BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21490.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492734 jgi|Araly1|492734|fgenesh2_kg.7__2167__AT4G21490.1 2645 0.0
Ahg943283 jgi|Araly1|943283|scaffold_603827.1 1777 0.0
> Ahg492734 jgi|Araly1|492734|fgenesh2_kg.7__2167__AT4G21490.1
Length=1650
Score = 2645 bits (1432), Expect = 0.0
Identities = 1581/1654 (96%), Gaps = 5/1654 (0%)
Strand=Plus/Plus
Query 91 GGTGGGGGACTTATAGTTTACTCTGAGGCAAATCCATCATATAGCAACAATGGTGTTGAA 150
||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GGTGGAGGACTTATAGTCTACTCTGAGGCAAATGCATCATATAGCAACAATGGTGTTGAA 60
Query 151 ACTAAAACCAGGAAGAGAAAAGTAGTGCTGCTCGGAACTGGATGGGCTGGAGCAAGTTTT 210
||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 ACTGAAACCAGAAAGAAAAAAGTAGTGTTGCTCGGAACTGGATGGGCTGGAGCAAGTTTC 120
Query 211 TTGAAGACTTTGAATAACTCTTCTTATGAGGTTCAGGTTATATCTCCTCGAAACTACTTT 270
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTGAAGACTCTGAATAACTCTTCTTATGAGGTTCAGGTTATATCGCCTCGAAACTACTTT 180
Query 271 GCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGCAGCGTTGTT 330
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 181 GCTTTCACTCCCTTGTTACCTAGTGTTACTTGCGGAACTGTTGAAGCTCGCAGTGTTGTT 240
Query 331 GAACCTATTCGCAACATTGCAAGAAAGCAGAATGTTGAGATGTCTTTCTTGGAGGCAGAA 390
|||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 241 GAACCTATCCGCAACATTGGAAG-AA--AGAATGTTGAGATGTCTTTCTTGGAGGCAGAA 297
Query 391 TGT-TTCAAAATTGATCCAGGAAGCAAGAAAGTTTACTGCCGATCAAAACAAGGCGTGAA 449
||| || ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 298 TGTGTT-AAAATTGATCCTCGAAGCAAGAAAGTTTACTGTCGATCCAAACAAGGCGTGAA 356
Query 450 TTCGAAAGGGAAGAAAGAGTTTGATGTTGACTATGACTACCTTGTAATCGCTACTGGAGC 509
|||||| ||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 357 TTCGAACGGGAAGAGAGAATTTGATGTTGACTATGATTACCTTGTAATTGCTACTGGAGC 416
Query 510 TCAGTCTAACACATTTAACATTCCTGGCGTGGAGGAGAACTGTCATTTCCTCAAAGAGGT 569
|||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 417 TCAGTCAAACACATTTAATATTCCAGGGGTGGAGGAGAACTGTCATTTCCTCAAAGAGGT 476
Query 570 TGAAGATGCACAGAGAATTCGTAGTACTGTCATTGATTCATTTGAGAAGGCAAGTTTACC 629
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 477 TGAAGATGCACAGAGAATCCGTAGCACTGTCATTGATTCATTTGAGAAGGCAAGTTTACC 536
Query 630 TGGACTAAACGAACAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTTGGTGGTGGACC 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGGACTAAACGAAGAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTTGGTGGTGGACC 596
Query 690 AACAGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAACGAGGATCTAGTCAAACT 749
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 AACCGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAACGAGGATTTAGTCAAACT 656
Query 750 ATATCCTAAAGCCAAAAACTTAGTGCAGATCACTCTTCTAGAGGCTGCAGACCACATCTT 809
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 657 CTATCCCAAAGCCAAGAACTTAGTGCAGATCACTCTGCTAGAGGCTGCAGACCACATCCT 716
Query 810 GACCATGTTTGACAAGAGAATCACAGAGTTTGCTGAAGAAAAATTTACTAGAGATGGTAT 869
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 717 GACCATGTTTGACAAGAGAATCACTGAGTTTGCTGAAGAAAAGTTTACTAGAGATGGTAT 776
Query 870 TGATGTGAAATTAGGTTCTATGGTGGTCAAAGTGAATGATAAGGAAATTTCTGCAAAAAC 929
