AATGTTCTTGCCAAGCTTGGTTAA 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5