BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21430.1
Length=2815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946047 jgi|Araly1|946047|scaffold_702276.1 4176 0.0
Ahg949979 jgi|Araly1|949979|scaffold_801866.1 99.0 2e-19
> Ahg946047 jgi|Araly1|946047|scaffold_702276.1
Length=2854
Score = 4176 bits (2261), Expect = 0.0
Identities = 2659/2845 (93%), Gaps = 52/2845 (2%)
Strand=Plus/Plus
Query 1 ATGTCGGAGAACGAAATCGTCCCTGACGAGTTTCGTTGCAACCGCTCTGATGGTAAGCAA 60
||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 21 ATGTCGGAGAACGAAATTGTCCCGGACGAGTTTCGTTGTAACCGCTCCGATGGTAAGCAA 80
Query 61 TGGCGGTGCAAGAGACGAGCTTTAGAGGGGAAAAAGATGTGTGAGAG-TCATCACTCGCA 119
||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||
Sbjct 81 TGGCGGTGCAAGAGACGAGCTTTAGAGGGCAAAAAGATGTGCGAG-GCTCATCACTCGCA 139
Query 120 GCAAAGC-CTAAAGCGAAGTAAGCAGAAAGTTGCAGAGTCTTCTAAGCTTGTCAGATCAA 178
|| || | |||||| |||||||| |||||||| |||||||||| |||||| |||||||||
Sbjct 140 GC-AATCTCTAAAGAGAAGTAAGAAGAAAGTTCCAGAGTCTTCGAAGCTTCTCAGATCAA 198
Query 179 GAAGAGGAGGAGGAGATGAAGTGGCGTCTTCAGAGATCGAGCCAAACGAAAGCAGAATTA 238
| | | ||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||
Sbjct 199 G-A-A-GAGGAGGAGATGAAGCGACGTCTTCAGCGATCGAGCCAAACGAAAGCAGTATTA 255
Query 239 GGTCTAAGAGATTGGGGAAATCGAAGAGGAAGAGAGTGATGGGTGAAGCAGAGGCTATGG 298
|| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 256 GGGCTAAAAGATTGGGGAAATCGAAGAGGAAGCGAGTGATGGGTGAAGCAGAGGCTATGG 315
Query 299 ATGAAGCAGTGAAGAAGATGAAGTTGAAGAGAGGAGATTTGCAGTTGGATTTGATAAGGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 ATGAAGCAGTGAAGAAGATGAAGTTGAAGAGAGGAGATTTGCAGTTGGATTTGATAAGGA 375
Query 359 TGGTGTTGAAGAGAGAAGTTGAGAAGAGGAAGAGATTACCAAATA-G--TAATAATAAGA 415
||||||||||||||||||||||||||| ||||||||||||| ||| | || || ||||
Sbjct 376 TGGTGTTGAAGAGAGAAGTTGAGAAGATGAAGAGATTACCAGATACGAAGAAGAAGAAGA 435
Query 416 AGAA-GAG-----TAATGGAGGGTTTAGTGAATTTGTTGGAGAAGAGTTAACGAGGGTTC 469
|||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 436 AGAAGGAGAATAATAATGGAGGGTTTGGTGAATTTGTTGGAGAAGAGTTAACAAGGGTTC 495
Query 470 TTCCTAATGGTATTATGGCAATTTCTCCACCTTCTCCTACTACTAGTAATGTGTCTTCTC 529
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 496 TTCCTAATGGTATTATGGCAATTTCACCACCTTCTCCGACTACAAGTAATGTGTCTTCTC 555
Query 530 CTTGTGATGTTAAAGTTGGGGAAGAGCCAATTTCGATGATTAAAAGGAGGTTTAGGTCTA 589
||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |
Sbjct 556 CTTGTGATGTTAAAGTTGGGGAAGAGCCAATTTCGATGACTAAAAGAAGATTTAGGTCGA 615
Query 590 AGAACATTGAACCTTTGCCAATTGGGAAAATGCAGGTGGTTCCTTTCAAGGGTG-ATTTG 648
|||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 616 AGAACATTGAACCTCTGCCTGTTGGGAAAATGCAGGTGGTTCCTTTCAAGGG-GAATTTG 674
