BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21445.1
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492739 jgi|Araly1|492739|fgenesh2_kg.7__2172__AT4G21445.1 850 0.0
> Ahg492739 jgi|Araly1|492739|fgenesh2_kg.7__2172__AT4G21445.1
Length=630
Score = 850 bits (460), Expect = 0.0
Identities = 587/645 (91%), Gaps = 21/645 (3%)
Strand=Plus/Plus
Query 28 TCTAACTCACCGAGAAAGAAAAGTAAAGAGAGTTTGGTGTCACTATGAACATTGCCATTC 87
||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||| |
Sbjct 1 TCTAACTCACCGAGAAAGAAAAGCAAAGAGAGTTTGGTATAACTATGAACATTCCCA--C 58
Query 88 ATAATTACCGTCACTCAAAATTCATCGTAAATCCTCACATAGACAAGACTTTTGCAAGGA 147
| ||||||| |||||||| |||||| |||||||||| ||||||||||||||||| ||||
Sbjct 59 -TTATTACCGCCACTCAAACTTCATCTTAAATCCTCATATAGACAAGACTTTTGCGAGGA 117
Query 148 CTCGACAGGCAAGATCAAATAATATTACATTCATGACAAGTACTCATGGAAGAAGAAGAA 207
||||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 118 CTCGACAATCAAGATCAAATAATATCACATTCATGACAAGAACTCAAGGAAGAAGAAGAA 177
Query 208 CGATGGGACTTTGTTTGGTAAGAGCAAGTGCCGAGACCGGAGAAGAAGAATCCGA-CGAT 266
||||||||| ||||||||||||||||||||||| |||||||||||||||| | | ||||
Sbjct 178 TGATGGGACTGTGTTTGGTAAGAGCAAGTGCCGACACCGGAGAAGAAGAAT-CTAGCGAT 236
Query 267 CAAAACAAGCCTGAGAGAAGAAGTTTCTTGAGCTTAGCAGAAGCTGGTCTAGTCGAAATC 326
|||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 237 CAAAGCAAGCCTGAGAGAAGAAGTTTCTTGAGCTTAGCAGAAGCCGGTCTTGTCGAGATC 296
Query 327 TCAGGCCTTGGTGCACACGAGAAGTTTCTCTGTCGACTAACGATATCATCATTGAATTTG 386
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 297 TCGGGCCTTGGTGCACACGAGAAGTTTCTCTGTCGACTAACGATATCGTCGTTGAATTTG 356
Query 387 CTAAGAGTGATATCAGAGCAAGAAGGATGTTCAATAGAAGAGTTGAATGCTGGCAAAATA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTAAGAGTGATATCAGAGCAAGAAGGATGTTCAATAGAAGAGTTGAATGCTGGCAAAATA 416
Query 447 TGTGATTGGTTCCTTAAGGACAAGCTGAAGAGAGAGCATAACATTGAATCTGCTGTTCTT 506
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGTGACTGGTTCCTTAAGGACAAGCTGAAGAGAGAGCATAACATTGAATCTGCTGTTCTT 476
Query 507 CAATGGGATGATCCCGATTTTCCTTTTTAAATATCCTTATTTT---TT-ACATTCAAGCC 562
|||||||||||||||||||||||||||||||||| | |||||| || | ||| |||||
Sbjct 477 CAATGGGATGATCCCGATTTTCCTTTTTAAATATTCGTATTTTACCTTTA-ATT-AAGCC 534
Query 563 ACACAAAAGTATGATCATTAACAAGGTGAATATGTATCGTAAGTCTTAATTAGTCTATTG 622
|||| | | | ||||||||||||||||||| ||| || |||||||| ||||||
Sbjct 535 ACACTAGCTTC-G-TCATTAACAAGGTGAATATATAT-GT--GTCTTAAT----CTATTG 585
Query 623 TGGTCTGACTAGGAAAATATAAACCTTTTGTTAAGTCCTACAATA 667
|||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 586 TGGTCTGACTAGGAAA-TATAAACCCTTTGTTAAGTCCTACTATA 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26228566896
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5