BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21490.1 Length=1743 Score E Sequences producing significant alignments: (Bits) Value Ahg492734 jgi|Araly1|492734|fgenesh2_kg.7__2167__AT4G21490.1 2645 0.0 Ahg943283 jgi|Araly1|943283|scaffold_603827.1 1777 0.0 > Ahg492734 jgi|Araly1|492734|fgenesh2_kg.7__2167__AT4G21490.1 Length=1650 Score = 2645 bits (1432), Expect = 0.0 Identities = 1581/1654 (96%), Gaps = 5/1654 (0%) Strand=Plus/Plus Query 91 GGTGGGGGACTTATAGTTTACTCTGAGGCAAATCCATCATATAGCAACAATGGTGTTGAA 150 ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 GGTGGAGGACTTATAGTCTACTCTGAGGCAAATGCATCATATAGCAACAATGGTGTTGAA 60 Query 151 ACTAAAACCAGGAAGAGAAAAGTAGTGCTGCTCGGAACTGGATGGGCTGGAGCAAGTTTT 210 ||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 61 ACTGAAACCAGAAAGAAAAAAGTAGTGTTGCTCGGAACTGGATGGGCTGGAGCAAGTTTC 120 Query 211 TTGAAGACTTTGAATAACTCTTCTTATGAGGTTCAGGTTATATCTCCTCGAAACTACTTT 270 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 TTGAAGACTCTGAATAACTCTTCTTATGAGGTTCAGGTTATATCGCCTCGAAACTACTTT 180 Query 271 GCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGCAGCGTTGTT 330 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 181 GCTTTCACTCCCTTGTTACCTAGTGTTACTTGCGGAACTGTTGAAGCTCGCAGTGTTGTT 240 Query 331 GAACCTATTCGCAACATTGCAAGAAAGCAGAATGTTGAGATGTCTTTCTTGGAGGCAGAA 390 |||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||| Sbjct 241 GAACCTATCCGCAACATTGGAAG-AA--AGAATGTTGAGATGTCTTTCTTGGAGGCAGAA 297 Query 391 TGT-TTCAAAATTGATCCAGGAAGCAAGAAAGTTTACTGCCGATCAAAACAAGGCGTGAA 449 ||| || ||||||||||| ||||||||||||||||||| ||||| |||||||||||||| Sbjct 298 TGTGTT-AAAATTGATCCTCGAAGCAAGAAAGTTTACTGTCGATCCAAACAAGGCGTGAA 356 Query 450 TTCGAAAGGGAAGAAAGAGTTTGATGTTGACTATGACTACCTTGTAATCGCTACTGGAGC 509 |||||| ||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 357 TTCGAACGGGAAGAGAGAATTTGATGTTGACTATGATTACCTTGTAATTGCTACTGGAGC 416 Query 510 TCAGTCTAACACATTTAACATTCCTGGCGTGGAGGAGAACTGTCATTTCCTCAAAGAGGT 569 |||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 417 TCAGTCAAACACATTTAATATTCCAGGGGTGGAGGAGAACTGTCATTTCCTCAAAGAGGT 476 Query 570 TGAAGATGCACAGAGAATTCGTAGTACTGTCATTGATTCATTTGAGAAGGCAAGTTTACC 629 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 477 TGAAGATGCACAGAGAATCCGTAGCACTGTCATTGATTCATTTGAGAAGGCAAGTTTACC 536 Query 630 TGGACTAAACGAACAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTTGGTGGTGGACC 689 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GGGACTAAACGAAGAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTTGGTGGTGGACC 596 Query 690 AACAGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAACGAGGATCTAGTCAAACT 749 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 597 AACCGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAACGAGGATTTAGTCAAACT 656 Query 750 ATATCCTAAAGCCAAAAACTTAGTGCAGATCACTCTTCTAGAGGCTGCAGACCACATCTT 809 ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct 657 CTATCCCAAAGCCAAGAACTTAGTGCAGATCACTCTGCTAGAGGCTGCAGACCACATCCT 716 Query 810 GACCATGTTTGACAAGAGAATCACAGAGTTTGCTGAAGAAAAATTTACTAGAGATGGTAT 869 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 717 GACCATGTTTGACAAGAGAATCACTGAGTTTGCTGAAGAAAAGTTTACTAGAGATGGTAT 776 Query 870 TGATGTGAAATTAGGTTCTATGGTGGTCAAAGTGAATGATAAGGAAATTTCTGCAAAAAC 