BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21370.1
Length=2559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890053 jgi|Araly1|890053|Al_scaffold_0007_2039 2359 0.0
Ahg946052 jgi|Araly1|946052|scaffold_702281.1 806 0.0
Ahg475686 jgi|Araly1|475686|fgenesh2_kg.2__816__AT1G65790.1 697 0.0
> Ahg890053 jgi|Araly1|890053|Al_scaffold_0007_2039
Length=2559
Score = 2359 bits (1277), Expect = 0.0
Identities = 2151/2560 (84%), Gaps = 112/2560 (4%)
Strand=Plus/Plus
Query 1 ATGAGAGGTGAATTACCAAACAAACACCAttcttacacctt---cttcgttttccttttc 57
|||||| ||||| |||||||||||||||||| ||||| ||| |||||| ||||| |||
Sbjct 1 ATGAGACGTGAAGTACCAAACAAACACCATTATTACAGCTTCAGCTTCGTCTTCCTCTTC 60
Query 58 ttcttcttaattctgttccctgatctctctatctctGTCAATACTTTGTCAGCTACAGAA 117
|| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 61 TTTTTCTTAATTCTGTTCCCTGATTTCTCTATCTCTACCAACACTTTGTCAGCTACAGAA 120
Query 118 TCCCTGACAATCTCAAGCAACAAAACCATTGTGTCTCCT-GGTGGTGTCTTCGAGCTTGG 176
|| ||||| || |||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 121 TCTCTGACTATTTCAAGCAACAAAACCATTGTGTCT-CTGGGTGATGTCTTCGAGCTTGG 179
Query 177 TTTCTTCAGAATCCTTGGGGATAGTTGGTACCTTGGGATTTGGTACAAGAAAATCTCTCA 236
|||||| | ||||||||| ||||||||||| |||||||||||||||||||||||| || |
Sbjct 180 TTTCTTTACAATCCTTGGTGATAGTTGGTATCTTGGGATTTGGTACAAGAAAATCCCTGA 239
Query 237 GAGAACCTATGTATGGGTTGCCAATAGAGACACTCCTCTCTCTA-ATCCTATTGGAATCC 295
|| ||||||||| |||||||| |||||||| | |||| |||||| ||| | ||||||||
Sbjct 240 GAAAACCTATGTTTGGGTTGCAAATAGAGATAATCCTATCTCTACTTCC-ACTGGAATCC 298
Query 296 TCAAAATCTCCAATGCTAACCTTGTCATCCTCGAT-AATTCTGATACGCATGTTTGGTCA 354
|||||||||||||||||||||||||| |||| || | || |||||| | ||||||||||
Sbjct 299 TCAAAATCTCCAATGCTAACCTTGTCCTCCTAAATCACTT-TGATACCCCTGTTTGGTCA 357
Query 355 ACGAATCTGACTGG-TGCGGTGAGATCTTCTGTGGTGGCAGAGCTTCTTGACAATGGCAA 413
|| ||||| || || | ||||| |||| | ||||||||||||||||| || || || ||
Sbjct 358 ACCAATCTAAC-GGCAGAGGTGAAATCTCCAGTGGTGGCAGAGCTTCTGGATAACGGAAA 416
Query 414 TTTTGTTCTAAGGGGCTCCAAAATCAATGAATCAGATGAGTTTTTGTGGCAGAG-TTTCG 472
||| || ||||||| |||||||| ||||| |||||||| |||||||||||||| ||| |
Sbjct 417 TTTCGTGCTAAGGGACTCCAAAACCAATGGCTCAGATGAATTTTTGTGGCAGAGCTTT-G 475
Query 473 ATTTCCCGACAGATACTTTATTACCGCAGATGAAATTGGGTCGGGATCACAAAAGAGGGC 532
|||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| | |||
Sbjct 476 ATTTCCCGACAGATACTTTACTACCGCAGATGAAGTTGGGTCTGGATCACAAAAAAAGGC 535