Query 649 GTTAATGGAAGGAAGGAAAAGAAGATGAGGTGTCATTGGTGTGGAACCAGAGGATTTGGG 708
|||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||
Sbjct 675 GTTAATGGAAGGAAAGAGAAGAGGAAGAGGTGTCATTGGTGTGGAACCAGAGGATTTGGG 734
Query 709 GATTTGATTAGTTGTTTGAGTTGTGAAAGAGAGTTCTTTTGCATAGATTGTATCGAGAAA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GATTTGATTAGTTGTTTGAGTTGTGAAAGAGAGTTCTTTTGCATAGATTGTATCGAGAAA 794
Query 769 AGGAACAAGGGATCGAAAGAAGAAGTTGAGAAAAAATGTCCTGTATGCCGTGGGTCATGT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 795 AGGAACAAGGGATCGAAAGAAGAAGTTGAGAAAAAATGTCCTGTATGCCGTGGATCATGT 854
Query 829 AGGTGCAAAGTTTGCTCAGTCACTAATTCTGGAGTCACTGAATGTAAGGATTCTCAGAGT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 AGGTGCAAAGTTTGCTCAGTCACTAATTCTGGAGTCACTGAATGTAAGGATTCTCAGAGT 914
Query 889 GTCAGGAGTGATATTGACAGGGTTTTGCATCTACATTATGCGGTGTGCATGCTACTTCCA 948
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 915 GTCAGGAGTGATATTGACAGGGTCTTGCATCTACATTATGCGGTGTGCATGCTACTTCCA 974
Query 949 GTACTAAAAGAAATCAATGCGGAACACAAAGTGGAGGTGGAAAATGACGCAGAAAAGAAA 1008
|||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 975 GTACTAAAAGAAATCAATGCAGACCACAAAGTGGAGGTGGAAATTGACGCAGAAAAGAAA 1034
Query 1009 GAGGGAAATCCAGCTGAACCACAAATCCATAGCTCTGAATTAACCTCTGACGATCGACAG 1068
|||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct 1035 GAGGGAAATCCAGCTGAACCTCAAATCCAAAGCTCTGATTTAACTTCTGATGATCGACAG 1094
Query 1069 CCCTGTAGCAATGGTCGTGACTTTGCCGTAGTGGATTTGCAAAGAATGTGCACACGCAGT 1128
|| | |||||||||||| || |||| | |||||||| ||||||| |||||||||||||
Sbjct 1095 --CTCT-GCAATGGTCGTGGCTCTGCCATTGTGGATTTTCAAAGAAGGTGCACACGCAGT 1151
Query 1129 TCCTCTGTTCTCAGGCTAAATTCTGACCAAGATCAGAGTCAAGAGAGCTTATCTAGAAAG 1188
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TCCTCTGTTCTCAGGCTAAGTTCTGACCAAGATCAGAGTCAAGAGAGCTTATCTAGAAAG 1211
Query 1189 GTTGGATCGGTTAAATGCTCGAATGGTATAAAATCTCCAAAAGTGTGTAAGCGGAAAGAA 1248
| ||||||| |||||||||| |||||| ||||||||| || |||||||||||||||||||
Sbjct 1212 GCTGGATCGATTAAATGCTCAAATGGTTTAAAATCTCTAACAGTGTGTAAGCGGAAAGAA 1271
Query 1249 GTCAAAGGGTGCAGCAATAACCtttttttGAGTCTATTCCCTCTGGAGTTGACAAGCAAG 1308
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1272 GTCAAAGGGTGCAGCAATAACCTTTCTTTGAGTCTATTCCCTCTGGAGTTGACAAGCAAG 1331
Query 1309 TTAGAGATCAGTGCAGAGGAAGTAGTCAGTTGCTATGAGTTGCCTGAAATTTTAGATAAA 1368
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1332 TTAGAGATCAGTGCAGAGGAAGTAGTCAGTTGCTATGAGTTGCCTGAAATCTTAGATAAA 1391
Query 1369 TATTCGGGATGTCCATTTTGTATTGGAATGGAAACGCAATCTAGTAGTAGCGACAGCCAT 1428
| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1392 TTTTCGGGATGTCCGTTTTGTATTGGAATTGAAACGCAATCTAGTAGTAGCGACAGCCAT 1451
