BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21480.1
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354635 jgi|Araly1|354635|fgenesh1_pg.C_scaffold_7001808 2477 0.0
> Ahg354635 jgi|Araly1|354635|fgenesh1_pg.C_scaffold_7001808
Length=1503
Score = 2477 bits (1341), Expect = 0.0
Identities = 1450/1502 (97%), Gaps = 9/1502 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTCAGTCGGAATTGTCATCGGAGATGGCAAAAAAGAATATCCTGGTAAACTCACT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTTCAGTCGGAATTGTCGTCGGAGATGGCAAAAAAGAATATCCTGGTAAACTCACT 60
Query 61 CTTTACGTCACCGTGACATGTATTGTCGCCGCCATGGGTGGTCTCATCTTCGGTTACGAC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTACGTCACCGTGACATGTATCGTCGCCGCCATGGGTGGTCTCATCTTCGGTTACGAC 120
Query 121 ATCGGTATCTCCGGTGGAGTGACGACAATGGATTCGTTTCAGCAAAAGTTCTTCCCGTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCGGTATCTCCGGTGGAGTGACGACAATGGATTCGTTTCAGCAAAAGTTCTTCCCGTCG 180
Query 181 GTTTACGAGAAACAGAAGAAGGATCATG-ATTCAAACCAATACTGCAGATTTGACAGCGT 239
|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 181 GTTTACGAGAAACAGAAGAAGGATCACGTAT-CAAACCAATACTGCAGATTTGACAGCGT 239
Query 240 Ttctctcactctcttcacttcctctctttacctcgccgcactctgctcctccctcgttgc 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 TTCTCTCACTCTCTTCACTTCCTCTCTTTACCTCGCCGCACTCTGCTCCTCCATCGTTGC 299
Query 300 ctcttACGTTACCCGTCAGTTTGGCCGGAAAATTTCGATGCTTCTCGGTGGAGTTCTCTT 359
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 CTCTTACGTTACCCGTAAGTTTGGCCGGAAAATTTCGATGCTTCTCGGCGGAGTTCTCTT 359
Query 360 CTGCGCCGGAGCTCTTCTTAACGGTTTCGCAACTGCCGTTTGGATGCTCATCGTTGGTCG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTGCGCCGGAGCTCTTCTTAACGGTTTCGCAACTGCCGTTTGGATGCTCATCGTTGGTCG 419
Query 420 TTTGTTACTCGGTTTCGGTATCGGCTTCACCAATCAGTCTGTGCCGTTGTATCTCTCGGA 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTGTTACTCGGTTTTGGTATCGGCTTCACCAATCAGTCTGTGCCGTTGTATCTCTCGGA 479
Query 480 GATGGCACCGTATAAATACAGAGGAGCATTGAACATCGGATTCCAGCTCTCAATCACCAT 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATGGCACCGTATAAATTCAGAGGAGCATTGAACATCGGATTCCAGCTCTCAATCACCAT 539
Query 540 TGGTATCCTTGTCGCCAACGTTTTGAACTTCTTCTTCTCCAAAATCAGT---TGGGGTTG 596
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGGTATCCTTATCGCCAACGTTTTGAACTTCTTCTTCTCCAAAATCAGCAGATGGGGTTG 599
Query 597 GAGACTCAGTCTCGGCGGCGCCGTCGTTCCGGCACTCATCATCACCGTCGGTTCTCTTAT 656
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 600 GAGACTCAGTCTCGGCGGCGCCGTCGTCCCGGCACTCATCATCACCGTTGGTTCTCTTAT 659
Query 657 CCTCCCGGACACACCAAACTCCATGATCGAGAGAGGTCAATTTAGGCTAGCGGAAGCGAA 716
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 660 CCTCCCGGACACACCAAACTCCATGATCGAGAGAGGTCAATTTAAGCTAGCGGAAACGAA 719
Query 717 ACTCCGTAAGATTCGTGGCGTCGACGACATTGATGACGAGATCAACGATTTGATCATCGC 776