929 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 777 TGATGTGAAATTGGGTTCTATGGTGGTCAAAGTGAATGATAAGGAAATTTCTGCTAAAAC 836 Query 930 CAAAGCAGGAGAGGTCTCAACTATTCCTTATGGAATGATTGTTTGGTCAACTGGTATTGG 989 ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 837 CAAAGGAGGAGAGGTCTCTACTATTCCTTATGGAATGATCGTTTGGTCAACTGGTATTGG 896 Query 990 GACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCAGGGCAATAGACGTGCTTT 1049 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 897 GACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCAGGGAAATAGACGTGCTTT 956 Query 1050 AGCAACCGATGAATGGCTTCGTGTTGAAGGATGTGATAATATATATGCACTTGGTGATTG 1109 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 957 AGCTACCGATGAATGGCTTCGTGTTGAAGGATGTGATAACATATATGCACTTGGTGATTG 1016 Query 1110 TGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGCTATATTCAAGAAAGCAGA 1169 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGCTATATTCAAGAAAGCAGA 1076 Query 1170 TAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCATGAAGTAATGAGTGACATATG 1229 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1077 TAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCAAGAAGTAATGGGTGACATATG 1136 Query 1230 TGATAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAAGGTATGCATGGCATTACCGA 1289 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1137 TGATAGATACCCTCAAGTGCAACTCTACTTGAAGAGTAAAGGTATGCATGGCATTACCGA 1196 Query 1290 TCTTCTAAAACAAGCACAAGCTGAGAATGGTTCCAACAAGTCTGTCGAACTCGATATAGA 1349 |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1197 TCTTCTAAAAGAAGCACAAGCTGAGAATGGTTCCAATAAGTCCGTCGAACTCGATATAGA 1256 Query 1350 AGAACTTAAATCAGCTCTTTGTCAAGTTGACTCACAAGTGAAGCTTCTACCAGCGACAGG 1409 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1257 AGAACTTAAATCAGCTCTTTGTCAAGTTGACTCACAAGTGAAGCTTCTTCCAGCTACAGG 1316 Query 1410 ACAGGTCGCTGCTCAACAAGGGACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTATG 1469 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1317 ACAGGTCGCTGCTCAGCAAGGTACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTATG 1376 Query 1470 CGAGAAGAATCCTGAAGGTCCCATTAGGATTAGAGGAGAAGGTCGTCACCGCTTCCGTCC 1529 |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 1377 CGAGAAGAATCCTGAAGGTCCCATTAGGATTAGAGGAGAAGGCCGTCATCGTTTCCGTCC 1436 Query 1530 CTTCAGGTATAGACATTTGGGACAATTTGCTCCATTAGGAGGCGAACAAACCGCGGCGCA 1589 |||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 1437 CTTCAGGTATCGACATTTGGGACAGTTTGCTCCATTAGGAGGGGAACAAACTGCGGCGCA 1496 Query 1590 ACTTCCAGGAGACTGGGTTTCGATAGGACACAGCAGTCAATGGCTGTGGTACTCCGTTTA 1649 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1497 ACTTCCAGGAGACTGGGTTTCGATAGGACACAGTAGTCAATGGCTGTGGTACTCCGTTTA 1556 Query 1650 CGCTAGTAAGCAAGTGAGCTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACG 1709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 CGCTAGTAAGCAAGTGAGCTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACG 1616 Query 1710 ATTCATCTTCGGGAGGGATTCAAGTCGCATTTGA 1743 |||||||||||||||||||||||||||||||||| Sbjct 1617 ATTCATCTTCGGGAGGGATTCAAGTCGCATTTGA 1650 > Ahg943283 jgi|Araly1|943283|scaffold_603827.1 Length=1793 Score = 1777 bits (962), Expect = 0.0 Identities = 1500/1756 (85%), Gaps = 51/1756 (3%) Strand=Plus/Plus Query 18 