BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21520.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492732 jgi|Araly1|492732|fgenesh2_kg.7__2165__AT4G21520.1 2250 0.0
Ahg951710 jgi|Araly1|951710|scaffold_11700002.1 521 4e-147
> Ahg492732 jgi|Araly1|492732|fgenesh2_kg.7__2165__AT4G21520.1
Length=1346
Score = 2250 bits (1218), Expect = 0.0
Identities = 1293/1329 (97%), Gaps = 5/1329 (0%)
Strand=Plus/Plus
Query 1 GACTGGGGTTTAGAACGAAAGTAAACCTCTCTCTGCTGCTTTTTTCCAGAAGCTCTGACG 60
||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||
Sbjct 1 GACTGGGGTTTAGAACGAAAGTACA-C-CTCTCTGCTGCTTTTTTCGAGAAGCTCTGACG 58
Query 61 AAGAAGATGGGTGAAGAAGAAGCAGTAGCAGAAGAAAATGGTGGACTTAAGGTAGAATCA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 59 AAGAAGATGGGTGAAGAAGAAGCAGTAGCCGAAGAAAATGGTGGACTTAAGGTAGAATCA 118
Query 121 GGAGAACAAAAATCATCCTGGCCTACTATGAGATTTGATGTCTCTCCTTATAGAACGCAC 180
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 GGAGAACAAAACTCATCCTGGCCTACTATGAGATTCGATGTCTCTCCTTATAGAACGCAC 178
Query 181 CATTTCTCTAAGCAGTTCAGGACAGCTCGAAACCCTAATAATTTCCTCAAGGGTCTTAAG 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 CATTTCTCTAAGCAGTTCAGGACCGCTCGAAACCCTAATAATTTCCTCAAGGGTCTTAAA 238
Query 241 TGGTCACCTGATGGTTCATGTTTCCTTGCAAGCTCTGAAGATAATACACTTAGTCTGTTT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 239 TGGTCACCTGATGGTTCATGTTTCCTTGCAAGCTCTGAGGATAATACACTTAGTCTGTTT 298
Query 301 CATCTGCCACAAGATGGAGGGGATTCTAATGGCTATGGAGTGCCAGTCCCTGAAGAAGAT 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 CATCTGCCACAAGATGGAGGGGATTCTATTGGCTATGGAGTGCCAGTCCCTGAAGAAGAT 358
Query 361 TCGTATGGTGCGAGTCTTCTAGTGAATGAGGGTGAATCTGTCTATGATTTCTGTTGGTAT 420
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 359 TCGTATGGTGCGAGTCTTCTTGTGAATGAGGGTGAATCTATCTATGATTTCTGTTGGTAT 418
Query 421 CCATACATGTCAGTTTCAGACCCTTTAACATGCGTCTTCGCTACCTCCACTAGAGACCAT 480
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCTTACATGTCAGTCTCAGACCCTTTAACATGCGTCTTCGCTACCTCCACTAGAGACCAT 478
Query 481 CCGATACATCTTTGGGATAGTACTTCTGGTGAGCTTCGATGCACATACCGGGCCTATGAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCGATACATCTTTGGGATAGTACTTCTGGTGAGCTTCGATGCACATACCGGGCCTATGAT 538
Query 541 GCTATGGATGAAATAACTGCTGCATTTTCAGTTGGATTCAATCCTGATGGAACCAAGATC 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 GCTATGGATGAAATAACTGCTGCATTTTCAGTTGGATTCAATCCTCATGGAACCAAGATC 598
Query 601 TTTGCTGGTTACAACAGCTCCATCAGAGTGTTTGATCTTCATCGTCCTGGAAGAGATTTT 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTGCTGGTTACAACAGCTTCATCAGAGTGTTTGATCTTCATCGTCCTGGAAGAGATTTT 658
Query 661 AGGCAGTATTCAACTCTACAGAAAAACAAAGAGGGCCAAGCAGGTATATTATCTACTCTT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGGCAGTATTCAACTCTACAGAAAAACAAAGAGGGCCAAGCAGGTATATTATCTACTCTT 718
Query 721 GCTTTCTCCCCAACTAATTCTGGAATGTTGGCTGTGGGGTCTTACGGGCAAACTACTGGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 GCTTTCTCCCCAACTAATTCTGGAATGTTGGCTGTGGGGTCTTACGGGCAGACTACTGGG 778