Query 533 TTAACAGA-TTCGTCACATCCTGGAAAAGCTCATTTGATCCGTCAAG-CGGGAGTT-TCA 589
| |||| | ||| || ||||||||||| ||||||||| |||||| |||| || |
Sbjct 536 TCAACAAATTTCTTC-GTTCCTGGAAAAGTTCATTTGATATGTCAAGTGGGGA-TTAT-T 592
Query 590 TGTTCAAACTCGAAACTCTAGGATTACCTGAGTTTTTTGGTTT-TACCAGCT--TTTTGG 646
|||||||| ||||||||||||| |||||||||||||| ||| | || | ||| |
Sbjct 593 TGTTCAAAATCGAAACTCTAGGGCTACCTGAGTTTTTT-ATTTGGATGAG-TGACTTTAG 650
Query 647 AAGTGTACCGGAGCGGCCCTTGGGATGGACTCCGGTTTAGCGGCATTCTGGAGATGCAAC 706
||||| |||||||||||||||| | ||| |||| ||||||||||| ||||||||||||
Sbjct 651 -AGTGTTCCGGAGCGGCCCTTGGAACGGAATCCGATTTAGCGGCATGCTGGAGATGCAAA 709
Query 707 AATGGGACGATATTATCTACAACTTCACGGAGAATAGAGAGGAGGTCGCTTACACTTTCC 766
|||||||||| ||||| || || || |||||||||| |||||||||||||| ||||||||
Sbjct 710 AATGGGACGACATTATTTATAATTTAACGGAGAATAAAGAGGAGGTCGCTTTCACTTTCC 769
Query 767 GAGTTACCGACCACAA-CTCCTACTCAAGATTGACAATAAA-TACCGTAGGACG-T-TTA 822
|| || |||||||| || |||||| |||||||||||||| || || || | | |||
Sbjct 770 GACCAACTGACCACAACCT-CTACTCGAGATTGACAATAAATTA-CG-CGG-GGTTATTA 825
Query 823 GAGGGATTCACGTGGGAACC-A-ACACAGCAAGAGTGGAACATGTTCTGGTTTATGCCAA 880
|| ||| || ||||| || | | ||| |||| ||||||||||| |||| || |||
Sbjct 826 CAGCAATTTACCTGGGATCCGATATACA--AAGAATGGAACATGTTATGGTCTACATCAA 883
Query 881 AGGAC-A--CTTGTGATTTGTATGGAAT--TTGTGGTCCTTACGCTTACTGTGACATGAG 935
|||| | | ||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 884 CGGACAACGCGTGTGAGACCTAT--AATCCTTGTGGTCCTTACGCTTACTGTGACATGAG 941
Query 936 CACGTCACCAACGTGTAACTGTATCAAAGGATTTCAACCGCTGTCCCCGCAAGATTGGGC 995
||||||||||| |||||||||| || |||| ||| ||||| | ||||||||| |||||
Sbjct 942 CACGTCACCAATGTGTAACTGTGTCGAAGGGTTTAAACCGAGGAACCCGCAAGAATGGGC 1001
Query 996 -TTCCGGAGACGTGACAGGTAGATGTCGAAGGAAGACA-CAGTTGACCTGCGGTGA-AGA 1052
|| |||||||||| |||||||||| ||||| |||| || |||| ||||||| | |||
Sbjct 1002 GTT-GGGAGACGTGAGGGGTAGATGTCAAAGGACGACACCA-TTGAACTGCGGT-AGAGA 1058
Query 1053 TAGGTTCTTT---CGGCTGATGAACATGAAGATACCGGCA-ACTACTGCAGCGATTGTGG 1108
| || |||| | ||||| ||| || ||| | || | | ||||| |||||||| ||||
Sbjct 1059 T-GG--CTTTACACAGCTGAGGAAAATAAAGTTGCCAG-ATACTACGGCAGCGATCGTGG 1114
Query 1109 ACAAGAGAATTGGGTTGAAAGAATGTGAAGAGAAGT--GC-AAGACACATTGTAACTGTA 1165
|||||||||||||||| || || ||| |||||| || || ||| || |||||| ||||
Sbjct 1115 ACAAGAGAATTGGGTTTAAGGATTGTAAAGAGAGGTGCGCTAAG--AC-TTGTAATTGTA 1171
Query 1166 CCGCGTATGCAAACT-CCGATATTCGAAATGGTGGTTCAGGTTGTATAATATGGATCGG- 1223
