BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21500.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946038 jgi|Araly1|946038|scaffold_702267.1 713 0.0
> Ahg946038 jgi|Araly1|946038|scaffold_702267.1
Length=711
Score = 713 bits (386), Expect = 0.0
Identities = 625/730 (86%), Gaps = 58/730 (8%)
Strand=Plus/Plus
Query 3 CTTCGAAACACCGTCACGCCATGGAAGAAGAAACTCTACAAGtcttcttcttctctcatc 62
||||||||| || |||||||||||||| |||||||||||||||| || || || | ||
Sbjct 1 CTTCGAAACTCCATCACGCCATGGAAGGAGAAACTCTACAAGTC-TC--CTCCTTTAATT 57
Query 63 ctctcttctccat-tttcataactctctacagtctaatcctcatctATTTCCCCAATGAT 121
||||||||||| | |||||| |||||||| ||||| || || ||||||||||| ||||||
Sbjct 58 CTCTCTTCTCC-TGTTTCATCACTCTCTATAGTCTTATTCTTATCTATTTCCCTAATGAT 116
Query 122 TTGCTTCGAAtctttctctcccctgttcttctcatctccggagctctccttctctctctt 181
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 117 TTGCTTCGAATCTTTCTCTCCCCTGTTCTTCTCATCTCCGGAGCTCTTCTCCTCTCTCTT 176
Query 182 ctccgtctcGGATCGACCCGAGAACCTAACACCCAACCCGATAAAAGCTAC--G------ 233
||||| ||||| |||||||||||| ||||||||| |||||| ||||||||| |
Sbjct 177 CTCCGCCTCGGGTCGACCCGAGAATCTAACACCCGACCCGAGAAAAGCTACGAGATTCTC 236
Query 234 -AGG-AGTCTGAAGAACCTAAGGTTTTTCTGGTTCGTGAATCCGATTTGATGGGTGGTTT 291
||| || ||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 237 AAGGAAG-CTGAAGAACCTAATGTTTTTCTGGTTCGTGATTCCGATTTGATGGGTGATTT 295
Query 292 TGTGGAATGGAACTTGAGAGCACCATTGGAAGTGATTCACGAAGCTTACgaagatgaaga 351
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 296 TGTGGAATGGAACTTGAGAGCTCCATTGGAAGTGATTCACGAAGCCTACGAAGAAGAAGA 355
Query 352 agaggaaga--agaa-gaagaagaTCCGACCCGGTTTAGAAAAATGGAGAGATTCCCATC 408
||| || || ||| ||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 356 AGAAGAGGATCCGAATGAAAAAGATCCGACCCGGTTTCGAAAAATTGAGAGATTCCCATC 415
Query 409 GTTGTCACTCTGTTACCCAGAATCAGATTCGGAATCGGATTCTGCTTCCTCGTCAGAATT 468
|||||||||||||| || | | |||||||||||||| |||||||| |||||
Sbjct 416 TTTGTCACTCTGTTA-CC-----C--A----GAATCGGATTCTGCCTCCTCGTCTGAATT 463
Query 469 CAATTTCCCGGAAATCGGTGACTGGAACTC-GCCGGAAAATATGGGATTCAGATGGGAAG 527
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 464 CAATTTCCCGGAGATCGGTGACTGGAACTCAG-CGGAAAATATGGGATTCAGATGGGAAG 522
Query 528 A--AG-ACGA-G--GGTGGAATAGGATGTGAAGGTTTGATTGAGATAAAGCTCGATCA-T 580
| || | || | |||||||| ||| | ||||||||||||||||||||||||||| | |
Sbjct 523 AGGAGGAGGACGACGGTGGAATTGGAGGCGAAGGTTTGATTGAGATAAAGCTCGATGAGT 582
Query 581 -TA-T-A--G---CCATAATAGGAAGATGATGAGTAAA---A--CA----GAGATTGATT 623
|| | | | ||||||||| |||||||||| |||| | || ||||||||||
Sbjct 583 ATAATCATCGTAGCCATAATAGCAAGATGATGAATAAATGGAAACAAACAGAGATTGATT 642
Query 624 TTCATGCAGAGGAAGATGGTTTGATCGAGATCGATCTTTTTCCATGAAGAAGAAGAAGAT 683
|||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 643 TTCATGGAGAGGAAGATGGTTTGATCGAGATCGATCTTTTTCAATGAAGTAGAAGAAGAA 702
Query 684 GATGATTCTC 693
|||||| |||
Sbjct 703 GATGAT-CTC 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5