BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21323.1
Length=2412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329472 jgi|Araly1|329472|fgenesh1_pm.C_scaffold_7001699 3362 0.0
> Ahg329472 jgi|Araly1|329472|fgenesh1_pm.C_scaffold_7001699
Length=5238
Score = 3362 bits (1820), Expect = 0.0
Identities = 2094/2228 (94%), Gaps = 11/2228 (0%)
Strand=Plus/Plus
Query 55 GCATTTGGTTTTGTGTTTATAATGAATGGAAAGCTAAGCTCTGGAACAACACCCCACGAG 114
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 904 GCATTTGGTTTTGTGTTTATAATGAATGGAAAGCTTAGCTCTGGAACAACACCCCACGAG 963
Query 115 GCCGATCCTCCTCAGGCATCAAACTTGGCATTGTCTCCAGAGGCTGCTCCTCCAGACA-- 172
|| |||||||| ||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 964 GCAGATCCTCCCCAGGCATCAAACTTGGCCTTCTCTCCCGAGGCTGCTCCTCCAGACACC 1023
Query 173 -CTGCTATGGACGATGCCTCTGGTATAAATTTTGGACCTCTCCCACCATTTGTCCCCGAG 231
||||||||||||||| ||||| ||||||| || |||| | ||||||||||||||||||
Sbjct 1024 TCTGCTATGGACGATGACTCTGACATAAATTATGAACCTGTGCCACCATTTGTCCCCGAG 1083
Query 232 TTCCCGGTTTATATATTTTACTTGGGGGAAAGGAAACACGATGATCCTAATTTGGTGACT 291
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TTCCCCGTTTTTATATTTTACTTGGGGGAAAGGAAACACGATGATCCTAATTTGGTGACT 1143
Query 292 CAATCACATCTTGAAATCCTGAAATCGGTTCTTGGAAGCGAAGAAGCAACCAATAAGTCA 351
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1144 CAATCACATCTTGAAATCCTGAAATCGGTTCTTGGAAGCGAAGAAGCAGCCAATAAGTCG 1203
Query 352 ATGGTCTACAGTTATCACCATGGGTTTTCTGGCTTTGCAGCTAAGCTCAAACCGGCCGAG 411
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1204 TTGGTCTACAGTTATCACCATGGGTTTTCTGGCTTTGCAGCCAAGCTCAAACCAGCCGAG 1263
Query 412 GCAGAGAAATTGAAGAAGCATCCTGAAGTTATTATTCTTCTGGAAAACCGAAAACTTGGG 471
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GCAGAGAAATTGAAAAAGCATCCTGAAGTTATTATTCTTCTGGAAAACCGAAAACTTGGG 1323
Query 472 TTGCAAACGACACGGACATGGGATTACTTAGGCCAATTTTCAACTCCAACTTCTTCTAAA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 TTGCAAACGACACGGACATGGGATTACTTAGGCCAATTTTCAACTCCAACTTCTTCTAAA 1383
Query 532 AGTCTTCTACATGAGACCAACATGGGCAGTGGTGCTATTATTGGTGTTATTGACTCTGGT 591
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1384 GGTCTCCTACATGAGACCAACATGGGCAGTGGTGCTATTATTGGCGTTATCGACTCTGGG 1443
Query 592 ATATGGTCAGAATCAGGCT-CCTTTGACGATGATGGATATGGACCAATACCAAAACATTG 650
||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| ||
Sbjct 1444 ATATGGTCAGAATCAGG-TGCCTTTGACGACGATGGATATGGACCAATACCAAAACAATG 1502
Query 651 GAAAGGACAATGTGTATCTGCAGACCAGTTCAGTCCTGCAGATTGCAACAAAAAGCTTAT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 GAAAGGACAATGTGTATCTGCAGACCAGTTCAGTCCTGCAGATTGCAACAAAAAGCTTAT 1562
Query 711 TGGAGCTAAATACTACATTGATGGTCTTAATGCAGATCTGGAAACAAGTATTAACAGTAC 770