| |||| ||| || | |||| |||||||||||||||||||||||| | || ||||||||
Sbjct 1172 CTGCGTTTGCTAA-TACCGACATTCGAAATGGTGGTTCAGGTTGTGTGATTTGGATCGGA 1230
Query 1224 AGAGTTTCG-GGATATCCGAAATTACGCTGCAGACGGTCAAGATCTATT-TGTTCGATTG 1281
|| |||| | ||||||||||||||| ||||| || ||||||||||| || |||| || ||
Sbjct 1231 AG-GTTT-GTGGATATCCGAAATTATGCTGCCGATGGTCAAGATCT-TTATGTTAGAGTG 1287
Query 1282 GCAGCTGCAGAGT-TCGGGGAGAGAAGAAC-TATTAGAGGAAAAATCATAGGTTTGATTA 1339
|| ||||| | | ||||||| |||| ||| ||||| ||| |||| ||||||||||||
Sbjct 1288 GCCGCTGC-TAATATCGGGGACAGAA-AACACATTAGTGGACAAATTATAGGTTTGATTG 1345
Query 1340 TTGGAATCAGCTTAATGCTTGTTCTGAGTTTCATCATTTACTGTTTTTGGAAAAAGAAAC 1399
||||| | ||||| ||||| || ||||||||||||| ||||| ||||||||||||||||
Sbjct 1346 TTGGAGTAAGCTTGCTGCTTCTTGTGAGTTTCATCATGTACTGGTTTTGGAAAAAGAAAC 1405
Query 1400 AGAAGCGAGCAAGAGCAACCGCAGCACCT-ATCGGGTATCGAGACAGAATTCAAGAATTA 1458
|||||| |||||||||||| ||||| ||| || | |||||| || |||| || ||
Sbjct 1406 AGAAGCAAGCAAGAGCAACTGCAGCTCCTAAT-GTGTATCGCGAGAGAACTC---AA--C 1459
Query 1459 ATTATAACCAATGGGGTGGTAATGTCAAGTGGGAGACGCTTGCTTGG-G-G---AGGA-A 1512
| | ||||||||||||||||||| || || ||||||| |||| |||| | | | | |
Sbjct 1460 A-TCTAACCAATGGGGTGGTAATATCCAGCGGGAGACACTTGTTTGGCGAGAACAAAACA 1518
Query 1513 GAGGACTTGGAACTTCCACTCACGGAGTTTGAAACTGTTGTCATGGCCACCGAAAATTTC 1572
||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||
Sbjct 1519 GAGGAATTGGAACTTCCACTCACGGAGTTTGAAGCTGTTGTTATGGCAACCGATAATTTC 1578
Query 1573 TCTGATTCCAACATACTTGGACGA-GGTGGTTTCGGTATTGTATACAAGGGAAGGTTACT 1631
|||||||||||||||||||||| | |||||||| ||| | || |||| |||||||||||
Sbjct 1579 TCTGATTCCAACATACTTGGAC-AGGGTGGTTTTGGTGTCGTGTACATGGGAAGGTTACC 1637
Query 1632 TGACGGGTAAAAGATTGCAGTGAAAAGATTATCAGA-GATGTCATCT-CAAGGAACCAAT 1689
||||||| | ||||||| ||||||||| ||||| | | ||||| || ||||| ||||
Sbjct 1638 TGACGGGCAGGAGATTGCTGTGAAAAGACTATCA-ATGGTGTCA-CTGCAAGGGGTCAAT 1695
Query 1690 GAGTTCAAGAACGAGGTGAGGCTAATCGCAAGGCTTCAACACATCAACCTTGTCCGGCTT 1749
||||||||||||||||||| ||| ||||| || ||||||||||| || ||||| || |||
Sbjct 1696 GAGTTCAAGAACGAGGTGAAGCTGATCGCGAGACTTCAACACATAAATCTTGTTCGACTT 1755
Query 1750 CTTAGTTGTTGCATCTACGCGGATGAGAAGATATTGATTTATGAATACTTGGAGAATGGA 1809
|||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1756 TTTAGTTGTTGTATCTACGCGGATGAGAAGATATTGATCTATGAGTACTTGGAGAATGGA 1815
Query 1810 AGCCTTGATTCTCATCTCTTCGAAACAA-CCCAAAGCTCTAATAAGCTAAACTGGCAAAC 1868
||||| ||||||||||||||| ||| || ||||||||| |||||||||||||||||
