BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21540.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492730 jgi|Araly1|492730|fgenesh2_kg.7__2163__AT4G21540.1 2438 0.0
> Ahg492730 jgi|Araly1|492730|fgenesh2_kg.7__2163__AT4G21540.1
Length=3897
Score = 2438 bits (1320), Expect = 0.0
Identities = 1457/1525 (96%), Gaps = 1/1525 (0%)
Strand=Plus/Plus
Query 18 CTCTCACCAACGACGAAACTCGTCTCCCTCCATCTTG-CTATGGATCGTCAGCCGGAGAG 76
|||||| |||||||| ||||| ||| ||||| ||||| ||||||||||||||||||||||
Sbjct 2373 CTCTCATCAACGACGGAACTCCTCTTCCTCCCTCTTGCCTATGGATCGTCAGCCGGAGAG 2432
Query 77 GGAGAATGATGAACTACCATCTCCGGCGATAATTTCCGACCGAGTTCTGGTAAATGGTGT 136
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2433 GGAGAATGATGAACTACCGTCTCCGGCGATAATTTCCGACCGTGTTCTGGTAAATGGTGT 2492
Query 137 TGTCACGCCGTTAACGTTGACCGCCGAGGGAGAGCTACGATCGACGGAATCTGGACGGCG 196
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2493 TGTCACGCCGTTAACTTTGACCGCCGACGGAGAGCTACGATCGACGGAATCTGGACGCCG 2552
Query 197 GAAATCGACGTTGGCAAAAGAAATCCTGAGTTTCGTCGTGGAAGGTAACAAGGTTAGAGT 256
|||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2553 GAAATCGACGGTGGCGAAAGAAATCCTGAGTTTCGTCGTTGAAGGTAACAAGGTTAGAGT 2612
Query 257 AAAGACCTTGGTTGAGAAAGGAGGAGGAATTTGCTGTAGAGGAAGTGCTGGAGATTATGC 316
|||||| ||||| |||| | ||||||||||||||||| ||||||||| |||||||||| |
Sbjct 2613 AAAGACTTTGGTGGAGAGACGAGGAGGAATTTGCTGTGGAGGAAGTGGTGGAGATTATAC 2672
Query 317 GAGGAACGATTTCGTTTTCGAGCCTCTCTCTGATGAATCTAGAAAGCTTTGGTCCGATAA 376
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2673 GAGGAACGATTTCGTTTTCGAGCCTCTCTCTGATGAATCTAGGAAGCTATGGTCCGATAA 2732
Query 377 GTTCCATCAACACCTCGTCTCTCTCGGTCGGCCAAAGAAATTGCTTGTGTTTGTGAATCC 436
| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2733 GCTCAATCAACATCTCGACTCTCTCGGTCGGCCAAAGAAATTGCTTGTGTTTGTGAACCC 2792
Query 437 GTTTGGCGGGAAGAAAACAGCGAGAAAGATATTTCAAGAGGAAGTAAAGCCATTGTTTGA 496
||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 2793 CTTTGGCGGGAAGAAATCAGCGAGAAAGATTTTTCAAGAGGAAGTGAAGCCATTATTTGA 2852
Query 497 AGATGCAAATATTCAACTTGAGATTCAAGAAACCAAGTATCAGTTGCATGCAAAGGAAAT 556
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2853 AGATGCTAATATTCAAATTGAGATTCAAGAAACCAAGTATCAGTTGCATGCAAAGGAGAT 2912
Query 557 TGTTAGGTCCATGGATGTATCAAAATACGATGGTATTGTTTGTGTTAGCGGTGACGGTAT 616
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2913 TGTTAGGTCTATGGATGTATCAAAATACGATGGTATTGTTTGTGTTAGCGGCGACGGCAT 2972
Query 617 CCTTGTTGAGGTTGTAAATGGACTGCTTGAAAGAGAAGACTGGAAGACTGCCATAAAATT 676
||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 2973 CCTTGTTGAGGTTGTAAATGGACTGCTTGAAAGAGCAGACTGGAAAACTGCCTTAAAATT 3032
Query 677 GCCGATCGGAATGGTCCCTGCAGGAAGTGGTAATGGCATGATTAAATCATTGTTGGAACC 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3033 GCCGATCGGAATGGTCCCTGCAGGAAGTGGTAATGGCATGATTAAATCATTGTTGGAACC 3092