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 777 TGATGTGAAATTGGGTTCTATGGTGGTCAAAGTGAATGATAAGGAAATTTCTGCTAAAAC 836
Query 930 CAAAGCAGGAGAGGTCTCAACTATTCCTTATGGAATGATTGTTTGGTCAACTGGTATTGG 989
||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 CAAAGGAGGAGAGGTCTCTACTATTCCTTATGGAATGATCGTTTGGTCAACTGGTATTGG 896
Query 990 GACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCAGGGCAATAGACGTGCTTT 1049
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 897 GACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCAGGGAAATAGACGTGCTTT 956
Query 1050 AGCAACCGATGAATGGCTTCGTGTTGAAGGATGTGATAATATATATGCACTTGGTGATTG 1109
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 AGCTACCGATGAATGGCTTCGTGTTGAAGGATGTGATAACATATATGCACTTGGTGATTG 1016
Query 1110 TGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGCTATATTCAAGAAAGCAGA 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGCTATATTCAAGAAAGCAGA 1076
Query 1170 TAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCATGAAGTAATGAGTGACATATG 1229
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1077 TAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCAAGAAGTAATGGGTGACATATG 1136
Query 1230 TGATAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAAGGTATGCATGGCATTACCGA 1289
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGATAGATACCCTCAAGTGCAACTCTACTTGAAGAGTAAAGGTATGCATGGCATTACCGA 1196
Query 1290 TCTTCTAAAACAAGCACAAGCTGAGAATGGTTCCAACAAGTCTGTCGAACTCGATATAGA 1349
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1197 TCTTCTAAAAGAAGCACAAGCTGAGAATGGTTCCAATAAGTCCGTCGAACTCGATATAGA 1256
Query 1350 AGAACTTAAATCAGCTCTTTGTCAAGTTGACTCACAAGTGAAGCTTCTACCAGCGACAGG 1409
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1257 AGAACTTAAATCAGCTCTTTGTCAAGTTGACTCACAAGTGAAGCTTCTTCCAGCTACAGG 1316
Query 1410 ACAGGTCGCTGCTCAACAAGGGACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTATG 1469
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ACAGGTCGCTGCTCAGCAAGGTACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTATG 1376
Query 1470 CGAGAAGAATCCTGAAGGTCCCATTAGGATTAGAGGAGAAGGTCGTCACCGCTTCCGTCC 1529
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1377 CGAGAAGAATCCTGAAGGTCCCATTAGGATTAGAGGAGAAGGCCGTCATCGTTTCCGTCC 1436
Query 1530 CTTCAGGTATAGACATTTGGGACAATTTGCTCCATTAGGAGGCGAACAAACCGCGGCGCA 1589
|||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1437 CTTCAGGTATCGACATTTGGGACAGTTTGCTCCATTAGGAGGGGAACAAACTGCGGCGCA 1496
Query 1590 ACTTCCAGGAGACTGGGTTTCGATAGGACACAGCAGTCAATGGCTGTGGTACTCCGTTTA 1649
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1497 ACTTCCAGGAGACTGGGTTTCGATAGGACACAGTAGTCAATGGCTGTGGTACTCCGTTTA 1556
Query 1650 CGCTAGTAAGCAAGTGAGCTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACG 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CGCTAGTAAGCAAGTGAGCTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACG 1616
Query 1710 ATTCATCTTCGGGAGGGATTCAAGTCGCATTTGA 1743
||||||||||||||||||||||||||||||||||
Sbjct 1617 ATTCATCTTCGGGAGGGATTCAAGTCGCATTTGA 1650
> Ahg943283 jgi|Araly1|943283|scaffold_603827.1
Length=1793
Score = 1777 bits (962), Expect = 0.0
Identities = 1500/1756 (85%), Gaps = 51/1756 (3%)
Strand=Plus/Plus