Sbjct 1816 AGCCTCGATTCTCATCTCTTC-AAAAAAGTCCAAAGCTC---TAAGCTAAACTGGCAAAA 1871
Query 1869 GAGATTTAGCATTATCAATGGTATTGCTCGAGGACTTTTATACCTTCACCAAGATTCAAG 1928
|||||| | |||||| ||||||||||||||||||||||| || ||||||||||| ||| |
Sbjct 1872 GAGATTCAACATTATTAATGGTATTGCTCGAGGACTTTTGTATCTTCACCAAGACTCACG 1931
Query 1929 GTTTAAGATTATCCACAGAGATCTGAAGGCAAGCAATGTATTGCTTGATAAAAATATGAC 1988
||||||||||||||| |||||| |||| || ||||| || |||||||||||| ||||||
Sbjct 1932 GTTTAAGATTATCCATAGAGATTTGAAAGCGAGCAACGTCTTGCTTGATAAAGATATGA- 1990
Query 1989 T-CCAAAGATCTCGGATTTTGGGATGGCTAGGATATTTGAAAGGGACGAGACGGAAGCTA 2047
| || |||||||||||||| ||||||||||||||||||| | |||| ||||| |||||||
Sbjct 1991 TCCCGAAGATCTCGGATTTCGGGATGGCTAGGATATTTGGACGGGAGGAGACCGAAGCTA 2050
Query 2048 ACACCAGGAAGGTGGTTGGAACTTACGGCTACATGTCTCCCGAATACGCAATGGAGGGGA 2107
||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||
Sbjct 2051 GCACCAAGAAGGTGGTTGGAACATACGGTTACATGTCTCCAGAATACGCAATGGACGGGA 2110
Query 2108 TATTCTCGGTAAAATCGGATGTTTTCAGCTTCGGGGTTTTGGTTCTTGAGATTGTCAGTG 2167
||||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||
Sbjct 2111 TATTCTCAGTAAAATCGGATGTCTTCAGCTTTGGGGTATTGGTTCTTGAAATTGTCAGTG 2170
Query 2168 GAAAGAGGAACAGAGGATTCCACAACTCCG-GCCAAGACAATAATCTTCTCGGCTACACG 2226
|||||||||||||||||||| |||||| || ||| |||||||||||||| ||||||||
Sbjct 2171 GAAAGAGGAACAGAGGATTCTACAACT-CGAACCAGGACAATAATCTTCTTAGCTACACG 2229
Query 2227 TGGGAGAATTGGAAAGAAGGAAAAGGGCTAGAGATCGTCGATTCGATAATTGTAGATTCC 2286
||||| ||||||| ||||||||| |||||||||||| |||| | || ||||||| |
Sbjct 2230 TGGGATCATTGGAAGGAAGGAAAATGGCTAGAGATCGCCGATCCAATCATTGTAGGCACA 2289
Query 2287 TCATCATCAAT-GTCATTGTTCCAACCACATGAAGTCTTAAGATGCATACAGATTGGTCT 2345
|||||||| || |||| ||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 2290 TCATCATC-ATCGTCAACGTTCCGACCACACGAAGTCTTAAGATGCTTACAGATTGGTCT 2348
Query 2346 TTTATGTGTTCAAGAACGTGCAGAGGACAGACCAAAGATGTCGTCGGTGGTTTTAATGCT 2405
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2349 CTTATGTGTTCAAGAACGTGCAGAGGACAGACCAAAGATGTCGTCGGTGGTTTTCATGCT 2408
Query 2406 CGGTAGCGAAAAAGGGGAA-TACTTCAGCCCTAAACGGCCCGGTTATTGCGTCAGAAGAA 2464
|| | |||||||||||| ||| |||||| ||||| ||| ||||||||| || ||||||
Sbjct 2409 AGGAAATGAAAAAGGGGAAATACCTCAGCC-TAAACCGCCTGGTTATTGCATCGGAAGAA 2467
Query 2465 GTTCTCTTGATACTGCTGATTCGTCATCGAGTACAAAACG 2504
||| |||||| |||| |||||||||| |||||| ||||
Sbjct 2468 GTTTTCTTGAGACTG---ATTCGTCATCCAGTACACAACG 2504
Score = 89.8 bits (48), Expect = 9e-17