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1563 TGGAGCTAAATACTACATTGATGGTCTTAATGCAGATCTCGAAACAAGTATCAACAGTAC 1622
Query 771 TACAGAATATCTATCTCCTAGAGATCATAATGGCCACGGGACTCAAGTATCATCCACGGC 830
|| ||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||
Sbjct 1623 TATAGAATATCTATCTCCAAGAGATCGTAATGGCCACGGGACTCAAGTATCCTCAACGGT 1682
Query 831 AGCTGGTTCCTTCGTTTCTAACATGACTTTGCTTGGTCTCTCCTCTGGGTCAATCATGAG 890
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1683 AGCTGGTTCCTTCGTTTCTAATGTGACTTTGCCCGGTCTCTCCTCTGGGTCAATCATGAG 1742
Query 891 AGGTGGCGCTCCAAAGGCGCACATAGCTATGTATAAAGCATGTTGGGATGTGGAAGGAGG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 AGGTGGCGCTCCAAAGGCGCACATAGCTATGTATAAAGCATGTTGGGATGTGGAAGGAGG 1802
Query 951 GATGTGTTCAGTTGCTGATGTCTGGAAAGCTTTTGATGAAGCCATTCACGATGGTGTTGA 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GATGTGTTCAGTTGCTGATGTCTGGAAAGCTTTTGATGAAGCCATTCACGATGGTGTTGA 1862
Query 1011 TGTTTTGTCGGTTTCCGTCGGCGGCTCGGCCCTGAAAACACTTGATGTTGAAATCGACAT 1070
| ||||||||||||| | || ||||| ||||||||| | ||||||||||||||||||||
Sbjct 1863 TATTTTGTCGGTTTCTATTGGTGGCTCAGCCCTGAAATCTCTTGATGTTGAAATCGACAT 1922
Query 1071 CGCAATTCCAGCATTACACGCAGTGAATAAAGGTATTCCTGTTGTTTCTCCAGCTGGTAA 1130
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1923 CGCAATTCCAGCACTACACGCCGTGAATAAAGGTATTCCTGTTGTTTCTCCAGCTGGTAA 1982
Query 1131 CGAAGGATCCCGCTCTTCATCGGTTATTAACGTTTCTCCATGGATATTAACCGTGGCTGC 1190
| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1983 TGGAGGATCCCGCTATTCATCGGTTATTAACATTTCTCCATGGATATTAACCGTGGCTGC 2042
Query 1191 GACTACCCTTGACCGGTCTTTCTCCACATTGATCACACTCGAAAACAATAAAACATATCT 1250
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||
Sbjct 2043 GACTACCCTTGACCGGTCTTTCCCCACATTGATCACACTCGAGAACAATAAAACCTTTCT 2102
Query 1251 GGGTCAGAGTCTGTACACAGGACCAGAAATTAGCTTCACAGATGTGATTTGTACTGGTGA 1310
||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||
Sbjct 2103 GGGTCAGAGTCTGTACACAGGACCAGAAATTAGCTTCACTGTTCTGATTTGTACTGCTGA 2162
Query 1311 TCATAGTAATGTTGATCAAATTACAAAGGGTAAAGTTATAATGCACTTCTCGATGGGTCC 1370
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2163 TCATAGTAATCTTGATCAAATTACAAAGGGTAAAGTTATAATGCACTTCTCGATGGGTCC 2222
Query 1371 CGTTCGTCCGCTGACACCGGATGTTGTTCAGAAAAACGGTGGTATCGGTCTAATTTATGT 1430
| | ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2223 CACGCCTCCAATGACACCGGATATTGTTCAGAAAAACGGTGGTATCGGTCTAATTGATGT 2282
Query 1431 GAGAAATCCGGGTGATAGTAGAGTTGAATGTCCCG-TAAACTTTCCTTGTATCTACTTGG 1489
||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 2283 GAGAAGTCCGAGTGATAGTAGAGTTGAATGTCCCGCTAA-CTTTCCTTGTATCTACGTGG 2341
Query 1490 ATATGGAAGTTGGATCCGAGCTATACACCTACATCCAAACTAGGAGCTCAATGAAAATTA 1549
|| ||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||
Sbjct 2342 ATTTGGAAGTTGGATCTGAGCTATATACCTACATCCAAACTACGAGCTCACTGAAAATTA 2401
