BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21340.1
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492747 jgi|Araly1|492747|fgenesh2_kg.7__2180__AT4G21340.1 1373 0.0
> Ahg492747 jgi|Araly1|492747|fgenesh2_kg.7__2180__AT4G21340.1
Length=1048
Score = 1373 bits (743), Expect = 0.0
Identities = 881/945 (93%), Gaps = 20/945 (2%)
Strand=Plus/Plus
Query 47 AAA-CTAAACCATTGTCTACGTAACCAACAAAACATGACAGAAGAATTCGACACTACGGG 105
||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 31 AAATCTAAACCATAGTCTACGTAACCAACAAGACATGACAGAAGAATTCGACACTACGGG 90
Query 106 AGTTTGTACCGGAACATGGTGGAGCTCCTCCAACGGCATGTTCTCAGGCTGTTCTCTGCC 165
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 91 AGTTTGTAACGGAACATGGTGGAGCTCCTCCAACGGCATGTTCTCCGGCTGTTCTCTGCC 150
Query 166 ACGTTCCGCGGAGATTGTTGTCGATTTTGGTGAGA-TTGAATGGCAAAACATTGATACCC 224
|||||| ||||||||||| |||||| | |||| || ||||||||||||||||||||||||
Sbjct 151 ACGTTCAGCGGAGATTGTCGTCGATCTCGGTG-GATTTGAATGGCAAAACATTGATACCC 209
Query 225 TTGATGCCAAAACTTACAACGAGAACTACCTTAG-TACTTCCACATTCTTAGGCAATGCA 283
||||||||||||| ||||| |||||||| ||| | |||||||||||||||||||||| ||
Sbjct 210 TTGATGCCAAAACCTACAATGAGAACTATCTT-GATACTTCCACATTCTTAGGCAATACA 268
Query 284 AATCTTGATACCACATCACAAATCTACGTTTCGAGTCCATCTAACATCCATGAAGAAGAA 343
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 269 AATCTTGATACCACCTCACAAATCTACGTTTCGAGTCAATCTAACATCCATGAAGAGGAA 328
Query 344 CGATACAATCAGATAAATAGTTTTCTAGAAGGATTGTTTGATTCTAGTGAGCAATTATTG 403
|||| |||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 329 CGATTCAATCAGATAAATAGTTTTCTAGAAGGATTGTTTGA---T--T---C---TA--- 374
Query 404 GTTCCTAACTGTCCCAAACCAGAACTATTCGAAAGCTTTCACTTCTTTGATGACGTTTTC 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 -TTCCTAACTGTCCCAAACCAGAACTATTCGAAAGCTTTCACTTCTTTGATGACGTTTTC 433
Query 464 CCGAACGAATCAAGAATGATATCAGTATTTGATCACCAAAAACCCAAGGAAGACATGCAA 523
||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||
Sbjct 434 TCGAACGAATCAAGAATGATATCAGTCTTTGATCACGACAAACCCAAGGACGACATGCAA 493
Query 524 GCTTGCAAGAGTCTGACTACATGCAAGAGAGCAAGTGAGAAAAGTGGAGAACTCGAAGAT 583
|| ||||||||| ||| ||| |||||||||||||||||||||| || ||||| |||||||
Sbjct 494 GCCTGCAAGAGTATGATTACTTGCAAGAGAGCAAGTGAGAAAACTGAAGAACACGAAGAT 553
Query 584 ATTGAGTCATCACAGCCATTAAAAAGGCCAAGACTTGAGACACCATCTCATTTTCCGAGC 643
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 554 ATTGAGTCATCACAGCCATTAAAAAGGCCAAGGCTTGAGACACCATCTCATTTTCCGAGC 613
Query 644 TTCAAAGTTCGTAAAGAGAAACTCGGAGATCGAATTACCGCGCTTCAACAGTTAGTTTCA 703
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 614 TTCAAAGTTCGTAAAGAGAAACTCGGAGATCGAATCACTGCGCTTCAACAGTTAGTTTCA 673
Query 704 CCCTTTGGCAAGACAGACACTGCTTCTGTCCTCCATGATGCTATAGATTACATCAAGTTT 763
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 674 CCCTTTGGCAAGACAGACACTGCTTCTGTCCTCCATGATGCTATAGAGTATATCAAGTTT 733
Query 764 CTACAAGAACAAATCACTGAAAAGGTCTCTACTAGTCCACACCTGAACTCTATAGGATCT 823
||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 734 CTACAAGAACATATCACTGAAAAGGTCTCGAGTAGTCCACACCTGAACTCTAAAGGATCT 793
Query 824 GGTGAACAGAAGCAGTGGTCAGACAAATCAAGCAATAATACTCATAATCAAAATTGTAGT 883
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 794 GGTGAACAGAAGCAGTGGTCAGACAAATCAAGCAATAATACTCATAATCAAGATTGTAGT 853
Query 884 CCAAGACAAGATCTTCGAAGCCGCGGTCTTTGTCTGATGCCGATCTCAAGTACTTTCTCC 943
||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 854 CCAAGACTAGATCTTCCAAGCCGTGGTCTTTGTCTGATGCCGATCTCAAGTACTTTCTCC 913
Query 944 ACTCCTCCGCAGCATTTGGACACATCTAGTTTGTGGAATTAGACT 988
|||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 914 ACTCCTCCACAGCATTTGGACGCATCTAGTTTCTGGAATTAGACT 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5