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 2512 CACCGACGACATCTTTGGTCTGTCCTCTGCACGTTCTTGAACACATAA 2559
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 CACCGACGACATCTTTGGTCTGTCCTCTGCACGTTCTTGAACACATAA 2350
> Ahg946052 jgi|Araly1|946052|scaffold_702281.1
Length=2606
Score = 806 bits (436), Expect = 0.0
Identities = 1149/1480 (78%), Gaps = 102/1480 (7%)
Strand=Plus/Plus
Query 1063 CGGCTGATGAACATGAAGA-TACCGGCA-ACTACTG-CAGCGATTGTGGACAAGA-GAAT 1118
||| ||| ||| ||||| | | |||| | ||||| | | || | ||| ||| ||| ||||
Sbjct 1098 CGGTTGAAGAAGATGAA-ATTGCCGG-ATACTAC-GACGGCTAGTGTAGAC-AGAGGAAT 1153
Query 1119 TGG-GTTGAAAGAATGTGAAGAG-AA-GTGCAAGACACATTGTAACTGTACCGCGTATGC 1175
||| ||| |||||||||||| || || || || | | |||||||||| || |||| |||
Sbjct 1154 TGGTGTT-AAAGAATGTGAACAGAAATGTTTAA-A-AGATTGTAACTGCACGGCGTTTGC 1210
Query 1176 AAACT-CCGATATTCGAAATGGTGGTTCAGGTTGTAT-AATATGGATC-GGAGAG-TTTC 1231
|| | | |||||||| |||||| || |||||| | | | |||| | || ||| |||
Sbjct 1211 GAA-TACGGATATTCGTGGTGGTGGGTCGGGTTGTGTGACT-TGGA-CTGGCGAGCTTT- 1266
Query 1232 GGGATATCCGAAATTACGCTGCA-GACGGTCAAGATCTATT-TGTTCGATTGGCAGCTGC 1289
|||||| | ||||| ||| | || ||||||||||| || ||| ||||||| ||| |
Sbjct 1267 TTGATATCAGGAATTATGCTAAAGGA-GGTCAAGATCT-TTACGTTAGATTGGCTGCTAC 1324
Query 1290 AGAGT-TCGGGGAGAGAAG-AACTATTAGAGGAAAAATCATAGGTTTGATTATTGGAATC 1347
|| | ||| ||| | ||| ||| | || | |||||||||||||| || ||||||| |
Sbjct 1325 TGA-TCTCGAGGACAAAAGAAAC-AGAAGTGCAAAAATCATAGGTTCGAGTATTGGAGTG 1382
Query 1348 AGC-TTAATGCTTGTTCTGAGTTTCATCAT-TTACTGT-TTTTGGAAAAAGAAACAGAAG 1404
||| || || || || | || ||||| || || || | || ||||||||||| ||||||
Sbjct 1383 AGCGTT-TTGATTCTTTTAAGCTTCATTATCTT-CT-TCTTGTGGAAAAAGAAGCAGAAG 1439
Query 1405 CGAGCAAGAGC-AACCGCAGCACCTATCGGGT-ATCGAGACAGAATTCAAGAATTAATTA 1462
||| ||| | | || | | || ||| | | | ||| || |||| | || ||| |
Sbjct 1440 CGATCAATA-CTAATTGAAACAGCTA-CTGTTGATCAAGTGAGAAGCCGAG-ATT--TGC 1494
Query 1463 TAACCAATGGGGTGGTAATGTCAAGTGGGAGACGC-T-TGCTTG-GGGAGGAAGA-GGAC 1518
||| || | |||||||| |||||| |||||| | | | || | | | || | |||
Sbjct 1495 TAATGAACGAAGTGGTAATATCAAGTAGGAGACACATAT-CTAGAGAAAACAATACAGAC 1553
Query 1519 --T-TGGAACTT-CCACTCACGGAGTTTGAA-ACTGTTGTCATGGCCACCGAAAATTTCT 1573
| | ||| || ||| | | |||||||||| | |||| ||||||||| || ||||| |
Sbjct 1554 GATCTCGAA-TTGCCATTGATGGAGTTTGAAGA-AGTTGCCATGGCCACAGACAATTTTT 1611
Query 1574 CTGA-T-TCCAACATA-CTTGGACGAGGTGGTTTCGGTATTGTATACAAGGGAAGGTTAC 1630