Query 18 CTTCGAAAGATTATCCCAAGCTTTCCATGATTATCCTTCTCTCTCCAAAATTCTCGTCGT 77
|||||| ||||| || ||||||| || ||| ||||||||||| ||| |||||||||||
Sbjct 39 CTTCGAGAGATTCTCTAAAGCTTTTCAAGATCATCCTTCTCTCACCAGGATTCTCGTCGT 98
Query 78 CTCCACCATCAGTGGTGGGGGACTTATAGTTTACTCTGAGGCAAATC-CATCATAT--AG 134
|||||| ||||||||||| |||||||||| ||| ||||||||||| | |||| ||| ||
Sbjct 99 CTCCACGATCAGTGGTGGTGGACTTATAGCTTATTCTGAGGCAAA-CGCATCCTATGGAG 157
Query 135 C-AAC---AATGG---TGTTGAAACTAAAACCAGGAAG-AGAAAAGTAGTGCTGCTCGGA 186
| ||| ||| |||||||||| ||||| |||| || || || ||| ||||||||
Sbjct 158 CGAACGGTGCTGGTATTGTTGAAACTGGAACCAAGAAGAAG-AAGGTGGTGTTGCTCGGA 216
Query 187 ACTGGATGGGCTGGAGCAAGTTTTTTGAAGACTTTGAATAACTCTTC-TTATGAGGTTCA 245
||||||||||||||| | ||||| ||||||| ||||||||| || || |||||||||||
Sbjct 217 ACTGGATGGGCTGGAACTAGTTTCTTGAAGAATTTGAATAATTC-TCAATATGAGGTTCA 275
Query 246 GGTTATATCTCCTCGAAACTACTTTGCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGG 305
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GATTATATCACCTCGAAACTACTTTGCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGG 335
Query 306 AACTGTTGAAGCTCGCAGCGTTGTTGAACCTATTCGCAACATTGCAAGAAAGCAGAATGT 365
||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||
Sbjct 336 AACTGTTGAAGCTCGCAGCGTTGTTGAGCCTATTCGAAACATTGGAAGAAAGAAGAATGT 395
Query 366 TGAGA-TGTCTTTCTTGGAGGCAGAATGTTTCAAAATTGATCCAGGAAGCAAGAAAGTTT 424
||| | | |||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 396 TGATACT-TCTTACCTGGAGGCAGAATGTTTCAAAATTGATCCAGCAAGCAAGAAAGTTT 454
Query 425 ACTGCCGATCAAAACAAGGCGTGAATTCGAAAGGGAAGAAAG-AGTTTGATGTTGACTAT 483
|||||||||| ||||||||| | | ||| ||| |||| |||| | ||| ||||||||||
Sbjct 455 ACTGCCGATCCAAACAAGGCCTTAGTTC-AAATGGAAAAAAGGAATTTTCTGTTGACTAT 513
Query 484 GACTACCTTGTAATCGCTACTGGAGCTCAGTCTAACACATTTAACATTCCTGGCGTGGAG 543
||||| |||||||| || |||||||||||||||||||| |||||||| || || ||||||
Sbjct 514 GACTATCTTGTAATTGCAACTGGAGCTCAGTCTAACACCTTTAACATACCCGGAGTGGAG 573
Query 544 GAGAACTGTCATTTCCTCAAAGAGGTTGAAGATGCACAGAGAATTCGTAGTACTGTCATT 603
|| ||||||||||| || ||||||||||||||||| |||||||| |||| ||||| |||
Sbjct 574 GAAAACTGTCATTTTCTGAAAGAGGTTGAAGATGCTCAGAGAATCCGTAAAACTGTGATT 633
Query 604 GATTCATTTGAGAAGGCAAGTTTACCTGGACTAAACGAACAAGAGAGAAAGAGAATGCTA 663
||||| ||||||||||||||| |||| | ||||| ||| ||||| |||||||||| ||
Sbjct 634 GATTCCTTTGAGAAGGCAAGTCTACCAGAACTAAGCGATGAAGAGCGAAAGAGAATCCTG 693
Query 664 CATTTTGTAGTTGTTGGTGGTGGACCAACAGGTGTTGAGTTTGCTTCTGAGCTTCATGAT 723
|||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 694 CATTTTGTGGTTGTTGGTGGTGGGCCAACAGGTGTTGAGTTTGCCGCTGAGCTGCATGAT 753
Query 724 TTTGTTAAC-GAGGATCTAGTCAAACTATATCCTAAAGCCAAAAACTT-AGTGCAGA-TC 780
||||||| | ||||||||||||| || ||||||| |||||| || ||| | || ||
Sbjct 754 TTTGTTA-CTGAGGATCTAGTCAGTCTTTATCCTAGAGCCAAGGG-TTCAGTAC-GAATC 810
Query 781 ACTCTTCTAGAGGCTGCAGACCACATCTTGACCATGTTTGACAAGAGAATCACAGAGTTT 840
|| ||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 811 ACACTTCTCGAGGCCGCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTT 870
Query 841 GCTGAAGAAAAATTTA-CTAGAGATGGTATTGATGTGAAA-TTAGGTTCTATGGTGG-TC 897
|| |||||||| |||| | |||||||| |||||||||||| || || |||||||| |
Sbjct 871 GCCGAAGAAAAGTTTAGC-AGAGATGGAATTGATGTGAAACTT-GGCTCTATGGTAACT- 927
