BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21330.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354651 jgi|Araly1|354651|fgenesh1_pg.C_scaffold_7001824 1033 0.0
> Ahg354651 jgi|Araly1|354651|fgenesh1_pg.C_scaffold_7001824
Length=627
Score = 1033 bits (559), Expect = 0.0
Identities = 605/627 (96%), Gaps = 3/627 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGGAGGAAGCAGATTTCAAGAACCAGTGAGGATGAGCCGTAGGAAACAAGTAACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGGAGGAAGCAGATTTCAAGAACCAGTGAGGATGAGCCGTAGGAAACAAGTAACA 60
Query 61 AAAGAGAAGGAAGAAGATGAAAACTTCAAATCTCCAAATCTTGAAGCAGAGAGACGTAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGAGAAGGAAGAAGATGAAAACTTCAAATCTCCAAATCTTGAAGCAGAGAGACGTAGA 120
Query 121 AGAGAGAAGCTTCATTGTCGGCTTATGGCTCTGCGATCTCATGTCCCCATTGTCACCAAC 180
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AGAGAGAAGCTTCATGGTCGGCTTATGGCTCTGCGATCTCATGTCCCAATTGTCACCAAC 180
Query 181 ATGACTAAAGCAAGTATTGTTGAAGATGCGATTACTTACATAGGAGAGCTTCAAAACAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 ATGACTAAAGCAAGTATTGTTGAAGATGCGATTACTTACATAGGAGAGCTTCAGAATAAT 240
Query 241 GTTAAGAATCTCTTAGAGACATTTCATGAAATGGAAGAAGCTCCTCCTGAGATTGATGAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GTTAAGAATCTCTTAGAGACATTTCATGAAATGGAAGAAGCTCCTCCTGAGACTGATGAA 300
Query 301 GAACAAACGGATCCAATGATAAAACCTGAAGTTGAAACTAGTGATCTTAACGAAGAGATG 360
|||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GAACAAACAGATCAAATGATTAAACCTGAAGTTGAAACTAGTGATCTTAAAGAAGAGATA 360
Query 361 AAGAAACTCGGAATCGAGGAGAATGTGCAATTGTGTAAGATTGGGGAGAGGAAGTTTTGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 AAGAAACTCGGAATCGAGGAGAATGTGCAATTGTGTAAGATTGGGGAGAGCAAGTTTTGG 420
Query 421 TTAAAGATCATAACAGAGAAGAGAGATGGGATCTTTACTAAATTCATGGAGGTTATGAGA 480
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 421 TTAAAGATCATAACAGAGAAGAAAGCTGGGATCTTTACAAAATTCATGGAGGTTATGAGA 480
Query 481 TTTCTCGGATTCGAGATTATCGATATTAGTCTAACAACTTCAAATGGAGCAATTCTTATT 540
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 481 TTTCTCGGATTCGAGATTATCGACATTAGTCTAACAACTTCAAATGGAGCCATTCTTATT 540
Query 541 AGTGCCTCTGTTCAGA--CA-CAGGAACTCTGTGATGTTGAACAGACAAAAGATTTTCTT 597
|| |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTTCCTCTGTTCAGATACATCAGGAACTCTGTGATGTTGAACAGACAAAAGATTTTCTT 600
Query 598 TTGGAAGTTATGAGAAGCAATCCATAA 624
||||||||||||||||||||||| |||
Sbjct 601 TTGGAAGTTATGAGAAGCAATCCGTAA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5