BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21470.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946041 jgi|Araly1|946041|scaffold_702270.1 1941 0.0
> Ahg946041 jgi|Araly1|946041|scaffold_702270.1
Length=1186
Score = 1941 bits (1051), Expect = 0.0
Identities = 1128/1166 (97%), Gaps = 2/1166 (0%)
Strand=Plus/Plus
Query 178 TAATGTCGATGAGCAATTCCTTGAAAAAGCTCTCTTCTTGTGTTCTTATTGATCTCGATG 237
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 22 TAATGTCGATGAGCAATTCTTTGAAAAAGCTCACTTCTTGTGTTCTTATTGATCTCGATG 81
Query 238 GTACCTTAATCAACACAGATGGTGTTGTTGGTGACATTTTGAGGAAATACTTGTGTAAAT 297
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 82 GTACCTTAATCAACACAGATGGTGTTGTTGGTGACATTTTGAGGAAGTATTTGTGTAAAT 141
Query 298 ATGGTAAACAGTGGGATGGAAGAGAATCATTGAAAATAGTT-GGCAAAACTCCAGTAGAA 356
||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| |||||
Sbjct 142 ATGGTCAACAGTGGGATGGAAGAGAATCATTGAAGATAGTTGGGC-AAACTCCATTAGAA 200
Query 357 GCTGCTACTACTATTGTTGAAGATTATGAACTTCCTTGTAAAGTTGATGAATTCAATTCT 416
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 201 GCTGCTACTACCATTGTTGAAGATTATGGACTTCCTTGTAAAGTTGATGAATTCAATTCA 260
Query 417 GAATTCTACCCTTTGTTCTCTGCTCAGATGGACAAAATCAAATCTCTTCCTGGTGCCAAT 476
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 261 GAATTCTACCCTTTGTTCTCTGCTCAGATGGACAAAATCAAATCCCTTCCTGGTGCCAAT 320
Query 477 AGGTTGATTCGACATTTGAAGTGTCATGGAGTACCTGTGGCTTTGGCTTCCAATTCTTCA 536
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 321 CGTTTGATTCGGCATTTGAAGTGTCATGGAGTACCTGTGGCCTTGGCTTCCAATTCTTCA 380
Query 537 AGAGCAAATATTGAATCCAAAATTTCATATCATGAAGGGTGGAAGGAATGCTTCTCGGTT 596
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 381 AGAGCTAATATTGAATCCAAAATTTCACATCATGAAGGGTGGAAGGAATGCTTCTCGGTT 440
Query 597 ATTGTTGGTAGTGATGAAGTCTCTAAAGGAAAGCCTTCTCCTGATATTTTTCTCGAAGCA 656
||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 441 ATTGTCGGTAGTGATGAAGTTTCCAAAGGAAAGCCTTCTCCTGATATTTTTCTTGAAGCA 500
Query 657 GCGAAAAGATTGAAGAAAGATCCAGCTGACTGTTTGGTTATTGAAGATTCTGTGCCTGGT 716
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 501 GCGAAAAGATTGAATAAAGATCCAGCAGATTGTTTGGTTATTGAAGATTCTGTGCCTGGT 560
Query 717 GTTATGGCTGGTAAAGCTGCTGGGACAAAAGTGATTGCTGTTCCTTCTCTGCCTAAGCAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTTATGGCTGGTAAAGCTGCTGGGACAAAAGTGATTGCTGTTCCTTCTCTGCCTAAGCAA 620
Query 777 ACACATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGACTTGAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 621 ACACATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGGCCTGAA 680
Query 837 AAATGGGGACTTCCTCCATTCCAAGACTGGATAGAGAACACTTTACCAATTGATCCATGG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AAATGGGGACTTCCTCCATTCCAAGACTGGATAGAGAACACTTTACCAATTGATCCATGG 740
Query 897 CATATTGGAGGTCCAGTCATCAAAGGATTTGGCCGTGGCTCTAAAGTACTCGGAATCCCC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CATATTGGAGGTCCAGTCATCAAAGGATTTGGCCGTGGCTCTAAAGTACTCGGAATCCCC 800
Query 957 ACCGCTAACTTGTCAACAAAGGATTATGCGGATGAGCTAGTGGAACATCCTTCGGGAGTG 1016
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 801 ACAGCTAACTTGTCAACAAAGGATTATGCGGATGAGCTAGTTGAACATCCTTCGGGAGTG 860
Query 1017 TACTTTGGTTGGGCAGGCTTGGCAAAGAGAGGTGTCTTTAAAATGGTCATGAGCATTGGT 1076
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 861 TACTTTGGTTGGGCAGGCTTGGCAACGAGAGGTGTCTTTAAAATGGTCATGAGCATTGGT 920
Query 1077 TGGAATCCTTATTTCAATAACAAGGAGAAAACTATTGAACCATGGCTGCTTCACGATTTC 1136
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TGGAATCCTTATTTCAACAACAAGGAGAAAACTATTGAACCATGGCTGCTTCACGATTTC 980
Query 1137 ACTGAGGATTTCTACGGAGAAGAGCTACGTCTTATTATCGTTGGCTATATACGCCCTGAG 1196
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 981 ACTGAGGATTTCTACGGAGAAGAGCTACGTCTTATAATTGTTGGCTATATACGCCCTGAG 1040
Query 1197 GCTAATTTCTCTTCACTGGAGAGTCTCATTGCAAAGATTCACGAGGACAGGGAAGTTGCA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GCTAATTTCTCTTCACTGGAGAGTCTCATTGCAAAGATTCACGAGGACAGGGAAGTTGCA 1100
Query 1257 GAGAAAGCTCTTGATCTTCCTTCGTATGCTAAGTTTAAGGGTGATCCTTATCTGACTAAA 1316
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GAGAAAGCTCTTGATCTTCCATCGTATGCTAAGTTTAAGGGTGATCCTTATCTGACTAAA 1160
Query 1317 TGATAGAAGCTTTTATGAAAAGAATT 1342
||||||||| |||||| ||||||||
Sbjct 1161 GGATAGAAGCATTTATGTAAAGAATT 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5