Query 898 AAAGTGAATGATAAGGAAATTTCTGCAAAAACCAAAGCAGGAGAGGTCTCAACTATTCCT 957
||||||||||| || || || ||||| ||||| |||| ||||||||| || ||||||||
Sbjct 928 AAAGTGAATGAGAAAGATATATCTGCTAAAACGAAAGGAGGAGAGGTTTCCTCTATTCCT 987
Query 958 TATGGAATGATTGTTTGGTCAACTGGTATTGGGACTCGTCCTGTGATCAAAGATTTTATG 1017
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 988 TATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATG 1047
Query 1018 AAACAAATTGGTCAGGGCAATAGACGTGCTTTAGCAACCGATGAATGGCTTCGTGTTGAA 1077
||||||||||||||||| |||||||||||| | ||||| |||||||||||||| || |||
Sbjct 1048 AAACAAATTGGTCAGGGTAATAGACGTGCTCTGGCAACTGATGAATGGCTTCGCGTAGAA 1107
Query 1078 GGATGTGATAATATATATGCACTTGGTGATTGTGCAACAATCAACCAGAGAAAAGTCATG 1137
||| ||||||||||||||| ||||||||||||||||| || |||||| | |||||||||
Sbjct 1108 GGAACTGATAATATATATGCCCTTGGTGATTGTGCAACCATTAACCAGCGCAAAGTCATG 1167
Query 1138 GAAGACATAGCTGCTATATTCAAG-AAAGCAGATAAGGAAAATTCAGGAACACTGACAAT 1196
||||| | ||||||| || | | |||||||| || || || || || |||||||| |
Sbjct 1168 GAAGATGTTTCTGCTATTTTTA-GCAAAGCAGACAAAGACAAGTCTGGGACACTGACTCT 1226
Query 1197 GAAAGAATTTCATGAAGTAATG-AGTGACATATGTGATAGATACCCTCAAGTGGAGCTCT 1255
||||| || || |||| |||| | |||||| |||| ||||||||||||||| |||||||
Sbjct 1227 CAAAGAGTTCCAAGAAGCAATGGA-TGACATTTGTGTTAGATACCCTCAAGTTGAGCTCT 1285
Query 1256 ACTTGAAGAGTAAAGGTATGCATGGCATTACCGATCTTCTAAAACAAGCAC-AAGCTGA- 1313
|||||||||||||| |||||| ||||||| | |||||||| ||| |||| | || ||||
Sbjct 1286 ACTTGAAGAGTAAACGTATGCGTGGCATTGCAGATCTTCTTAAAGAAGC-CGAAACTGAT 1344
Query 1314 GAATGGT-TCCAACAAGT-CTGTCGAACTCGAT-ATAGAAGAACTT-AAATCAGCTCTTT 1369
|| || | ||||| ||| | ||||||| || || |||||| || |||||||||||||
Sbjct 1345 GA-TG-TATCCAAGAAGAACA-TCGAACT-GAAGATCGAAGAA-TTCAAATCAGCTCTTT 1399
Query 1370 GTCAAGTTGACTCACAAGTGAAGCTTCTACCAGCGACAGGACAGGTCGCTGCTCAACAAG 1429
||| |||||||||||||||||| |||| ||||| |||| |||||| ||||| || ||||
Sbjct 1400 CTCAGGTTGACTCACAAGTGAAGTTTCTTCCAGCTACAGCACAGGTTGCTGCGCAGCAAG 1459
Query 1430 G-GACTTACCTTGCAAAATGCTTTGATCGTATGGAAGTAT-GCGAGAAGAATCCTGAAGG 1487
| | ||||||| || |||||||||||||| ||||||| || ||||||||||||| |||||
Sbjct 1460 GTG-CTTACCTAGCTAAATGCTTTGATCGCATGGAAG-ATTGCGAGAAGAATCCAGAAGG 1517
Query 1488 TCCCATTAGGATTAGAGGAGAAGGTCGTCACCGCTTCCGTCCCTTCAGGTATAGACATTT 1547
|||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 1518 TCCCATTAGGATGAGAGGAGAAGGTCGTCATCGTTTCCGCCCCTTCAGGTACAGACATTT 1577
Query 1548 GGGACAATTTGCTCCATTAGGAGGCGAACAAACCGCGGCGCAACTTCCAGGAGACTGGGT 1607
|||||||||||| ||| | ||||| || ||||| || || |||||||||||||| |||||
Sbjct 1578 GGGACAATTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGT 1637
Query 1608 TTCGATAGGACACAGCAGTCAATGGCTGTGGTACTCCGTTTACGCTAGTAAGCAAGTGAG 1667
||| || ||||| ||||| || ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 1638 TTCTATTGGACAAAGCAGCCAGTGGCTCTGGTATTCCGTCTACGCCAGTAAGCAAGTGAG 1697
Query 1668 CTGGCGAACGAGAGTCCTGGTGGTCTCAGACTGGATGAGACGATTCATCTTCGGGAGGGA 1727
|||||| |||||||| || ||||| ||||| |||||||| || |||||||| || |||||
Sbjct 1698 CTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTCATCTTTGGTAGGGA 1757
Query 1728 TTCAAGTCGCATTTGA 1743
||| ||| |||| |||
Sbjct 1758 TTCCAGTAGCATCTGA 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5