BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21460.1
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479322 jgi|Araly1|479322|fgenesh2_kg.3__2023__AT3G18240.1 1905 0.0
Ahg905805 jgi|Araly1|905805|Al_scaffold_0003_2933 163 3e-39
Ahg492738 jgi|Araly1|492738|fgenesh2_kg.7__2171__AT4G21450.1 63.9 3e-09
> Ahg479322 jgi|Araly1|479322|fgenesh2_kg.3__2023__AT3G18240.1
Length=1466
Score = 1905 bits (1031), Expect = 0.0
Identities = 1213/1298 (93%), Gaps = 23/1298 (2%)
Strand=Plus/Plus
Query 8 TCTCTGGTACACCATGAGAGGAGCTCTGTTCAGAAATGCATCTCTCTGCGCTCGCAGAAT 67
|||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTGATCCGCCATGAGAGGAGCTCTCTTCAGAAATGCATCTCTCTGCGCTCGCAGAAT 60
Query 68 CATTCTTTCT--TC---T-----A--GGATCTCCCCCAATGTTCCCTTTCTCACTCCAAT 115
|| ||||||| || | | ||||||||||||| ||||||||||| |||||||
Sbjct 61 CACTCTTTCTCCTCGTATAACCCATCAGATCTCCCCCAATCTTCCCTTTCTCGCTCCAAT 120
Query 116 CGCCGCTCCGGCTCCTCCCAAATTCAGA--TTT-T--TCAG-TTCCGA---ATCCGGTGA 166
|||| |||| ||||||| |||||||||| ||| | || | ||||| ||||||||
Sbjct 121 CGCCTCTCCAGCTCCTCTCAAATTCAGATTTTTCTCCTCCGAATCCGACTCGTCCGGTGA 180
Query 167 GAACTCGACTACTGCCACTGAGTCTTCGCCGACTGATTCATCCGATAAGAAGGATCTCGT 226
|||||||||||| || |||| |||||||||||||| || ||||||||||||||||||||
Sbjct 181 AAACTCGACTACTACCCCTGATTCTTCGCCGACTGAATCCTCCGATAAGAAGGATCTCGT 240
Query 227 TGTAGAGGATGTCAGCAACAAAGAGCTTAAAAGCCGTATAGACAAGTCTTTCAATGAGGG 286
|||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 241 TGTAGAAGATGTAAGCAACAAAGAGCTTAAAAGCCGTATAGAGAAGTATTTCAATGAGGG 300
Query 287 TAATGAAGATGCTTTACCTGGAGTTATTGAAGCACTTCTACAGAGAAGACTTG-TAGACA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 301 TAATGAAGATGCTTTACCTGGAGTTATTGAAGCACTTCTACAGAGAAGACTTGCT-GACA 359
Query 346 AACACGCAGAGACTGATGATGAATTGATGGAAAAAATCGAGAGTCTACCTTTCAAAGATG 405
|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 360 AACACGCAGAGACTGATGATGAATTGATTGAAAAAATCGAGACTTTACCTTTCAAAGATG 419
Query 406 ATGTCAAGGATGAAGATTTTGAATCCGATTTCGAAGAAGCGCATTCTACTGACGAAGAAC 465
||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 420 ATGTCAAGGATGAAGATTTTGAATCGGATTTCGAGGAAGCCCATTCTACTGACGAAGAGC 479
Query 466 TTGAGGATTTGTACAACTCTCCCGAGTATGTAGCTGAAAAGATGAGGAAGAAAGAATTTT 525
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 480 TTGAGGATTTGTACAACTCTCCCGAGTATGTAGCTGAAAAGATGAGGAAGAATGAATTTT 539
Query 526 TCAACATGGACGATAACAAGTGGGATCACATGATTAGAGAAGGTATCCAACATGGCTGTC 585
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 TCAACATGGACGATAAGAAGTGGGATCACATGATTAGAGAAGGCATCCAACATGGCTGTC 599
Query 586 TTACCGATACTAAACAATGCGAGGAGATTCTCGAGGATATGCTCAAATGGGACCAGCTTC 645
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TTACCGATACTAAGGAATGCGAGGAGATTCTTGAGGATATGCTCAAATGGGACCAGCTTC 659
Query 646 TTCCTGATGACTTGAAGAAAAAAGTTGAAGCAAAGTTTAATGAGCTCGGGGATATGTGTG 705
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 660 TTCCTGATGACTTGAAGAAAAAAGTTGAAGCAAAGTTTAATGAGCTTGGGGATATGTGTG 719
Query 706 AAAGAGGTGAAATTGAGGCCGAAGCAGCTTATGAGCTTTTCAAGGAATTTGAAGATGAGA 765
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 720 AAAGAGGTGAACTTGAGGCTGAAGCAGCTTATGAGCTTTTCAAGGAATTTGAAGATGAAA 779
Query 766 TGGTAATTCAGTATGGGGATCAGATGGAAGCTGAGGGTCCTCCCCAATTTGGTGAAACAG 825
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGTAATTCAGTATGGGGATCAAATGGAAGCTGAGGGTCCTCCCCAATTTGGTGAAACAG 839