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 720 ACTCCGTAAGATTCGTGGCGTCGACGACGTTGATGACGAGATCAACGATTTGATCGTCGC 779
Query 777 CAGTGAAGCTTCGAAGCTCGTTGAGCATCCATGGAGGAATCTGTTGCAGAGGAAGTATAG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAGTGAAGCTTCGAAGCTCGTTGAGCATCCATGGAGGAATCTGTTGCAGAGGAAGTATAG 839
Query 837 ACCACATCTAACGATGGCGATTCTGATTCCGGCATTTCAGCAGCTTACCGGAATCAATGT 896
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 840 ACCACATCTAACGATGGCGATTCTGATTCCGGCGTTTCAGCAGCTCACCGGAATCAATGT 899
Query 897 TATAATGTTCTACGCGCCGGTTCTGTTTCAAACGATTGGATTTGGTAGCGACGCGGCTCT 956
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 900 TATAATGTTCTACGCGCCGGTTCTGTTTCAAACGATTGGATTCGGTAGCGACGCCGCTCT 959
Query 957 GATTTCGGCGGTTGTGACCGGTTTGGTTAACGTTGGAGCCACCGTGGTGTCAATCTATGG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATTTCGGCGGTTGTGACCGGTTTGGTTAACGTTGGAGCCACCGTGGTGTCAATCTATGG 1019
Query 1017 CGTTGATAAATGGGGAAGACGATTTCTATTCCTTGAAGGAGGATTCCAAATGCTAATTTC 1076
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1020 CGTTGATAAATGGGGAAGACGATTTCTCTTCCTTGAAGGAGGATTCCAAATGCTAATATC 1079
Query 1077 TCAGGTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGTGTCGATGGAA-CCCCAGGCG 1135
||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||
Sbjct 1080 TCAGGTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGCGTCGATGGAAACCCC-GGCG 1138
Query 1136 TTTTACCAAAATGGTACGCCATTGTTGTGGTTTTGTTCATATGCATCTACGTGGCGGCGT 1195
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1139 TTTTACCAAAATGGTACGCCATTGTTGTAGTTTTGTTCATATGCATCTACGTGGCGGCCT 1198
Query 1196 TTGCTTGGTCGTGGGGTCCACTAGGATGGTTAGTGCCATCGGAGATTTTTCCGTTGGAAA 1255
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1199 TTGCTTGGTCGTGGGGTCCACTTGGATGGTTAGTGCCATCGGAGATTTTCCCGTTGGAAA 1258
Query 1256 TCCGATCAGCGGCTCAGAGCATAACGGTGTCGGTGAACATGATCTTCACGTTCTTGATTG 1315
||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1259 TCCGATCGGCGGCTCAGAGCATAACGGTGTCGATGAACATGATCTTCACGTTCCTGATTG 1318
Query 1316 CACAAGTGTTTTTGATGATGCTTTGCCACTTGAAGTTCGGGTTGTTCATATTCTTCGCGT 1375
| || |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1319 CTCAGGTGTTTCTGATGATGCTCTGCCACTTGAAGTTCGGATTGTTCATATTCTTCGCGT 1378
Query 1376 TTTTCGTGGTGGTGATGTCGATTTTCGTCTATCTTTT-CTTACCGGAGACAAGAGGAGTG 1434
||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1379 TTTTCATGGTGGTGATGTCGATTTTCGTCTA-CTTTTTCTTACCGGAGACAAGAGGAGTA 1437
Query 1435 CCGATCGAGGAGATGAATCGGGTCTGGAGATCACATTGGTATTGGTCGAAGTTCGTTGAC 1494
||||| ||||||||||| | |||||||||||| |||||||||||||| |||||||||| |
Sbjct 1438 CCGATTGAGGAGATGAAGCAGGTCTGGAGATCGCATTGGTATTGGTCAAAGTTCGTTGCC 1497
Query 1495 GC 1496
||
Sbjct 1498 GC 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57135367500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5