BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21530.1
Length=2666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492730 jgi|Araly1|492730|fgenesh2_kg.7__2163__AT4G21540.1 845 0.0
Ahg887692 jgi|Araly1|887692|Al_scaffold_0117_3 268 1e-70
> Ahg492730 jgi|Araly1|492730|fgenesh2_kg.7__2163__AT4G21540.1
Length=3897
Score = 845 bits (457), Expect = 0.0
Identities = 490/506 (97%), Gaps = 2/506 (0%)
Strand=Plus/Plus
Query 1838 ATGGCTTTTCAAATGCCCTTTACAACAATATCAAGAAAGATATCATGTATGAAGTTGTTG 1897
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCTTCAAATGCCCTTTACAACAATATCAAGAAAGATATCATGTATGAAGTTGTTG 60
Query 1898 CCTCTTTGCCCTCTTCAGTTGTCAACAACGCAAACACCTACAACAATTCCCATGTCTCTT 1957
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCTTTGCCCTCTTCAGTTGTCAACAACGCAAACACCTACAACAATTCCCATGTCTCTT 120
Query 1958 TCCTTCTATAAGAATGAACTTTCTGATGATACACCTTGTCAAAGTGGGTACACTGATTAC 2017
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTTCTATAAGAATGAACTCTCTGATGATACACCTTGTCAAAGTGGGTACACTGATTAC 180
Query 2018 ATATCTTTTCAAGTCCCCGATGAGACCTTCCCAGAGATTTCAAACTGTATTGGCATAGCT 2077
||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||||
Sbjct 181 ATATCTTTTCAAGTCCCCGATGAAACCTTCCCAGAGATTCCGAACTGTGTTGGCATAGCT 240
Query 2078 AAGGGTTATAAGCAGAATTCCAACAATGAGAAAAATGGTTATACTTCTCTGGAAGCCGTT 2137
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGGGTTTTAAGCAGAACGCCAACAATGAGAAAAATGGTTATACTTCTCTGGAAGCCGTT 300
Query 2138 TTGTTATCTGTACCTAATGGCTACACTTGTGTTGATTTGTCTCTCTACAAGGATAAAGAA 2197
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TTGTTATCTGTACCTAATGGCTACACTTGTGTCGATTTGTCTCTCTACAAGGATAAAGAA 360
Query 2198 CTGGTTTTATTATTGAATAAGACAAATACAGATTCCGAAGGCTCGGGAGAAGCATGCATG 2257
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 361 CTGGTTTTATTATTGAATAAGACAAGTGCAGATTCCGAAGGCTCGGGAGAAGCATGCATG 420
Query 2258 ATGGTTGTACAAACTGGTGACCT-CGCATTCATTTCCATTTCAGGATCTAGTTCTCTAAA 2316
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 421 ATGGTTGTACAAACTGGTGACCTTC-CATTCATTTCCATTTCAAGATCTAGTTCTCTAAA 479
Query 2317 CCAGTGGGAGCTAGAGGATTTGAAGG 2342
||||||||||||||||||||||||||
Sbjct 480 CCAGTGGGAGCTAGAGGATTTGAAGG 505
Score = 300 bits (162), Expect = 4e-80
Identities = 173/178 (97%), Gaps = 1/178 (1%)
Strand=Plus/Plus
Query 2342 GGCTCGATTGTGAACCTGGAAATGGAGAATGAAAAGGTTCGCAAAGTACCACATTCTGTC 2401
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 GGCTCGATTGTTAACCTGGAAATGGAGAATGAAAAGGTTCGCAAAGTTCCACATTCTGTC 594
Query 2402 ATTGCTCCTCTAGCAGTAAGCGCTTCAAGAGGAGTGGCTTGTGTTTTTGCTGAAAGAAGA 2461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATTGCTCCTCTAGCAGTAAGCGCTTCAAGAGGAGTGGCTTGTGTTTTTGCTGAAAGAAGA 654
Query 2462 CGAGCTTTGGTGTACATATTGGAAGAAGATGAAGATGAAGAAATCTCTGATGA-AAAG 2518
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 655 CGAGCTCTGGTGTACATATTGGAAGAAGATGAAGACGAAGAAATCTCTGATGACAAAG 712
> Ahg887692 jgi|Araly1|887692|Al_scaffold_0117_3
Length=186
Score = 268 bits (145), Expect = 1e-70
Identities = 149/151 (99%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 188 ATGTCGGAAATGGCGAGTGACGAGGAAGAAAATATCATTCCTTTCCAGCTCCAGTTCGAC 247
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCGGAAATGGCGAGTGACGAGGAAGAAAATATCATTCCTTTCCAGCTACAGTTCGAC 60
Query 248 AAGCCCATACCTTTTCAGATTAAGATAGCTGAGTGGAACCCGGAGAAGGATTTACTGGCA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCCCATACCTTTTCAGATTAAGATAGCTGAGTGGAACCCGGAGAAGGATTTACTGGCA 120
Query 308 ATGGTTACTGAGGACTCCAAGATTTTGCTGC 338
||||||||||||||||| |||||||||||||
Sbjct 121 ATGGTTACTGAGGACTCAAAGATTTTGCTGC 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100558246800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5