Query 826 ATACTTCTGACAGGAATACTGACTTGGATGATCCCTCCGGTAAAGGCCCAATCCTCAGGT 885
|| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 ATGCTTCCGATAGGAATACTGACTTGGATGATCCCCCCGGTAAAGGCCCAATCCTCAGGT 899
Query 886 GGCAATCAAGGATAGTTTTTGCTCCTGGAGGTGATGCGTGGCATCCAAAGAACAGGAAAG 945
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGCAGTCAAGGATAGTTTTTGCTCCTGGAGGTGATGCGTGGCATCCAAAGAACAGGAAAG 959
Query 946 TTAAAATGTCTGTTACAGTGAAAGAGCTTGGGCTCTCAAATCATCAGGCTAAAAGGCTAA 1005
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 960 TGAAAATGTCTGTTACAGTGAAAGAGCTCGGGCTCTCAAAGCATCAGGCTAAAAGGCTAA 1019
Query 1006 GGGAACTTGTGGGAAAAAGATACCATTCAGGGAAAGATGAGCTTACAATCACCTGCGAGA 1065
||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||| |
Sbjct 1020 GGGAACTTGTGGGGAAAAGATACCATTCGGGGAAAGACGAGCTTACAATCACCAGCGAAA 1079
Query 1066 GGTTTGAACACCGAGAAGAAAACAGGAAAGACTGCTTGAGAACTCTTTACGGGTTGATAG 1125
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1080 GGTTTGAACACCGAGAGGAAAACAGGAAAGACTGCTTAAGAACTCTTTACGGGTTGATAG 1139
Query 1126 AGGAAGCTGGGAAAGCCAACAAGATCGCTGAAGACATAAGAACTTCATATGTAAAACAGA 1185
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1140 AGGAAGCTGGGAAAGCCAACAAGATCGCTGAGGACATAAGAACTTCATATGTAAAACAGA 1199
Query 1186 GACTCCGAGCCAGTCCAGCTTTTATGCAGAAACTACAAGCCAAGATCATAAGGTCTAAAG 1245
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GACTCCGAGCCAATCCAGCTTTTATGCAGAAACTACAAGCCAAGATCATAAGGTCTAAAG 1259
Query 1246 AATCAAATGCCATCAACGCTTGaaaaaaaCTTTTCCCG 1283
||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1260 AATCAGATGCCATCAACGCCTGAAAAAGACTTTTCCCG 1297
Score = 111 bits (60), Expect = 1e-23
Identities = 78/86 (91%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1360 TTTT-CAGATCGATGAAGA-ATCTTTGATGGTAACTCCTATTTTAGTTTGGTTTGCTTCT 1417
|||| | |||| ||||| | | ||||||||||||||||||||||||||||||||||| |
Sbjct 1290 TTTTCCCGATCCATGAA-ATTTTTTTGATGGTAACTCCTATTTTAGTTTGGTTTGCTTAT 1348
Query 1418 TGTATCTCATGAAGACATGAACCTTG 1443
||||||||||||||||||||||||||
Sbjct 1349 TGTATCTCATGAAGACATGAACCTTG 1374
> Ahg905805 jgi|Araly1|905805|Al_scaffold_0003_2933
Length=198
Score = 163 bits (88), Expect = 3e-39
Identities = 104/112 (93%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 1056 ACCTGCGAGAGGTTTGAACACCGAGAAGAAAACAGGAAAGACTGCTTGAGAACTCTTTAC 1115
||| ||||||||||||||||||||||||||||||||||||| || || | ||||||||||
Sbjct 49 ACCAGCGAGAGGTTTGAACACCGAGAAGAAAACAGGAAAGATTGGTTAACAACTCTTTAC 108
Query 1116 GGGTTGATAGAGGAAGCTGGGAAAGCCAACAAGATCGCTGAAGACATAAGAA 1167
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 109 GGGTTGATAGAGGAAGCTGGGAAAGCCAACAAGATCCCTGAGGACATGAGAA 160
> Ahg492738 jgi|Araly1|492738|fgenesh2_kg.7__2171__AT4G21450.1
Length=1259
Score = 63.9 bits (34), Expect = 3e-09
Identities = 87/109 (80%), Gaps = 18/109 (17%)
Strand=Plus/Plus
Query 1513 ATGCTAACTTCTAGATTCATAATGCAAT----G--T--TG--G-TAAAAATA---GACAA 1558
|||||||||||||||||||||||||||| | | || | |||||| | |||||
Sbjct 1127 ATGCTAACTTCTAGATTCATAATGCAATCTAAGGATCATGTTGGTAAAAAAAAAAGACAA 1186
Query 1559 TGAATGAAACTTTTTCATGTATAAAA-AATATGGAAACTTGGGGTTGAT 1606
|||| ||||||||| |||||| |||| || ||| ||||||||| |||||
Sbjct 1187 TGAA-GAAACTTTT-CATGTAAAAAAGAA-ATGTAAACTTGGGTTTGAT 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60334948080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5