CTTCGAAAGATTATCCCAAGCTTTCCATGATTATCCTTCTCTCTCCAAAATTCTCGTCGT 77 |||||| ||||| || ||||||| || ||| ||||||||||| ||| ||||||||||| Sbjct 39 CTTCGAGAGATTCTCTAAAGCTTTTCAAGATCATCCTTCTCTCACCAGGATTCTCGTCGT 98 Query 78 CTCCACCATCAGTGGTGGGGGACTTATAGTTTACTCTGAGGCAAATC-CATCATAT--AG 134 |||||| ||||||||||| |||||||||| ||| ||||||||||| | |||| ||| || Sbjct 99 CTCCACGATCAGTGGTGGTGGACTTATAGCTTATTCTGAGGCAAA-CGCATCCTATGGAG 157 Query 135 C-AAC---AATGG---TGTTGAAACTAAAACCAGGAAG-AGAAAAGTAGTGCTGCTCGGA 186 | ||| ||| |||||||||| ||||| |||| || || || ||| |||||||| Sbjct 158 CGAACGGTGCTGGTATTGTTGAAACTGGAACCAAGAAGAAG-AAGGTGGTGTTGCTCGGA 216 Query 187 ACTGGATGGGCTGGAGCAAGTTTTTTGAAGACTTTGAATAACTCTTC-TTATGAGGTTCA 245 ||||||||||||||| | ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 217 ACTGGATGGGCTGGAACTAGTTTCTTGAAGAATTTGAATAATTC-TCAATATGAGGTTCA 275 Query 246 GGTTATATCTCCTCGAAACTACTTTGCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGG 305 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 GATTATATCACCTCGAAACTACTTTGCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGG 335 Query 306 AACTGTTGAAGCTCGCAGCGTTGTTGAACCTATTCGCAACATTGCAAGAAAGCAGAATGT 365 ||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||||| Sbjct 336 AACTGTTGAAGCTCGCAGCGTTGTTGAGCCTATTCGAAACATTGGAAGAAAGAAGAATGT 395 Query 366 TGAGA-TGTCTTTCTTGGAGGCAGAATGTTTCAAAATTGATCCAGGAAGCAAGAAAGTTT 424 ||| | | |||| | |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 396 TGATACT-TCTTACCTGGAGGCAGAATGTTTCAAAATTGATCCAGCAAGCAAGAAAGTTT 454 Query 425 ACTGCCGATCAAAACAAGGCGTGAATTCGAAAGGGAAGAAAG-AGTTTGATGTTGACTAT 483 |||||||||| ||||||||| | | ||| ||| |||| |||| | ||| |||||||||| Sbjct 455 ACTGCCGATCCAAACAAGGCCTTAGTTC-AAATGGAAAAAAGGAATTTTCTGTTGACTAT 513 Query 484 GACTACCTTGTAATCGCTACTGGAGCTCAGTCTAACACATTTAACATTCCTGGCGTGGAG 543 ||||| |||||||| || |||||||||||||||||||| |||||||| || || |||||| Sbjct 514 GACTATCTTGTAATTGCAACTGGAGCTCAGTCTAACACCTTTAACATACCCGGAGTGGAG 573 Query 544 GAGAACTGTCATTTCCTCAAAGAGGTTGAAGATGCACAGAGAATTCGTAGTACTGTCATT 603 || ||||||||||| || ||||||||||||||||| |||||||| |||| ||||| ||| Sbjct 574 GAAAACTGTCATTTTCTGAAAGAGGTTGAAGATGCTCAGAGAATCCGTAAAACTGTGATT 633 Query 604 GATTCATTTGAGAAGGCAAGTTTACCTGGACTAAACGAACAAGAGAGAAAGAGAATGCTA 663 ||||| ||||||||||||||| |||| | ||||| ||| ||||| |||||||||| || Sbjct 634 GATTCCTTTGAGAAGGCAAGTCTACCAGAACTAAGCGATGAAGAGCGAAAGAGAATCCTG 693 Query 664 CATTTTGTAGTTGTTGGTGGTGGACCAACAGGTGTTGAGTTTGCTTCTGAGCTTCATGAT 723 |||||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||| Sbjct 694 CATTTTGTGGTTGTTGGTGGTGGGCCAACAGGTGTTGAGTTTGCCGCTGAGCTGCATGAT 753 Query 724 TTTGTTAAC-GAGGATCTAGTCAAACTATATCCTAAAGCCAAAAACTT-AGTGCAGA-TC 780 ||||||| | ||||||||||||| || ||||||| |||||| || ||| | || || Sbjct 754 TTTGTTA-CTGAGGATCTAGTCAGTCTTTATCCTAGAGCCAAGGG-TTCAGTAC-GAATC 810 Query 781 ACTCTTCTAGAGGCTGCAGACCACATCTTGACCATGTTTGACAAGAGAATCACAGAGTTT 840 || ||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 811 ACACTTCTCGAGGCCGCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTT 870 Query 841 GCTGAAGAAAAATTTA-CTAGAGATGGTATTGATGTGAAA-TTAGGTTCTATGGTGG-TC 897 || |||||||| |||| | |||||||| |||||||||||| || || |||||||| | Sbjct 871 GCCGAAGAAAAGTTTAGC-AGAGATGGAATTGATGTGAAACTT-GGCTCTATGGTAACT- 927 Query 898 