|| | | | ||||| | ||||||| ||||||||| ||||| || || ||||||||||| |
Sbjct 1612 CT-ACTGT-CAACA-AGCTTGGACAAGGTGGTTTTGGTATAGTTTATAAGGGAAGGTTGC 1668
Query 1631 TTGACGGGT-AA-AAGATTGCAGTGAAAAGATTATCAGAGATGTCA-TCTCAAGGAACCA 1687
|||| ||| || || || || ||||| ||||||||| ||| |||| | ||| || ||
Sbjct 1669 TTGA-TGGTCAAGAA-ATCGCGGTGAAGAGATTATCAAAGACGTCAGT-TCAGGGGACTG 1725
Query 1688 ATGAGTTCAAGAACGAGGTGAGGCTAATCGCAAGGCTTCAACACATCAACCTTGTCCGGC 1747
||||||||||||| ||||||| | || ||||||||||| ||||| |||||||| ||||
Sbjct 1726 ATGAGTTCAAGAATGAGGTGAAATTGATTGCAAGGCTTCAGCACATAAACCTTGTTCGGC 1785
Query 1748 TTCTTAG-TTGTTGCATCTACGCGGATGAGAAGATATTGATTTATGAATACTTGGAGAAT 1806
||||| | |||||| || | |||| ||||||||| |||||||| || |||||||| |||
Sbjct 1786 TTCTT-GCATGTTGCGTCGATGCGGGTGAGAAGATGTTGATTTACGAGTACTTGGAAAAT 1844
Query 1807 GGAAGCCTTGATTCTCATCTCTTCGA-AACAACCCAAAGCTCTAATAAGCTAAACTGGCA 1865
|||||| || |||||| | || || || | ||| |||||| ||||||||| |||||
Sbjct 1845 CTAAGCCTCGACTCTCATTTGTTTGACAA-ATCCCGAAGCTC---TAAGCTAAATTGGCA 1900
Query 1866 AACGAGATTTAGCAT-T-ATCAATGGTATTGCTCGAGGACTTTTATACCTTCACCAAGAT 1923
|| ||||||| | || | ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1901 AATGAGATTT-G-ATATCATCAATGGTATTGCTAGAGGACTTTTATATCTTCACCAAGAT 1958
Query 1924 TCAAGGTTTAAG-ATTATCCACAGAGATC-TGAAGGCAAGCAATGTATTGCTTGATAAAA 1981
||| ||||| || |||||||| ||||| | |||| ||||| || || ||||||||||||
Sbjct 1959 TCACGGTTT-AGAATTATCCATAGAGA-CTTGAAAGCAAGTAACGTCTTGCTTGATAAAT 2016
Query 1982 ATATGACTCCAAAGATCTCGGATTTTGGGATGGCTAGGATATTTGAAAGGGACGAGACGG 2041
|||||||||||||||||||||||||||| ||||||||||| |||| | |||| || || |
Sbjct 2017 ATATGACTCCAAAGATCTCGGATTTTGGAATGGCTAGGATCTTTGGACGGGATGAAACAG 2076
Query 2042 AAGCTAACACCAGGAAGGTGGTTGGAACTTACGGCTACATGTCTCCCGAATACGCAATGG 2101
|||||| || ||||||||||| ||||| ||||| || |||||||| ||||| |||||||
Sbjct 2077 AAGCTAGTACGAGGAAGGTGGTCGGAACCTACGGTTATATGTCTCCTGAATATGCAATGG 2136
Query 2102 AGGGGATATTCTCGGTAAAATCGGATGTTTTCAGCTTCGGGGTTTTGGTTCTTGAGATTG 2161
| |||||||||||| | || ||||||||||||||||| ||||| ||| ||||||||||
Sbjct 2137 ACGGGATATTCTCGATGAAGTCGGATGTTTTCAGCTTTGGGGTCTTGCTTCTTGAGATAA 2196
Query 2162 TCAGTGGAAAGAGGAACAGAGGATTCCACAACTCCGGCCAAGACAATAATCTTCTCGGCT 2221
| ||||| |||||||||| ||||||| |||| || | || ||| |||||||||||| |
Sbjct 2197 TAAGTGGCAAGAGGAACAAAGGATTCTACAATTCTGACCGTGACCTTAATCTTCTCGGTT 2256
Query 2222 ACACGTGGGAG-AATTGGAAAGAAGGAAAAGGGCTAGAGATCGTCGATTCGATAATTGTA 2280
