BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21310.1 Length=876 Score E Sequences producing significant alignments: (Bits) Value Ahg492752 jgi|Araly1|492752|fgenesh2_kg.7__2185__AT4G21310.1 1291 0.0 > Ahg492752 jgi|Araly1|492752|fgenesh2_kg.7__2185__AT4G21310.1 Length=824 Score = 1291 bits (699), Expect = 0.0 Identities = 784/825 (95%), Gaps = 5/825 (1%) Strand=Plus/Plus Query 40 TAAAAGTTAAAATTTTCTCATGAAAAAGAGAGGATCACAGCTAAATTTTATTCTCTTAAC 99 |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1 TAAAAGATAAAATTTTCTGATGAAAAAGAGAGGATCACAGCTAAATTTTATGCTCTTAAC 60 Query 100 ATGATCTTTAGTACAAATGCAAGAAAAGGAAACTTATGTTGAACTTTATTCTTATTCCAT 159 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 61 ATGATCTTTAGTAAAAATGCAAGAAAAGGAAACTTATGTTCAACTTTATTCTTATTCCAT 120 Query 160 CCAACGAAGAGAGTCTCTCAAAGCTTAAAACTCTAATTGCCTATAAATTACAAGAACAAG 219 |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 121 CCAACGAAGAGAGTTTCTTAAAGCTTAAAACTCTAATTGTCTATAAATTACAAGAACAAG 180 Query 220 TTATTACTTCAACAACAATACTTTCTGCTTCTTTGTTTGCTAGTAAGAACTTGTTTCATC 279 ||| ||||||||||||||||||||||||||||||||||||| |||| || |||||||||| Sbjct 181 TTAGTACTTCAACAACAATACTTTCTGCTTCTTTGTTTGCTGGTAATAATTTGTTTCATC 240 Query 280 GACAATGGCGAGGAATGTAGGGTTCTTCATCTGCATCTTGATCCTAGCCATGGATGTTTC 339 ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 241 GACAATGGCAAGAAATGTAGGGTTCTTTATCTGCATCTTGATCCTAGCCATGGATGTTTC 300 Query 340 GGCTGGAATTCTCGGCATTGAAGCCGAAATAGCTCAGAACAAGGTGAAGCATTTGAAGAT 399 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGCTGGAATTCTTGGCATTGAAGCCGAAATAGCTCAGAACAAGGTGAAGCATTTGAAGAT 360 Query 400 GTGGATATTCGAGTGTAGAGACCCGAGTTACACAGCCTTCAAGTACGGTTTAGCTGCGTG 459 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTGGATTTTCGAGTGTAGAGACCCGAGTTACACAGCCTTCAAGTACGGTTTAGCTGCGTG 420 Query 460 CATCCTTTTGGTGTTAGCCCATGTAACGGCTAATTTTCTTGGTGGGTGTCTCTGTGTTGC 519 ||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 421 CATCCTTTTGGTGCTAGCCCATGTAACAGCTAATTTTCTCGGTGGGTGTCTCTGTGTTGC 480 Query 520 CTCAAGACAAGACCTTGAAAAATCCTCTGCCAATAAACAGCTCGCTGTGGCTTCTCTGAT 579 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 481 CTCAAGACAAGACCTTGAAAAATCCTCTGCCAATAAACAGCTTGCTGTGGCTTCTCTGAT 540 Query 580 ATTC-AC--GTGGATCATATTGGCGATTGCATTTTCGATGTTGATAGTAGGGACGATGGC 636 |||| | ||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 541 ATTCTCCTGGTGGATCATATTGGCAATTGCATTCTCGATGTTGATCGTAGGGACGATGGC 600 Query 637 AAACTCAAGATCGAGAAAAAACTGTGGGATATCACACCATCGGGTTCTGTCCATAGGAGG 696 |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 601 AAACTCAAGATCAAGAAAAAACTGCGGGATATCGCACCATCGGGTTCTGTCCATAGGAGG 660 Query 697 GATCCTCTGTTTCGTTCACGGCCTCTTTGCTGTTGCTTATTACATCTCTGCAACTGCTTC 756 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GATCCTCTGTTTCATTCACGGCCTCTTTGCTGTTGCTTATTACATCTCTGCAACTGCTTC 720 Query 757 AACACGAGAACAGACAAGCGCAGGCCACGCTTGAAAAATTTTCTACCC-GTTTTTTCCTT 815 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 721 AACACGAGAACAGACAAGCGCAGGCCACGCTTGAAAAATTTTCTACCCCGTTTTT-CCTT 779 Query 816 TCTATAAATTTAACCCAATGTTTAAACTTGTCTAAAAGAGATATA 860 |||||||||||||| |||||||||| ||| || ||||| ||||| Sbjct 780 TCTATAAATTTAACGCAATGTTTAAGTTTGACTTAAAGATATATA 824 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32442602367 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5