AAAGTGAATGATAAGGAAATTTCTGCAAAAACCAAAGCAGGAGAGGTCTCAACTATTCCT 957 ||||||||||| || || || ||||| ||||| |||| ||||||||| || |||||||| Sbjct 928 AAAGTGAATGAGAAAGATATATCTGCTAAAACGAAAGGAGGAGAGGTTTCCTCTATTCCT 987 Query 958 TATGGAATGATTGTTTGGTCAACTGGTATTGGGACTCGTCCTGTGATCAAAGATTTTATG 1017 |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 988 TATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATG 1047 Query 1018 AAACAAATTGGTCAGGGCAATAGACGTGCTTTAGCAACCGATGAATGGCTTCGTGTTGAA 1077 ||||||||||||||||| |||||||||||| | ||||| |||||||||||||| || ||| Sbjct 1048 AAACAAATTGGTCAGGGTAATAGACGTGCTCTGGCAACTGATGAATGGCTTCGCGTAGAA 1107 Query 1078 GGATGTGATAATATATATGCACTTGGTGATTGTGCAACAATCAACCAGAGAAAAGTCATG 1137 ||| ||||||||||||||| ||||||||||||||||| || |||||| | ||||||||| Sbjct 1108 GGAACTGATAATATATATGCCCTTGGTGATTGTGCAACCATTAACCAGCGCAAAGTCATG 1167 Query 1138 GAAGACATAGCTGCTATATTCAAG-AAAGCAGATAAGGAAAATTCAGGAACACTGACAAT 1196 ||||| | ||||||| || | | |||||||| || || || || || |||||||| | Sbjct 1168 GAAGATGTTTCTGCTATTTTTA-GCAAAGCAGACAAAGACAAGTCTGGGACACTGACTCT 1226 Query 1197 GAAAGAATTTCATGAAGTAATG-AGTGACATATGTGATAGATACCCTCAAGTGGAGCTCT 1255 ||||| || || |||| |||| | |||||| |||| ||||||||||||||| ||||||| Sbjct 1227 CAAAGAGTTCCAAGAAGCAATGGA-TGACATTTGTGTTAGATACCCTCAAGTTGAGCTCT 1285 Query 1256 ACTTGAAGAGTAAAGGTATGCATGGCATTACCGATCTTCTAAAACAAGCAC-AAGCTGA- 1313 |||||||||||||| |||||| ||||||| | |||||||| ||| |||| | || |||| Sbjct 1286 ACTTGAAGAGTAAACGTATGCGTGGCATTGCAGATCTTCTTAAAGAAGC-CGAAACTGAT 1344 Query 1314 GAATGGT-TCCAACAAGT-CTGTCGAACTCGAT-ATAGAAGAACTT-AAATCAGCTCTTT 1369 || || | ||||| ||| | ||||||| || || |||||| || ||||||||||||| Sbjct 1345 GA-TG-TATCCAAGAAGAACA-TCGAACT-GAAGATCGAAGAA-TTCAAATCAGCTCTTT 1399 Query 1370 GTCAAGTTGACTCACAAGTGAAGCTTCTACCAGCGACAGGACAGGTCGCTGCTCAACAAG 1429 ||| |||||||||||||||||| |||| ||||| |||| |||||| ||||| || |||| Sbjct 1400 CTCAGGTTGACTCACAAGTGAAGTTTCTTCCAGCTACAGCACAGGTTGCTGCGCAGCAAG 1459 Query 1430 G-GACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTAT-GCGAGAAGAATCCTGAAGG 1487 | | ||||||| || |||||||||||||| ||||||| || ||||||||||||| ||||| Sbjct 1460 GTG-CTTACCTAGCTAAATGCTTTGATCGCATGGAAG-ATTGCGAGAAGAATCCAGAAGG 1517 Query 1488 TCCCATTAGGATTAGAGGAGAAGGTCGTCACCGCTTCCGTCCCTTCAGGTATAGACATTT 1547 |||||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 1518 TCCCATTAGGATGAGAGGAGAAGGTCGTCATCGTTTCCGCCCCTTCAGGTACAGACATTT 1577 Query 1548 GGGACAATTTGCTCCATTAGGAGGCGAACAAACCGCGGCGCAACTTCCAGGAGACTGGGT 1607 |||||||||||| ||| | ||||| || ||||| || || |||||||||||||| ||||| Sbjct 1578 GGGACAATTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGT 1637 Query 1608 TTCGATAGGACACAGCAGTCAATGGCTGTGGTACTCCGTTTACGCTAGTAAGCAAGTGAG 1667 ||| || ||||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| Sbjct 1638 TTCTATTGGACAAAGCAGCCAGTGGCTCTGGTATTCCGTCTACGCCAGTAAGCAAGTGAG 1697 Query 1668 CTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACGATTCATCTTCGGGAGGGA 1727 |||||| |||||||| || ||||| ||||| |||||||| || |||||||| || ||||| Sbjct 1698 CTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTCATCTTTGGTAGGGA 1757 Query 1728 TTCAAGTCGCATTTGA 1743 ||| ||| |||| ||| Sbjct 1758 TTCCAGTAGCATCTGA 1773 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65400950665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5