|||| || |||||||||||||||||||||||||| ||| | ||| | || || |
Sbjct 2257 GTGTGTGG-AGGAATTGGAAAGAAGGAAAAGGGCTAGAAATCATAGATCCAATCATCACA 2315
Query 2281 GATTCCTCATCATCAATGT-CATTGTTCCAACCACATGAAGTCTTAAGATGCATACAGAT 2339
||||| | ||||||| || || | | ||| | |||| |||||||||||||||| ||
Sbjct 2316 GATTC-T--TCATCAACGTTCAG-G--C-AAC-A--TGAAATCTTAAGATGCATACAAAT 2365
Query 2340 TGGTCTTTTATGTGTTCAAGAACGTGCAGAGGACAGACCAAAGATGTCGTCGGTGGTTTT 2399
|||||| || ||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 2366 TGGTCTCTTGTGTGTTCAAGAACGTGCAGAGGACAGACCAATGATGTCCTCAATGGTTTT 2425
Query 2400 AATGCTCGGTAGCGAAA-AAGGGGAATACTTCAGCCCTAAA-CGGCCCGGTTATTGCGTC 2457
|||||||| ||||||| || | || | |||||| |||| || |||| |||||| |||
Sbjct 2426 GATGCTCGGAAGCGAAACAACGACTATTCCTCAGCC-TAAATCG-CCCGATTATTGTGTC 2483
Query 2458 AGAAGAAGTTCTCTTGATACTGCTGATTCGTCATCGAGTA 2497
| || ||| ||||||| |||| |||| || |||||||
Sbjct 2484 GGGAGGAGTCCTCTTGACACTG---ATTCTTCGTCGAGTA 2520
Score = 65.8 bits (35), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 2519 GACATCTTTGGTCTGTCCTCTGCACGTTCTTGAACACA 2556
|||||| |||||||||||||||||||||||||||||||
Sbjct 2413 GACATCATTGGTCTGTCCTCTGCACGTTCTTGAACACA 2376
> Ahg475686 jgi|Araly1|475686|fgenesh2_kg.2__816__AT1G65790.1
Length=2331
Score = 697 bits (377), Expect = 0.0
Identities = 759/939 (81%), Gaps = 44/939 (5%)
Strand=Plus/Plus
Query 1581 CAACATACTTGGACGAGGTGGTTTCGGTATTGTATACAAGGGAAGGTTACTTGACGGGTA 1640
|||||| ||||||| |||||||||||||||||| |||||||||| ||||||||| || |
Sbjct 1365 CAACATGCTTGGACAAGGTGGTTTCGGTATTGTTTACAAGGGAATGTTACTTGA-TGG-A 1422
Query 1641 AAAG--ATTGCAGTGAAA-AGATTATCAGAGATGTCATCTCAAGGAACCAATGAGTTCAA 1697
|||| || || || ||| ||| ||||| | ||||| || ||||| ||| |||||||||
Sbjct 1423 AAAGAAATCGCGGT-AAAGAGACTATCAAAAATGTCTTCACAAGGGACCGATGAGTTCAT 1481
Query 1698 GAACGAGGTGAGGCTAATCGCAAGGCTTCAACACATCAACCTTGTCCGGCTTCTTAGTTG 1757
||||||||| | |||| |||| |||||| ||||| |||||||||||||||||| ||||
Sbjct 1482 GAACGAGGTTCGATTAATTGCAAAGCTTCAGCACATAAACCTTGTCCGGCTTCTTGGTTG 1541
Query 1758 TTGCATC--TACGCGGATGAGAAGATATTGATTTATGAATACTTGGAGAATGGAAGCCTT 1815
|||| || || | || ||||||||| ||||| || || | |||||||||| |||||||
Sbjct 1542 TTGCGTCGATAAG-GG-TGAGAAGATGTTGATCTACGAGTTCTTGGAGAATCTAAGCCTT 1599
Query 1816 GATTCTCATCTCTTCGA-AACAACCCAAAGCTCTAATAAGC-TAAACTGGCAAACGAGAT 1873
|||||||||||||| || || ||||| | |||| ||| | |||| ||||||| |||||
Sbjct 1600 GATTCTCATCTCTTTGACAA-AACCCGACGCTC---TAA-CTTAAATTGGCAAAAGAGAT 1654
