BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21420.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329467 jgi|Araly1|329467|fgenesh1_pm.C_scaffold_7001694 942 0.0
> Ahg329467 jgi|Araly1|329467|fgenesh1_pm.C_scaffold_7001694
Length=606
Score = 942 bits (510), Expect = 0.0
Identities = 574/606 (95%), Gaps = 0/606 (0%)
Strand=Plus/Plus
Query 1096 ATGTTAGCTTTCACAAAGATTGCTAGATTCCAAGGGTTGCTGCAAACCCGGGCTACTTTA 1155
|||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||
Sbjct 1 ATGTTAGCTTTCACAAAGATGGCTAGATTCCAAGGGTCGCTGCAATCCCGGGCTACCTTA 60
Query 1156 TTGTTAATCCGAGACTACCACAAACAGCCTGTCAAAGTTGTGTGGAAGAAACCTGAAAAT 1215
|||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 61 TTGTTAATCCGAAACTACCATAAACAGCCTGTCAAAGTTGTGTGGAAGAAACCCCAAATT 120
Query 1216 GGACGGATAAAGCTAAACTTTGACGGATCCAGAGGAAGAGAAGGACAAGCCAGCATTGGA 1275
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGATGGATAAAGCTAAACTTTGACGGATCCAGAGGAAGAGAAGGACAAGCCAGCATTGGT 180
Query 1276 GGGGTATTCAGAAACCACAAAGCCGAGTTCCTTCTTGGGTACTCAGAATCCATAGGGGAA 1335
||| ||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 181 GGGATATTCAGAAACCACAAAGCTGAGTTCCTTCTTGGATACTCAGAATCTATAGGGGAA 240
Query 1336 GCCACAAGCACCATGGCAGAATTCGCAGCCCTCAAAAGAGGGCTCGAGCTGGCTCTAGAG 1395
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 241 GCCACAAGCACCATGGCAGAATTCGCAGCACTCAAAAGAGGGCTCGAGCTGGTTCTAGAG 300
Query 1396 AACGGGTTGACGGATCTATGGCTTGAAGGAGATGCCAAGATCATAATGGATATCATCTCG 1455
||||||| ||||||| ||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 301 AACGGGTGGACGGATATATGGCTCGAAGGAGACGCCAAGATCATAATGGATATAATCTCC 360
Query 1456 AGGAGGGGGAGATTGAGATGTGAAAAGACAAATAAGCATGTGAATTACATCAAAGTGGTT 1515
| ||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 361 AAGAGAGGGAGACTGAGATGTGAAAGGACAAATAAGCATGTGAATTACATCAATGTGGTT 420
Query 1516 ATGCCTGAGCTGAACAACTGCGTGTTGAGCCATGTTTACAGAGAAGGAAATCGAGTCGCT 1575
||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 ATGCCTGGGCTGAGCAACTGCGTGTTGAGCCATGTTTACAGAGAAGGGAATCGAGTCGCT 480
Query 1576 GATAAATTGGCTAAGTTAGGACATCAGTTTCAGGATCCTAAAGTCTGGAGGGTTCAGCCT 1635
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATAAACTGGCTAAGTTAGGACATCAGTTTCAGGATCCTAAAGTCTGGAGGGTTCAGCCT 540
Query 1636 CCGGAGATAGTTCTACCAATTATGCATGACGATGCAAAAGGTAAGATTGTTCTTAGAACA 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCGGAGATAGTTCTACCAATTATGCATGACGATGCAAAAGGTAAGATTGTTCTTAGAACA 600
Query 1696 AAATGA 1701
||||||
Sbjct 601 AAATGA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5