Query 1429 TTGAAAGAAGCATCCAAGACAAGAGAAGACGGAACTGGTAACTTCTTATACTACCCCACA 1488
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 1452 TTGAAAGAAGCATCCAAGAGAAGTGAAGACGGAACTGGTAACTTTTTATACTACCCCACA 1511
Query 1489 GTGCTGGATTTTCATCAAAACAATCTGGAACATTTTCAGACACACTGGAGTAAAGGCCAT 1548
||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1512 GTGATGGATTTTCATCAAAACAATCTCGAACACTTTCAGACACACTGGAGTAAAGGCCAT 1571
Query 1549 CCTGTAATAGTTCGTAGTGTGATAAAGAGTGGTTCAAGCCTGAATTGGGATCCAGTAGCC 1608
||||||||||||||||||||| ||||||| |||||||| || ||||||||||||||||||
Sbjct 1572 CCTGTAATAGTTCGTAGTGTGTTAAAGAGAGGTTCAAGGCTTAATTGGGATCCAGTAGCC 1631
Query 1609 TTGTTCTGTCACTATCTTATGAACAGAAACAACAAAACCGGTAATACTACTGATTGTATG 1668
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1632 ATGTTCTGTTGCTATCTTATGAACAGAAACAGCAAAACCGGTAATAGTACTGATTGTATG 1691
Query 1669 GATTGGTTTGAGGTAGAAATTGGTGTCAAGCAAttttttttGGGGTCTTTGAGAGGAAAG 1728
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1692 GATTGGTTTGAGGTAGAAATTGGTGTAAAGCAATTTTTTTTGGGGTCTTTGAGAGGAAAG 1751
Query 1729 GCTGAGACTAATACTTGTCAAGAAAGGCTGAAGCTGGAGGGATGGCTTTCATCTTCATTG 1788
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1752 GCTGAGACTAACACTTGTCAAGAAAGGCTGAAGCTGGAGGGATGGCTTTCATCTTCCTTG 1811
Query 1789 TTTAAAGAACAGTTCCCAAATCATTACGCTGAAATACTGAATATTTTACCAATCTCCCAT 1848
|||||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||||
Sbjct 1812 TTTAAAGAACAGTTCCCAAATCATTATGCTGAAATTCTGAATATCTTACCCATTTCCCAT 1871
Query 1849 TACATGGATCCAAAGCGCGGTCTACTAAATATTGCAGCCAACCTACCTGACACTGTACAA 1908
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1872 TACATGGATCCAAAGCGCGGTCTACTAAATATTGCAGCCAGCCTACCTGACACTGTACAA 1931
Query 1909 CCACCCGATTTTGGCCCATGCCTCAATATTTCATACAGGAGTGGTGAAGAATATGCACAG 1968
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1932 ACACCCGATTTTGGTCCATGCCTCAACATTTCATACAGGAGTGGTGAAGAATTTGCACAC 1991
Query 1969 CCTGATTCTGTGAAGAAGTTAGGTTTTGAAACTTGTGACATGGTTGATATCTTGTTATAT 2028
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1992 CCTGATTCTGTGAAGAAGTTAGGTTTCGAAACTTGTGACATGGTTGATATCTTGTTATAT 2051
Query 2029 GTCACAGAAACACCTGTATCCACAAACCAGATTTGTAGGATAAGAAAGCTAATGAAAAAC 2088
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2052 GTCACAGAAACACCTGTATCCACAAAACAGATTTGTAGGATAAGAAAGCTAATGAAAAAT 2111
Query 2089 ATCGGAAGAGTAAGATCTAAAAATCCGGCAAAGGGGAGGGAAAGCAGATTTGATAA-GG- 2146
||||||||||||||||||||||| || | |||||||||||| |||||||||||||| ||
Sbjct 2112 ATCGGAAGAGTAAGATCTAAAAACCCAGAAAAGGGGAGGGAGAGCAGATTTGATAAGGGA 2171
Query 2147 --GAAA-GA-A-A---C-G-AG---A---T-------A--GGTTGGATGACTATTCCAGT 2181
|||| || | | | | || | | | |||||||||||||| |||||
Sbjct 2172 AAGAAACGAGATAGGTCTGAAGCATATGCTCAGAGAGATTGGTTGGATGACTATCCCAGT 2231