Query 1874 TTAG-CATTATCAATGGTATTGCTCGAGGACTTTTATACCTTCACCAAGATTCAAGGTTT 1932
|| | ||||||||||| |||||| |||||||| |||| ||||||||||||||| ||| |
Sbjct 1655 TT-GATATTATCAATGGAATTGCTAGAGGACTTCTATATCTTCACCAAGATTCACGGTGT 1713
Query 1933 AAGATTATCCACAGAGATC-TGAAGGCAAGCAATGTATTGCTTGATAAAAATATGACTCC 1991
| ||||||||| ||||| | |||| ||||| |||||||||||||||||||||||||||||
Sbjct 1714 AGGATTATCCATAGAGA-CTTGAAAGCAAGTAATGTATTGCTTGATAAAAATATGACTCC 1772
Query 1992 AAAGATCTCGGATTTTGGGATGGCTAGGATATTTGAAAGGGACGAGACGGAAGCTAACAC 2051
||||||||||||||||||||||||||||| |||| | |||| ||||| |||||||| ||
Sbjct 1773 GAAGATCTCGGATTTTGGGATGGCTAGGATCTTTGGACGGGAGGAGACAGAAGCTAATAC 1832
Query 2052 CAGGAAGGTGGTTGGAACTTACGGCTACATGTCTCCCGAATACGCAATGGAGGGGATATT 2111
|||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1833 AAGGAGGGTGGTTGGAACTTACGGCTACATGTCTCCAGAATATGCAATGGACGGGATATA 1892
Query 2112 CTCGGTAAAATCGGATGTTTTCAGCTTCGGGGTTTTGGTTCTTGAGATTGTCAGTGG-AA 2170
|||| | || ||||||||||||||||| ||||| ||| |||| |||||| | ||||| ||
Sbjct 1893 CTCGATGAAGTCGGATGTTTTCAGCTTTGGGGTCTTGCTTCTGGAGATTATAAGTGGCAA 1952
Query 2171 AGAGGAACAGAGGATTCCACAACTCCGGCCAAGA-CAATAATCTTCTCGGCTACACGTGG 2229
| || || | |||||| ||||||| || || | |||||| ||||| | ||||
Sbjct 1953 A-AGAAATAAAGGATTTTACAACTCAAACCGTGATCT-TAATCTCCTCGGTTTTGTGTGG 2010
Query 2230 GAGA-ATTGGAAAGAAGGAAAAGGGCTAGAGATCGTCGATTCGAT-AATTGTAGATTCCT 2287
|| ||||||| |||||||||||||||||||| || ||| |||| || ||||||| |
Sbjct 2011 -AGGCATTGGAAGGAAGGAAAAGGGCTAGAGATTGTAGATCCGATCAACA-TAGATTCTT 2068
Query 2288 CATCATCAATGTCATTGTTCCA-ACCACATGAAGTCTTAAGATGCATACAGATTGGTCTT 2346
| ||||||| | ||||| || ||||||| ||||||| || ||||| ||||||||
Sbjct 2069 CGTCATCAA---C---GTTCCGGAC-ACATGAAATCTTAAGGTGTATACAAATTGGTCTC 2121
Query 2347 TTATGTGTTCAAGAACGTGCAGAGGACAGACCAAAGATGTCGTCGGTGGTTTTAATGCTC 2406
|| ||||||||||||||||| || ||||| ||| |||||| ||||| | | ||||
Sbjct 2122 TTGTGTGTTCAAGAACGTGCCGAAGACAGGCCAGTGATGTCCTCGGTAATGGTGCTGCTT 2181
Query 2407 GGTAGCGAAAA-AGGGGAATA-CTTCAGCCCTAAACGGCCCGGTTATTGCGTCAGAAGAA 2464
|| ||||||| | || ||| || ||||| |||||| || |||| ||| | | ||||
Sbjct 2182 GGAAGCGAAACCACGGCTATAACT-CAGCC-TAAACGTCCTGGTTTTTGTATTGGGAGAA 2239
Query 2465 GTTCTCTTGATACTGCTGATTCGTCATCGAGTACAAAAC 2503
|| ||||||| |||||||| || || |||||| |||
Sbjct 2240 GTCCTCTTGAG---GCTGATTCTTCGTCAAGTACACAAC 2275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96482590585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5