BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21310.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492752 jgi|Araly1|492752|fgenesh2_kg.7__2185__AT4G21310.1 1291 0.0
> Ahg492752 jgi|Araly1|492752|fgenesh2_kg.7__2185__AT4G21310.1
Length=824
Score = 1291 bits (699), Expect = 0.0
Identities = 784/825 (95%), Gaps = 5/825 (1%)
Strand=Plus/Plus
Query 40 TAAAAGTTAAAATTTTCTCATGAAAAAGAGAGGATCACAGCTAAATTTTATTCTCTTAAC 99
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TAAAAGATAAAATTTTCTGATGAAAAAGAGAGGATCACAGCTAAATTTTATGCTCTTAAC 60
Query 100 ATGATCTTTAGTACAAATGCAAGAAAAGGAAACTTATGTTGAACTTTATTCTTATTCCAT 159
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 ATGATCTTTAGTAAAAATGCAAGAAAAGGAAACTTATGTTCAACTTTATTCTTATTCCAT 120
Query 160 CCAACGAAGAGAGTCTCTCAAAGCTTAAAACTCTAATTGCCTATAAATTACAAGAACAAG 219
|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 CCAACGAAGAGAGTTTCTTAAAGCTTAAAACTCTAATTGTCTATAAATTACAAGAACAAG 180
Query 220 TTATTACTTCAACAACAATACTTTCTGCTTCTTTGTTTGCTAGTAAGAACTTGTTTCATC 279
||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 181 TTAGTACTTCAACAACAATACTTTCTGCTTCTTTGTTTGCTGGTAATAATTTGTTTCATC 240
Query 280 GACAATGGCGAGGAATGTAGGGTTCTTCATCTGCATCTTGATCCTAGCCATGGATGTTTC 339
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GACAATGGCAAGAAATGTAGGGTTCTTTATCTGCATCTTGATCCTAGCCATGGATGTTTC 300
Query 340 GGCTGGAATTCTCGGCATTGAAGCCGAAATAGCTCAGAACAAGGTGAAGCATTTGAAGAT 399
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCTGGAATTCTTGGCATTGAAGCCGAAATAGCTCAGAACAAGGTGAAGCATTTGAAGAT 360
Query 400 GTGGATATTCGAGTGTAGAGACCCGAGTTACACAGCCTTCAAGTACGGTTTAGCTGCGTG 459
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGATTTTCGAGTGTAGAGACCCGAGTTACACAGCCTTCAAGTACGGTTTAGCTGCGTG 420
Query 460 CATCCTTTTGGTGTTAGCCCATGTAACGGCTAATTTTCTTGGTGGGTGTCTCTGTGTTGC 519
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 421 CATCCTTTTGGTGCTAGCCCATGTAACAGCTAATTTTCTCGGTGGGTGTCTCTGTGTTGC 480
Query 520 CTCAAGACAAGACCTTGAAAAATCCTCTGCCAATAAACAGCTCGCTGTGGCTTCTCTGAT 579
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 CTCAAGACAAGACCTTGAAAAATCCTCTGCCAATAAACAGCTTGCTGTGGCTTCTCTGAT 540
Query 580 ATTC-AC--GTGGATCATATTGGCGATTGCATTTTCGATGTTGATAGTAGGGACGATGGC 636
|||| | ||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 541 ATTCTCCTGGTGGATCATATTGGCAATTGCATTCTCGATGTTGATCGTAGGGACGATGGC 600
Query 637 AAACTCAAGATCGAGAAAAAACTGTGGGATATCACACCATCGGGTTCTGTCCATAGGAGG 696
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 601 AAACTCAAGATCAAGAAAAAACTGCGGGATATCGCACCATCGGGTTCTGTCCATAGGAGG 660
Query 697 GATCCTCTGTTTCGTTCACGGCCTCTTTGCTGTTGCTTATTACATCTCTGCAACTGCTTC 756
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATCCTCTGTTTCATTCACGGCCTCTTTGCTGTTGCTTATTACATCTCTGCAACTGCTTC 720
Query 757 AACACGAGAACAGACAAGCGCAGGCCACGCTTGAAAAATTTTCTACCC-GTTTTTTCCTT 815
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 721 AACACGAGAACAGACAAGCGCAGGCCACGCTTGAAAAATTTTCTACCCCGTTTTT-CCTT 779
Query 816 TCTATAAATTTAACCCAATGTTTAAACTTGTCTAAAAGAGATATA 860
|||||||||||||| |||||||||| ||| || ||||| |||||
Sbjct 780 TCTATAAATTTAACGCAATGTTTAAGTTTGACTTAAAGATATATA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5