BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21450.3
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492738 jgi|Araly1|492738|fgenesh2_kg.7__2171__AT4G21450.1 1170 0.0
Ahg490178 jgi|Araly1|490178|fgenesh2_kg.6__3312__AT4G05060.1 470 2e-131
Ahg490156 jgi|Araly1|490156|fgenesh2_kg.6__3290__AT4G05060.1 470 2e-131
> Ahg492738 jgi|Araly1|492738|fgenesh2_kg.7__2171__AT4G21450.1
Length=1259
Score = 1170 bits (633), Expect = 0.0
Identities = 713/751 (95%), Gaps = 8/751 (1%)
Strand=Plus/Plus
Query 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 514 ATGAGCCTGGGAAGCAAGTAAGGAGCGCTATTAAGATTAAAAATACCAGCAAATCACATG 573
Query 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 574 TAGCCTTCAAGTTTCAAACAACTGCACCGAAGAGTTGCTTCATGCGTCCACCTGGTGCTA 633
Query 715 TTCTTGCTCCTGGAGAGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAGA 774
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 634 TTCTTGCTCCTGGAGAGACTATTATTGCTACTGTGTTCAAATTTGTTGAGCCTCCTGAGA 693
Query 775 ATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAGG 834
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 694 ATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTTAAATTTAAAATCATGAGCCTGAAAG 753
Query 835 TGAAAGGTCCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTCTA 894
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 754 TGAAAGGTCCAATGGACTATGTGCCTGAGCTGTTTGATGAGCAAAAGGATGATGTGTCTA 813
Query 895 AGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCCAACCCTGCATTGGAAA 954
| |||||||||||||||||||||||| ||||||| |||||| |||||||||| |||| |
Sbjct 814 AAGAGCAAATATTGCGTGTGATTTTCCTGGATCCCGAGCGCCCCAACCCTGCGCTGGACA 873
Query 955 AACTGAAGCGTCAATTAGCAGAAGCGGATGCAGCGGTGGAGGCACGAAAGAAACCTCCAG 1014
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 AACTGAAGCGCCAGTTAGCAGAAGCGGATGCAGCGGTGGAGGCACGAAAGAAACCTCCAG 933
Query 1015 AGGAAACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGGAAGGAGCGTA 1074
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 934 AGGAAACAGGTCCAAAGATCATTGGAGAAGGGCTTGTGATCGATGAATGGAAGGAGCGTC 993
Query 1075 GAGAGAGATATCTTGCACAGCAACAAGGCGAAGGAGCTGACTCTGTCTGAGAGACTAAAA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GAGAGAGATATCTTGCACAGCAACAAGGCGAAGGAGCTGACTCTGTCTGAGAGACTAAAA 1053
Query 1135 GAGTTTTCTCAGGACAAAAACAAGTGCGCTTGTGAAGATGAAGAAGAAG--G-GACCGCT 1191
||||||||||||||||||||| |||| ||||||||||| |||||||||| | ||||||
Sbjct 1054 GAGTTTTCTCAGGACAAAAACTAGTGTGCTTGTGAAGAAGAAGAAGAAGAAGAGACCGCG 1113
Query 1192 ATATTGAATTTATATGCTAACTTCTAGATTCATGATGCAATATATAAGGATCATGCTGGT 1251
||||||||||||||||||||||||||||||||| ||||||| || | |||||||| ||||
Sbjct 1114 ATATTGAATTTATATGCTAACTTCTAGATTCATAATGCAATCTA-A-GGATCATGTTGGT 1171
Query 1252 aaaaaaaaaaGACAATGAAGGAAACTTTTTTCATGTAAAAAAGAAATGTAAACTTGGGTT 1311
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1172 AAAAAAAAAAGACAATGAAG-AAACTTTT--CATGTAAAAAAGAAATGTAAACTTGGGTT 1228
Query 1312 TGATGATAATGAATTGTTCATGTTAAGGACT 1342
||||||||||||||||||||||||||| |||
Sbjct 1229 TGATGATAATGAATTGTTCATGTTAAGTACT 1259
Score = 710 bits (384), Expect = 0.0
Identities = 475/515 (92%), Gaps = 22/515 (4%)
Strand=Plus/Plus
Query 43 AACACGGACGCGAAATCAACCAATTAAATCCACTtctctctcaccatctcacgtccga-- 100
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AACACGGACGCGAAATCAACCAATTAAATCCACTT-TCTCTCACCATCTCACGTCCGATC 59
Query 101 tctctc-ctctctgagctctcATCACGAGTCAACCCCTTTCTCCGTCGAAATTCGCATGC 159
|||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||||||
Sbjct 60 TCTCTCTCTCTCTGAGCTCTCTTCACGAGTCAACCCC-TTCTCTGTCGCAATTCGCATGC 118
Query 160 TTAAACTCT--GAGAGAAGAAGATGACTATGACGGAGGAGAAACCAACTTCCGACGGCAA 217
|| | || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTCACCTGTAAGAGAGAAGAAGATGACTATGACGGAGGAGAAACCAACTTCCGACGGCAA 178
Query 218 AGGAGGTTGGGGTTTCTTCAAGATTCCATTTCGTAACTCAAGCGGTCACAGAAACGCCGC 277
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 179 AGGAGGTTGGGGTTTCTTCAAGATTCCATTTCGTAACTCAAGTGGTCACGGAAACGCCGC 238
Query 278 TTCAAGTGCTGCTACTTCTCCGTTTCCATCTGGAGcttcttcttcttctacttcttctca 337
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 239 TTCAAGTGCTGCTACTTCTCCGTTTCCATCGGGTGCTTCGTCTTCTTCTACTTCTTCTCA 298
Query 338 tctacataaccatcatcaacatca---tca------tca--a-catca-c--catcagca 382
| | |||||||||||||||||||| ||| ||| | ||||| | ||||||||
Sbjct 299 TATCCATAACCATCATCAACATCAACATCAACAACATCACCATCATCATCATCATCAGCA 358
Query 383 ccatcatcaGCTTGGTTATAACGGTCCTCACGGTGATGGATCGGGTCAAAATCAACATCC 442
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 359 TCATCATCAGCTTGGTTATAACGGTCCTCATGGTGATGGATCGGGTCAAAATCAACACCC 418
Query 443 GACTCCTTCTCCTTCAGTTTCATCTGTTGCTAAGTCTTTTCTTCCTACTAAACGAAGATT 502