Query 737 GGTAGGGCTTCCTTGTAGTGCAACAAGTGCTACTATTTCGATAATCCGAGGTCGTACACG 796
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3093 GGTAGGGCTTCCTTGTAGTGCAACAAGTGCTACTATTTCGATTATCCGAGGTCGTACACG 3152
Query 797 TTCTCTAGATGTAGCAACTATCTCACAAGGGACTACCAAATTCTTCAGTGTCTTGATGCT 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3153 TTCTCTAGATGTAGCAACTATCTCACAAGGGACTACCAAATTCTTCAGTGTCTTGATGCT 3212
Query 857 TGCTTGGGGTTTAGTGGCTGATATAGACATCGAGTCAGAGAAATTCAGATGGATGGGTAG 916
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3213 TGCTTGGGGTTTAGTGGCTGATATAGACATCGAGTCAGAGAAGTTCAGATGGATGGGTAG 3272
Query 917 TGCTCGCTTTGATATCTATGGTCTTCAGAGGATAATATGCTTAAGACAATACCATGGACG 976
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3273 TGCTCGATTTGATATCTATGGTCTTCAGAGGATAATATGCTTAAGACAATACAATGGACG 3332
Query 977 AATTCTATTTGTGCCAGCTCCTGGGTTCGAAAGCTATGGGCAACGAGCCAGTTGCAGTAT 1036
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 3333 AATTCTATTTGTGCCAGCTCCTGGGTTTGAAAGCTATGGGCAACGAGCCAGTTGCAGTGT 3392
Query 1037 AGATAAAGAGCCATCTGGTAGTGATAAGACACTCGTATACCAAGGACCTGATAGTAAACT 1096
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 3393 AGATAAAGAGTCATCTGGTAGTGATAAGGCACTCATATACCAAGGACCTGATACTAAACT 3452
Query 1097 TGAAAATCTGGATTGGAGAGAAATGAAAGGCCCATTTGTTTCAGTATGGCTTCATAATGT 1156
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3453 CGAAGATCTGGATTGGAGAGAAATGAAAGGCCCATTTGTTTCAGTATGGCTTCATAATGT 3512
Query 1157 TCCCTGGGGTGCTGAGAACACTTTGGCTGCTCCTGACGCTAAGTTTTCTGATGGCTTCCT 1216
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3513 TCCCTGGGGTGCTGAGAACACTTTGGCTGCTCCTGACGCAAAGTTTTCTGATGGCTTCCT 3572
Query 1217 GGATTTGATTGTCATGAAAGACTGTCCTAAACTAGCCTTGCTATCACTTATGACAAAGTT 1276
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3573 GGATTTGATTGTCATGAAAGACTGTCCTAAACTTGCCTTGCTATCACTTATGACAAAGTT 3632
Query 1277 GAGTGATGGAACCCATGTCCAATCACCATATGCATCATATCTGAAGGTGAAGGCATTCGT 1336
|||||||||||| ||||| || |||||||||| ||| |||||||||||||||||||||||
Sbjct 3633 GAGTGATGGAACACATGTTCAGTCACCATATGTATCCTATCTGAAGGTGAAGGCATTCGT 3692
Query 1337 ACTGGAGCCAGGTGCACGCATAGACGAACCAGACAAGGAAGGAATCATAGATTCAGATGG 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3693 ACTGGAGCCAGGTGCACGCATAGACGAACCAGACAAGGAAGGAATCATAGATTCAGATGG 3752
Query 1397 AGAAGTTTTGGCAAGAGGAAGAAAATCGTACAAATGTGATCAAAAGGCTTTGATGTCTTA 1456
||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 3753 AGAGGTTTTGGCAAGAGGAAGAGGATCATACAAATGCGATCAAAAGGCTTTGATGTCTTA 3812
Query 1457 CGACAAGCTTCAAATAAGTGTTGATCAAGGTTTAGCCACTCTCTTCTCTCCTGAATAATT 1516
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3813 TGACAAGCTTCAAATAAGTGTTGATCAAGGTTTAGCCACTCTCTTCTCTCCTGAATAATT 3872
Query 1517 CTGACTGATACATGAGATGTGATGA 1541
|||| ||||||||||||||||||||
Sbjct 3873 CTGATTGATACATGAGATGTGATGA 3897
Score = 1227 bits (664), Expect = 0.0
Identities = 1101/1302 (85%), Gaps = 70/1302 (5%)
Strand=Plus/Plus