Query 1550 AGATAAGCCCATACAAGACAATAATTGGCGAAAGTGTAGCAAGTAAAGTCGCAAAGTCAT 1609
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2402 AGATAAGCCCATACAAGACAATAATTGGCGAAAGAGTAGCAAGTAAAGTCGCAAAGTCAT 2461
Query 1610 CGGCAAGAGGGCCTAGTTCATTTTCACCTGCCATTCTTAAGCCGGATATAGCAGCTCCGG 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2462 CGGCAAGAGGGCCTAGTTCATTTTCACCTGCCATTCTTAAGCCGGATATAGCAGCTCCGG 2521
Query 1670 GTTTGACCTTGCTAACACCTAGAATACCAACAGACGAAGACACCAGAGAATTCGTTTACT 1729
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2522 GTGTGACCTTGCTAACACCTAGAATACCAACAGACGAAGACACCAGCGAATTCACTTACT 2581
Query 1730 CAGGAACATCAATGGCAACTCCGGTTATTGCAGGAATCGTAGCACTCCTCAAGATATCGC 1789
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 2582 CAGGAACATCAATGGCAACTCCGGTAATTGCAGGAATAGTAGCACTCCTCAAGATTTCGC 2641
Query 1790 ATCCTAATTGGTCTCCTGCTGTAATCAAATCAGCTCTTGTCACAACAGCAATGAAAACTG 1849
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2642 ATCCTAATTGGTCTCCTGCTGCAATCAAATCAGCTCTTGTCACAACAGCCATGAAAACTG 2701
Query 1850 ATCCATACGGCGAGCGTCTGACTGTAGATGGAGGGAACTATAAGGTAGCCGATGCATTCG 1909
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2702 ATCCATACGGCGAGCGTCTGACTGTAGATGGAGGTAACTATAAGGTAGCCGATGCATTCG 2761
Query 1910 ATTACGGAGGAGGTCTTGTGAATCTGGAGAAAGCCACAGATCCCGGTCTTGTATACGACA 1969
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2762 ATTACGGAGGAGGTCTTGTGAATCTAGAGAAAGCCACAGATCCCGGTCTTGTATATGACA 2821
Query 1970 TGGACATCAATGATTACACACATTACTTATGTTCTCAAACTCTTTACACAGACAAGAAGG 2029
|||| ||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||
Sbjct 2822 TGGATATCAATGATTACATACATTACTTATGTTCACAAGCACTTTACACAGACAAGAAGG 2881
Query 2030 TTTCTGCTCTAACCGGAAACGTCAATAACAAGTGCCCGAGCTCAAGTTCATCGATTCTTG 2089
|||||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||
Sbjct 2882 TTTCTGCTCTAACCGGAAACGTCACTAGTAAGTGCCCGAGCTCAGGTTCGTCGATTCTTG 2941
Query 2090 ACCTCAATGTACCGTCCATTACAATCCCAGACCTCAAGGGA-ACAGTCA-ATGTGACCCG 2147
|||||||||||||||| ||||| || |||||||||||| || || |||| | ||||||||
Sbjct 2942 ACCTCAATGTACCGTCAATTACCATTCCAGACCTCAAGCGAGAC-GTCACA-GTGACCCG 2999
Query 2148 AACTGTGACCAACGTTGGACGTGTCAAATCGGTTTATAAGCCTGTGATAGAGGCTCCATT 2207
||| ||||| ||||| |||| |||||| |||||||||||||||||||| ||| | |||||
Sbjct 3000 AACCGTGACAAACGTAGGACCTGTCAAGTCGGTTTATAAGCCTGTGATCGAGACCCCATT 3059
Query 2208 CGGATTCAATGTCGTGGTTTCGCCAAAGAAGTTGAAGTTTAACAAAACAAGAAACAAGCT 2267
|||||||| || ||||||| ||| |||||||| ||||||||||||| |||||||||| |
Sbjct 3060 AGGATTCAAGGTTGTGGTTTGGCCGAAGAAGTTAAAGTTTAACAAAAGAAGAAACAAGGT 3119
Query 2268 TGCTTTTA 2275
||| ||||
Sbjct 3120 TGCGTTTA 3127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90883324570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5