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 419 GACTCCTTCTCCTTCAGTTTCTTCTGTTGCTAAGTCGTTTCTTCCTACTAAACGAAGATT 478
Query 503 GAAGCTTGATCCTTCTGAGAAACTCTATTTTCCTT 537
|||||||||||||||||||||||||||||||||||
Sbjct 479 GAAGCTTGATCCTTCTGAGAAACTCTATTTTCCTT 513
> Ahg490178 jgi|Araly1|490178|fgenesh2_kg.6__3312__AT4G05060.1
Length=1061
Score = 470 bits (254), Expect = 2e-131
Identities = 434/519 (84%), Gaps = 19/519 (4%)
Strand=Plus/Plus
Query 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654
||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||
Sbjct 392 ATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATG 451
Query 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714
|||| || |||||||||||||| | || ||||||||||| ||||| || |||||||||
Sbjct 452 TAGCGTTTAAGTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTA 511
Query 715 TTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAG 773
||||| ||||||| | ||| ||||| || || || ||||| ||||||||||||||||||
Sbjct 512 TTCTTTCTCCTGGGGAAGA-AATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAG 570
Query 774 AATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAG 833
|||||||| ||||| ||||| |||| |||| | || ||||||||||||||||||||||||
Sbjct 571 AATAATGAAAAGCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAG 630
Query 834 GTGAAAGGT-CCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTC 892
||||| || |||| |||||| ||||||||||||| || |||||||| ||| |||||||
Sbjct 631 ATGAAA-GTCCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTC 689
Query 893 TAAGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCC-AAC-CC-TGCATT 949
| |||||||| || |||||||| | ||||||||||| || | || ||| || || | |
Sbjct 690 TGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAAC-CCTAACTCCATG-A-T 746
Query 950 GGAAAAACTGAAGCGTCAATTAGCAGAAGCGGATGCAGC-GGTGGAGGCACGAAAGAAA- 1007
||| ||| ||||| ||||||| || ||||||||||| || | | || ||||| ||||||
Sbjct 747 GGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAGAAAG 805
Query 1008 CCTCCAGA-GG-A-AACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGG 1064
| | |||| || | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 806 CAT-CAGAGGGTATTGTTGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGG 864
Query 1065 AAGGAGCGTA-GAGAGAGATATCTTGCACAGCAACAAGG 1102
||| | || | ||||||||||||||||||||||||||||
Sbjct 865 AAGCAACG-ACGAGAGAGATATCTTGCACAGCAACAAGG 902
> Ahg490156 jgi|Araly1|490156|fgenesh2_kg.6__3290__AT4G05060.1
Length=1010
Score = 470 bits (254), Expect = 2e-131
Identities = 434/519 (84%), Gaps = 19/519 (4%)
Strand=Plus/Plus
Query 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654
||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||
Sbjct 341 ATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATG 400
Query 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714
|||| || |||||||||||||| | || ||||||||||| ||||| || |||||||||
Sbjct 401 TAGCGTTTAAGTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTA 460
Query 715 TTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAG 773
||||| ||||||| | ||| ||||| || || || ||||| ||||||||||||||||||
Sbjct 461 TTCTTTCTCCTGGGGAAGA-AATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAG 519
Query 774 AATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAG 833
|||||||| ||||| ||||| |||| |||| | || ||||||||||||||||||||||||
Sbjct 520 AATAATGAAAAGCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAG 579
Query 834 GTGAAAGGT-CCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTC 892
||||| || |||| |||||| ||||||||||||| || |||||||| ||| |||||||
Sbjct 580 ATGAAA-GTCCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTC 638
Query 893 TAAGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCC-AAC-CC-TGCATT 949
| |||||||| || |||||||| | ||||||||||| || | || ||| || || | |
Sbjct 639 TGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAAC-CCTAACTCCATG-A-T 695
Query 950 GGAAAAACTGAAGCGTCAATTAGCAGAAGCGGATGCAGC-GGTGGAGGCACGAAAGAAA- 1007
||| ||| ||||| ||||||| || ||||||||||| || | | || ||||| ||||||
Sbjct 696 GGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAGAAAG 754
Query 1008 CCTCCAGA-GG-A-AACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGG 1064
| | |||| || | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 755 CAT-CAGAGGGTATTGTTGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGG 813
Query 1065 AAGGAGCGTA-GAGAGAGATATCTTGCACAGCAACAAGG 1102
||| | || | ||||||||||||||||||||||||||||
Sbjct 814 AAGCAACG-ACGAGAGAGATATCTTGCACAGCAACAAGG 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51764642955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5