Query 2182 TCTGATTCAGAATCTTCACAACACTGTTTAGGCGCTAAATGCAGAGGCAGTGAGTTTGAG 2241
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2232 TCTGATTCAGAATCGCCACAACACTGTTTAGGTGCTAAATGCAGAGGCAGTGAGTTTGAG 2291
Query 2242 GGAGAGGAAAGAGAAAGTTGCAACTACTCTTGTGAAGAAGAGAGCCTAAGCAACACTTAT 2301
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 2292 GGAGAGGAAAGAGAAAGTTGCAACGACTCTTGTGAAGAAGAAAGCCTAAGCAATTCTTAT 2351
Query 2302 GGTGCCCAGTGGGATGTATTCCAAAAACAAGATGTTTCTAAACTTCTTGAGTATATTAAG 2361
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2352 GGTGCCCAGTGGGATGTATTCCAGAAACAAGATGTTTATAAACTTCTTGAGTATATTAAG 2411
Query 2362 AACCACTCTCTGGAGCTAGAATCCATGGATTCCAGCaaaaaa-aaGGTGAGTCATCCATT 2420
||||||||||| ||||||||| ||||||||||| |||||||| || |||||||||||| |
Sbjct 2412 AACCACTCTCTCGAGCTAGAACCCATGGATTCCGGCAAAAAAGAA-GTGAGTCATCCACT 2470
Query 2421 ACTTGAGCAGAGTTACTATCTTGATGAGTATCACAAAGCAAGGCTTAAGGAAGAATTTGA 2480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2471 ACTTGAGCAGAGTTACTATCTTGATGAGTATCACAAAGCAAGGCTTAAGGAAGAATTTGA 2530
Query 2481 CGTTGAACCATGGAGTTTTGATCAATGTGTTGGGGAAGCAGTCATCCTCCCTGCTGGATG 2540
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2531 CATTGAACCATGGAGTTTTGATCAATGTGTTGGGGAAGCAGTCATCGTCCCTGCTGGATG 2590
Query 2541 TCCATACCAAATTAGAAAGAATAAGTCTTGTGTAAATGCGGTTCTGAAGTTTCTGTCACC 2600
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2591 TCCATACCAAAACAGAAAGAATAAGTCATGTGTAAATGCTGTTCTGAAGTTTCTGTCACC 2650
Query 2601 TGAGCACGTTAGCGAATCTATTAAACGAGTG-AAGGAGCTCAATCAACTTCCTCAGAGCG 2659
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||
Sbjct 2651 TGAGCACGTTTCCGAATCTATTAAACGAGTGGAAG-AGCTCAATCAACTTCCTCAGCGCG 2709
Query 2660 TCAAATCGAAAGCAAATAAGATTGAGGTGAAGAAAATGGCGATTCATAAAATCAGCGAAG 2719
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2710 TCAAAACGAAAGCAAATAAGATTGAGGTGAAGAAAATGGCTATTCATAAAATCAGCGAAG 2769
Query 2720 CTGTAAAGGAAATTCGGGAACTCACATCTTCGGATTCAACTGGTGCATTGAGATTATATA 2779
||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 2770 CTGTAAAGGAAATCCGGGAGCTCACATCTTCGGATTCAACTGGTGCATCGAGATTATACA 2829
Query 2780 ACTAGAGCTAGAGGTACCAATCTTG 2804
|||||||||||||||||||||||||
Sbjct 2830 ACTAGAGCTAGAGGTACCAATCTTG 2854
> Ahg949979 jgi|Araly1|949979|scaffold_801866.1
Length=272
Score = 99.0 bits (53), Expect = 2e-19
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1712 GGTCTTTGAGAGGAAAGGCTGAGACTAATACTTGTCAAGAAAGGCTGAAGCTGGAGGGAT 1771
||| ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct 160 GGTTTTTGAGAGGAAAGGCCGAGACTAACACTTATCAAGAAAGGCTGAAGCTGGAGGGAT 219
Query 1772 GGCTT 1776
|||||
Sbjct 220 GGCTT 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106233693305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5