Query 781 ATTTATAGAGAAGACAACATGGAGCTATTGTATGTTTTACATGGTCAAGAAGGCGGTGTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTTATAGAGAAGACAACATGGAGCTATTGTATGTTTTACATGGTCAAGAAGGCGGTGTT 838
Query 841 ACACATGTCCAGTTTTCAAAGGATGGGAACTATTTATATACAGGAGGTCGCAAGGATCCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACACATGTCCAGTTTTCAAAGGATGGGAACTATTTATATACAGGAGGTCGCAAGGATCCT 898
Query 901 TACATTCTTTGCTGGGATATTCGGAAATCTGTTGAAATAGTCTATAAATTGTACAGAGCA 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 TACATTCTTTGCTGGGATATTCGGAAATCTGTTGAGATAGTCTATAAATTGTACAGAGCA 958
Query 961 ACTGAGAACACAAACCAGCGTGTATTCTTTGATATTGAGCCATGTGGTCGACATTTAGGT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACTGAGAACACAAACCAGCGTGTATTCTTTGATATTGAGCCATGTGGTCGACATTTAGGT 1018
Query 1021 ACCGGTGGTCAGGATGGGCTTGTTCACATGTACGATTTACAAACCGGAAACTGGGTTTCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACCGGTGGTCAGGATGGGCTTGTTCACATGTACGATTTACAAACCGGAAACTGGGTTTCT 1078
Query 1081 GGATATCAAGCTGCTTCAGATACCGTCAATGCTTTCTCTTTCCACCCTTACCTTCCAATG 1140
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1079 GGATATCAAGCTGCTTCAGATACCGTCAATGCCTTCTCTTTCCACCCATACCTTCCAATG 1138
Query 1141 GCTGCTACATCCTCTGGTCACAGACGTTTCGCAATTCCAGATGATGACGATGGTGAAGAT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1139 GCTGCTACATCCTCTGGTCACAGACGTTTCGCAATTCCAGATGATGACGATG---AAGAT 1195
Query 1201 AAGAACGAGCTTCAATTGAAAGCTGATGAGAACTGTGTATCTCTCTGGAGTTTCTACGTA 1260
||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1196 AAGAAGGATCTTCAATTAAAAGCTGATGAAAACTGTGTATCTCTCTGGAGTTTCTACGTA 1255
Query 1261 GAGGACAATACTTATGATGAAAACAATGGCGTTGCAAGCGAGTCTCATCTCCAAAATGTC 1320
||| |||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1256 GAGAACAACACTTATGATGAAAACAATTGCGTTACAAGCAAGTCTCATCTCCAAAATGTC 1315
Query 1321 ACCGAAGAA 1329
|| | ||||
Sbjct 1316 ACAGGAGAA 1324
> Ahg951710 jgi|Araly1|951710|scaffold_11700002.1
Length=412
Score = 521 bits (282), Expect = 4e-147
Identities = 296/303 (98%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 48 AGAAGCTCTGACGAAGAAGATGGGTGAAGAAGAAGCAGTAGCAGAAGAAAATGGTGGACT 107
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2 AGAAGCTCTGACGAAGAAGATGGGTGAAGAAGAAGCAGTAGCCGAAGAAAATGGTGGACT 61
Query 108 TAAGGTAGAATCAGGAGAACAAAAATCATCCTGGCCTACTATGAGATTTGATGTCTCTCC 167
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 62 TAAGGTAGAATCAGGAGAACAAAACTCATCCTGGCGTACTATGAGATTTGATGTCTCTCC 121
Query 168 TTATAGAACGCACCATTTCTCTAAGCAGTTCAGGACAGCTCGAAACCCTAATAATTTCCT 227
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 122 TTATAGAACGCACCATTTCTCTAAGCAGTTCAGGACCGCTCGAAACCCTTATAATTTCCT 181
Query 228 CAAGGGTCTTAAGTGGTCACCTGATGGTTCATGTTTCCTTGCAAGCTCTGAAGATAATAC 287
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 182 CAAGGGTCTTAAATGGTCACCTGATGGTTCATGTTTCCTTGCAAGCTCTGAGGATAATAC 241
Query 288 ACTTAGTCTGTTTCATCTGCCACAAGATGGAGGGGATTCTAATGGCTATGGAGTGCCAGT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACTTAGTCTGTTTCATCTGCCACAAGATGGAGGGGATTCTAATGGCTATGGAGTGCCAGT 301
Query 348 CCC 350
|||
Sbjct 302 CCC 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5