BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21350.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946058 jgi|Araly1|946058|scaffold_702287.1 1735 0.0
> Ahg946058 jgi|Araly1|946058|scaffold_702287.1
Length=1165
Score = 1735 bits (939), Expect = 0.0
Identities = 1066/1128 (95%), Gaps = 6/1128 (1%)
Strand=Plus/Plus
Query 1 ATGGCCTTTGATTTACCAAACGATTTCAGATGCCCGATCTCCCTTGAGATCATGTCCGAC 60
||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct 21 ATGGCCTTTGACTTACCAAACGATTTCAGGTGCCCGATCTCTCTTGAGATTATGTCTGAC 80
Query 61 CCAGTTATCCTCCAATCGGGTCATACTTTCGATCGGGTCTCTATCCAACAATGGATTGAC 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCGGTTATCCTCCAATCGGGTCATACTTTCGATCGGGTCTCTATCCAACAATGGATTGAC 140
Query 121 TCCGGCAATCGAACTTGTCCAATCACCAAGCTACC-CTTATCAGAAACCCCTTATCTGAT 179
||||||||||||||||| |||||||||||||| || || ||| |||| ||||| ||||||
Sbjct 141 TCCGGCAATCGAACTTGCCCAATCACCAAGCTCCCGCT-ATCTGAAAACCCTTCTCTGAT 199
Query 180 TCCCAATCACGCACTTCGTAGCTTAATTTTAAACTTCGCCCATGTGAGTCTTAAGGAATC 239
||||||||||||||||||||||||||||| ||| || || |||||||||| |||||||||
Sbjct 200 TCCCAATCACGCACTTCGTAGCTTAATTTCAAATTTTGCTCATGTGAGTCCTAAGGAATC 259
Query 240 ATCACGTCCTCGAACTCAACAAGAACACTCTCACTCTCAATCCCAAGCTTTAATCTCCAC 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 AACACGTCCTCGAACTCAACAAGAACACTCTCACTCTCAATCCCAAGCTTTAATCTCCAC 319
Query 300 TCTCGTCTCTCAATCGTCGTCTAATGCATCAAAGCTCGAGTCTTTGACTCGACTCGTCCG 359
||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 320 TCTCGTCTCTCGATCGCCGTCTAATGCGTCAAAGCTCGAGTCTTTGAGTCGACTCGTTCG 379
Query 360 ACTCACGAAGCGAGACTCGTCAATCAGGAGGAAAGTTACTGAGTCAGGAGCAGTTCGTGC 419
||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 380 TCTCACGAAGCGAGACTCGTTAATCAGGAGGAAAGTTACTGAATCAGGAGCGGTTCGTGC 439
Query 420 GGC-TCTGGATTGTGTTGACTCTTGTAATCAGGTTTTACAAGAAAAGTCTCTGTCTTTGC 478
||| | ||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 440 GGCGT-TGGATTGTGTTGACTCTGGTAATCAGGTTTTGCAGGAAAAGTCTCTGTCTTTGC 498
Query 479 TTTTGAATCTTAGTTTAGAAGATGATAACAAAGTTGGTTTAGTCGCTGATGGAGTGATAA 538
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 499 TTTTGAATCTTAGTTTAGAAGATGATAACAAAGTGGGTTTAGTAGCTGATGGAGTGATAA 558
Query 539 GACGGATTGTTACTGTTTTACGAGTCGGGTCACCGGATTGTAAAGCGATTGCTGCTACTC 598
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 559 GACGGATTGTTGCTGTTTTACGGGTCGGGTCACCGGATTGTAAAGCGATTGCTGCTACTC 618
Query 599 TGTTAACGAGTTTAGCTGTTGTTGAAGTGAATAAAGCTACTATTGGATCATATCCTGATG 658
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 619 TGTTAACGAGTTTAGCTGTTGTTGAAGTTAATAAAGCCACTATTGGATCGTATCCTGATG 678
Query 659 CAATCTCTGCTCTTGTTTCTCTTCTCCGGGTAGGGAATGATAGGGAGAGAAAGGAATCAG 718
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CAATCTCTGCTCTTGTTTATCTTCTCCGGGTAGGGAATGATAGGGAGAGAAAGGAATCAG 738
Query 719 CTACGGCTCTTTACGCTCTTTGCTCGTTTCCCGATAATCGGAAACGGGTTGTGGATTGTG 778
| |||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||
Sbjct 739 CGACGGCTCTTTACGCGCTCTGCTCGTTTCCGGATAATCGAAAACGGGTTGTGGATTGTG 798
Query 779 GGTCGGTGCCTATTTTGGTTGAAGCTGCTGATTCAGGGTTAGAGAGAGCAGTGGAAGTGT 838
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 799 GGTCGGTGCCTATTTTGGTTGAAGCAGCTGATTCAGGGCTAGAGAGAGCAGTGGAAGTGT 858
Query 839 TGGGACTTTTGGTTAAGTGTAGAGGAGGAAGAGAAGAGATGAGTAAAGTAAGTGGTTTTG 898
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 859 TGGGACTTTTGGTTAAGTGTAGAGGAGGAAGAGAGGAAATGAGTAAAGTAAGTGGCTTTG 918
Query 899 TTGAGGTTTTGGTTAACGTTTTGAGGAATGGGAA-TTTGAAAGGGATTCAGTATTCTCTG 957
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 919 TTGAGGTTTTGGTTAACGTTTTGAGGAATGG-AAGTTTGAAAGGGATTCAGTATTCTCTG 977
Query 958 TTTATCCTCAATTGCTTGTGTTGTTGTAGCGGAGAGATAGTTGATGAGGTTAAGAGAGAA 1017
|||||||||||||||||||||||||||||| |||| || || ||||||||||| ||||||
Sbjct 978 TTTATCCTCAATTGCTTGTGTTGTTGTAGCCGAGAAATCGTCGATGAGGTTAAAAGAGAA 1037
Query 1018 GGTGTTGTAGAGATATGCTTTGGTTTTGAGGATAATGAGAGTGAGAAAATCAGAAGGAAT 1077
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1038 GGTGTTGTAGAGATATGCTTTGGTTTGGAGGATAATGAGAGTGAGAAAATCAGAAGGAAT 1097
Query 1078 GCTACTATCTTAGTTCATACTTTACTTGGGATTCCAATGAGTTCATGA 1125
|||||||||||||| |||||||||||||||||| |||||| |||||||
Sbjct 1098 GCTACTATCTTAGTCCATACTTTACTTGGGATTTCAATGAATTCATGA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5