BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21530.1 Length=2666 Score E Sequences producing significant alignments: (Bits) Value Ahg492730 jgi|Araly1|492730|fgenesh2_kg.7__2163__AT4G21540.1 845 0.0 Ahg887692 jgi|Araly1|887692|Al_scaffold_0117_3 268 1e-70 > Ahg492730 jgi|Araly1|492730|fgenesh2_kg.7__2163__AT4G21540.1 Length=3897 Score = 845 bits (457), Expect = 0.0 Identities = 490/506 (97%), Gaps = 2/506 (0%) Strand=Plus/Plus Query 1838 ATGGCTTTTCAAATGCCCTTTACAACAATATCAAGAAAGATATCATGTATGAAGTTGTTG 1897 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTCTTCAAATGCCCTTTACAACAATATCAAGAAAGATATCATGTATGAAGTTGTTG 60 Query 1898 CCTCTTTGCCCTCTTCAGTTGTCAACAACGCAAACACCTACAACAATTCCCATGTCTCTT 1957 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCGCTTTGCCCTCTTCAGTTGTCAACAACGCAAACACCTACAACAATTCCCATGTCTCTT 120 Query 1958 TCCTTCTATAAGAATGAACTTTCTGATGATACACCTTGTCAAAGTGGGTACACTGATTAC 2017 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCTTCTATAAGAATGAACTCTCTGATGATACACCTTGTCAAAGTGGGTACACTGATTAC 180 Query 2018 ATATCTTTTCAAGTCCCCGATGAGACCTTCCCAGAGATTTCAAACTGTATTGGCATAGCT 2077 ||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||| Sbjct 181 ATATCTTTTCAAGTCCCCGATGAAACCTTCCCAGAGATTCCGAACTGTGTTGGCATAGCT 240 Query 2078 AAGGGTTATAAGCAGAATTCCAACAATGAGAAAAATGGTTATACTTCTCTGGAAGCCGTT 2137 ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAGGGTTTTAAGCAGAACGCCAACAATGAGAAAAATGGTTATACTTCTCTGGAAGCCGTT 300 Query 2138 TTGTTATCTGTACCTAATGGCTACACTTGTGTTGATTTGTCTCTCTACAAGGATAAAGAA 2197 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 TTGTTATCTGTACCTAATGGCTACACTTGTGTCGATTTGTCTCTCTACAAGGATAAAGAA 360 Query 2198 CTGGTTTTATTATTGAATAAGACAAATACAGATTCCGAAGGCTCGGGAGAAGCATGCATG 2257 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 361 CTGGTTTTATTATTGAATAAGACAAGTGCAGATTCCGAAGGCTCGGGAGAAGCATGCATG 420 Query 2258 ATGGTTGTACAAACTGGTGACCT-CGCATTCATTTCCATTTCAGGATCTAGTTCTCTAAA 2316 ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| Sbjct 421 ATGGTTGTACAAACTGGTGACCTTC-CATTCATTTCCATTTCAAGATCTAGTTCTCTAAA 479 Query 2317 CCAGTGGGAGCTAGAGGATTTGAAGG 2342 |||||||||||||||||||||||||| Sbjct 480 CCAGTGGGAGCTAGAGGATTTGAAGG 505 Score = 300 bits (162), Expect = 4e-80 Identities = 173/178 (97%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 2342 GGCTCGATTGTGAACCTGGAAATGGAGAATGAAAAGGTTCGCAAAGTACCACATTCTGTC 2401 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 535 GGCTCGATTGTTAACCTGGAAATGGAGAATGAAAAGGTTCGCAAAGTTCCACATTCTGTC 594 Query 2402 ATTGCTCCTCTAGCAGTAAGCGCTTCAAGAGGAGTGGCTTGTGTTTTTGCTGAAAGAAGA 2461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 ATTGCTCCTCTAGCAGTAAGCGCTTCAAGAGGAGTGGCTTGTGTTTTTGCTGAAAGAAGA 654 Query 2462 CGAGCTTTGGTGTACATATTGGAAGAAGATGAAGATGAAGAAATCTCTGATGA-AAAG 2518 |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 655 CGAGCTCTGGTGTACATATTGGAAGAAGATGAAGACGAAGAAATCTCTGATGACAAAG 712 > Ahg887692 jgi|Araly1|887692|Al_scaffold_0117_3 Length=186 Score = 268 bits (145), Expect = 1e-70 Identities = 149/151 (99%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 188 ATGTCGGAAATGGCGAGTGACGAGGAAGAAAATATCATTCCTTTCCAGCTCCAGTTCGAC 247 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGTCGGAAATGGCGAGTGACGAGGAAGAAAATATCATTCCTTTCCAGCTACAGTTCGAC 60 Query 248 AAGCCCATACCTTTTCAGATTAAGATAGCTGAGTGGAACCCGGAGAAGGATTTACTGGCA 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGCCCATACCTTTTCAGATTAAGATAGCTGAGTGGAACCCGGAGAAGGATTTACTGGCA 120 Query 308 ATGGTTACTGAGGACTCCAAGATTTTGCTGC 338 ||||||||||||||||| ||||||||||||| Sbjct 121 ATGGTTACTGAGGACTCAAAGATTTTGCTGC 151 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100558246800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5