BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21440.1
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1 1731 0.0
Ahg900325 jgi|Araly1|900325|Al_scaffold_0004_975 60.2 4e-08
> Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1
Length=1186
Score = 1731 bits (937), Expect = 0.0
Identities = 1118/1203 (93%), Gaps = 21/1203 (2%)
Strand=Plus/Plus
Query 1 ACGACCTTTTGTTTCTCTCTTCTCTATTAATACTATAGTTTTCCTCAAACTCTCTGATTA 60
|||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 1 ACGACCTTTTGTTTCTCTCTTCTCTATTCATA-T-TA-TTTTCCTCAAACTCTCTGATTA 57
Query 61 GCTCATAAATACTAAACCAGTTGACCAtttttttCTGATAAACAATCAATGGCAAGGTCA 120
|||||||| ||||||||| | | |||||||||||||||||||||| |||||||
Sbjct 58 GCTCATAATTACTAAACC-----A--A---TTTTCTGATAAACAATCAATGGGAAGGTCA 107
Query 121 CCTTGTTGCGAGAAGAACGGACTCAAGAAAGGGCCTTGGACATCTGAAGAAGACCAGAAG 180
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 108 CCTTGTTGCGAGAAGAACGGGCTCAAGAAAGGGCCATGGACATCTGAAGAAGACCAGAAG 167
Query 181 CTTGTTGACTATATCCAGAAACATGGTTATGGTAACTGGAGAACCCTCCCCAAAAATGCC 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CTTGTTGACTATATCCACAAACATGGTTATGGTAACTGGAGAACCCTCCCCAAAAATGCT 227
Query 241 GGTTTGCAAAGATGTGGCAAAAGTTGTAGGTTAAGGTGGACTAATTATCTCCGACCAGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GGTTTGCAAAGATGTGGCAAAAGTTGTAGGTTAAGGTGGACTAATTATCTCCGACCAGAT 287
Query 301 ATAAAGCGAGGAAGGTTCTCTTTTGAGGAAGAAGAAACCATTATTCAGCTTCATAGCTTC 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 288 ATAAAGCGAGGAAGGTTCTCTTTCGAGGAAGAAGAAACCATTATTCAGCTTCATAGCTTC 347
Query 361 TTAGGAAACAAGTGGTCTGCGATTGCGGCGCGTTTACCAGGAAGAACAGATAATGAGATC 420
||||||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||
Sbjct 348 TTAGGAAACAAGTGGTCGGCGATTGCGGCCCGTTTGCCTGGAAGAACAGATAACGAGATC 407
Query 421 AAGAACTTTTGGAACACTCATATAAGAAAGAAGCTACTTAGAATGGGGATTGATCCAGTG 480
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 408 AAGAACTTCTGGAACACTCATATAAGAAAGAAGTTACTTAGAATGGGGATTGATCCAGTG 467
Query 481 ACTCACAGTCCACGACTCGATCTCCTCGATATCTCATCCATCTTAGCTTCATCTCTATAC 540
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 468 ACTCACAGTCCGCGTCTCGATCTCCTCGATATCTCATCCATCTTAGCTTCGTCTCTATAC 527
Query 541 AATTCATCTTCACATCACATGAACATGTCA--AG-ACTCATGATGGATACTAATCGTCGT 597
||||||||||||||||| |||||||| || || |||||||||||||||| ||||||||
Sbjct 528 AATTCATCTTCACATCATTTGAACATGCCAGGAGGACTCATGATGGATACTCATCGTCGT 587
Query 598 CATCACCAGCAACATCCATTGGTTAACCCCGAGATACTCAAGCTCGCTACCTCTCTCTTC 657
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 588 CATCAGCAGCAACATCCATTGTTTAACCCCGAGATACTCAAGCTCGCAACCTCTCTCTTC 647
Query 658 TCTCAAAATCAAAACCAAAACCTTGTGGTGGATCATGACTCGAGAACTCAAGAGAAGCAA 717
|||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 648 TCTCAAAACCAAAACCAAAACCTTGTGGTGGATCATGACTCAAGAACTCAACAGAAGCAA 707
Query 718 ACAGTTTATAGCCAAACCGGAGTAAACCAATACCAAACCAACCAATATTTCGAGAACACG 777
||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 708 ACAGTGCATAACCAAACCGGAGTAAACCACTACCAAACCGACCAATATTTCGAGAACACG 767
Query 778 ATTACTCAAGAACTCCAATCTTCCATGCCACCATTCCCCAATGAAGCTCGTCAGTTTAAC 837
|||||||||||||||||||||||||||| ||||| ||||||||||||| | ||| |||
Sbjct 768 GTTACTCAAGAACTCCAATCTTCCATGCCGCCATTTCCCAATGAAGCTCAT--GTT-AAC 824
Query 838 AACATGGATCATCACTTCAATGGTTTTGGAGAACAAAATCTTGTTTCAACTTCTACTACG 897
||||||| |||||||||||||||||||||| ||||| ||| | ||||||||| || |||
Sbjct 825 GACATGGACCATCACTTCAATGGTTTTGGAGGACAAACTCTAGCTTCAACTTCGACAACG 884
Query 898 TCAGTCCAAGATTGCTATAATCCGTCATTCAACGATTATTCAAGTTCAAATTTTGTCTTG 957
|| ||||||||||| |||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 885 TCTCTCCAAGATTGCAATAATCTATCGTTCAATGATTATTCAAGTTCTAATTTTGTATTA 944
Query 958 GATCCTTCTTATTCGGATCAGAGCTTCAACTTCGCAAATTCGGTCTTAAACACGCCATCC 1017
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 945 GATCCTTCTTATTCGGATCAGAGCTTCAACTTCGCTAATTCGGTCTTGAACACGCCATCT 1004
Query 1018 TCGAGCCCGAGCCCGACTACGTTAAACTCGAGTTACATCAATAGTAGCAGTTGCAGCACT 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TCAAGCCCGAGCCCGACTACGTTAAACTCGAGTTACATCAATAGTAGCAGTTGCAGCACT 1064
Query 1078 GAGGATGAAATAGAAAGCTATTGCAGTAATCTCATGAAGTTTGATATTCCCGATTTCTTG 1137
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1065 GAGGATGAAATGGAAAGCTATTGCAGTAATCTCATGAAGTTTGATATTCCTGATTTCTTG 1124
Query 1138 GACGTTAATGGTTTTATTATATAATTCCAAGAAACAAAATAAAAC-TCGAGTGGGATACA 1196
|||||||||||||||||||||||||||||||||| || ||||||| | |||||||||| |
Sbjct 1125 GACGTTAATGGTTTTATTATATAATTCCAAGAAAGAACATAAAACCT-GAGTGGGATAGA 1183
Query 1197 GTT 1199
|||
Sbjct 1184 GTT 1186
> Ahg900325 jgi|Araly1|900325|Al_scaffold_0004_975
Length=1164
Score = 60.2 bits (32), Expect = 4e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 400 GGAAGAACAGATAATGAGATCAAGAACTTTTGGAA 434
||| |||||||||||||||||||||||||||||||
Sbjct 316 GGACGAACAGATAATGAGATCAAGAACTTTTGGAA 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50131635855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5