Query 226 GTTTCGTCGTGGAAGGTAACAAGG-TTAGAGTAAAGACCTTGGTTGAGAAAGGAGG-AGG 283
||||||| || |||||||| || ||||||||||| | ||||||||||| |||| |||
Sbjct 1031 GTTTCGTTGTCGAAGGTAA-GCGGATTAGAGTAAAGGTCGTGGTTGAGAAA-GAGGCAGG 1088
Query 284 AATTTGCTGTAGAGGAA-GTGCTGGAGATTAT-GCGAGGAACGATTTCGT-TTTCGAGCC 340
||| |||||| || || || |||||||| | | |||||| |||||||| ||| ||| |
Sbjct 1089 AATCTGCTGTGGA-CAATTTGATGGAGATT-TCGTGAGGAAAGATTTCGTCTTT-GAG-C 1144
Query 341 TCTCTCTGAT-GAATCTAGAAA-GCTTTGGTCCGATAAG-TTCCATCAACACCTCG-TCT 396
||||| || | ||| | ||| | |||| | |||| || | |||| |||| | | |
Sbjct 1145 -CTCTC--ATCG-ATC-A-AAATG-GATGGTGCTTTAAGCTT-CGTCAATACCTTGAT-T 1195
Query 397 CTCTCGGTCGGCCAAAGAAATTGCTTGTGTTTGTGAATCCGTTTGGCGGGAAGAAAACAG 456
|||| ||||||||||||| ||| ||||| |||||||| |||||||||||||||||| |
Sbjct 1196 CTCTTGGTCGGCCAAAGAGATTACTTGTATTTGTGAACCCGTTTGGCGGGAAGAAATTGG 1255
Query 457 CGAGAAAGATATTT-CAAGAGGAAGTAAAGCCATTGTTTGAAGATGCAAATATTCAACTT 515
||||| |||| ||| | ||||||| ||||| |||||||||||||| || ||||||||
Sbjct 1256 CGAGAGAGATTTTTGTTA-AGGAAGTGAAGCCGTTGTTTGAAGATGCTGATGTTCAACTT 1314
Query 516 GAGATTCAAGAAACCAAGTATCAGTTGCATGCAAAGGAAATTGTTAGGTCCATGGATGTA 575
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1315 GAGATTCAAGAAACCAAGTATCAGTTGCATGCAAAGGAAATTGTTAAGTCCATGGATGTA 1374
Query 576 TCAAAATACGATGGTATTGTTTGTGTTAGCGGTGACGGTATCCTTGTTGAGGTTGTAAAT 635
|||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1375 TCAAAATATGATGGTATTGTTTGTGTCAGCGGCGATGGTATCCTTGTTGAGGTTGTAAAT 1434
Query 636 GGACTGCTTGAAAGAGAAGACTGGAAGA-CTGCCATAAAATTGCCGATCGGAATGGTCCC 694
|||||||| ||||||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1435 GGACTGCTCGAAAGAGCAGACTGGA-GAACTGCCTTAAAATTGCCGATCGGAATGGTCCC 1493
Query 695 TGCAGGAAGTGGTAATGGCATGATTAAA-TCATTGTTGGA-ACCGGTAGGGCTTCCTTG- 751
|||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||| ||
Sbjct 1494 TGCAGGAACTGGTAATGGCATGAT-AAAGTCATTGTTGGACAC-GGTTGGGCTTCGATGC 1551
Query 752 TAGTGCAACA-AGTGCTACTATTTCGATAATCCGAGGTCGTACACGTTCTCTAGATGTAG 810
| |||||| | |||||||||||||| || |||||||||| || ||||| | ||||||| |
Sbjct 1552 T-GTGCAA-ATAGTGCTACTATTTCTATTATCCGAGGTCATAAACGTTTTGTAGATGTTG 1609
Query 811 CAACTATCT-CACAAGGGACTACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGGTTTA 869
||||||| | ||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1610 CAACTAT-TGCACAAGGGAATACCAAATTCTTCAGTGTGTTGATGCTTGCTTGGGGTTTA 1668
Query 870 GTGGCTGATATAGACATCGAGTCAGAGAAATTCAGATGGATGGGTAGTGCTCGCTTTGA- 928
| ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 1669 ATAGCTGATATAGACATCGAGTCAGAGAGGTTCAGATGGATGGGAAGTGCTCGCATTGAC 1728
Query 929 T---AT---CT----A--T-G--G--TCTTCAGAGGATAATATGCTTAAGACAATACCAT 971
| || || | | | | |||||||||||||||||| |||||||||||| ||
Sbjct 1729 TTCTATGTACTTGTTAAATTGCTGGCTCTTCAGAGGATAATATGTTTAAGACAATACAAT 1788
Query 972 GGACGAATTCTATTTGTGCCAGCTCCTGGGTTCGAAAGCTATGGGCAACGAGCCAGTTGC 1031
||||||||| ||||| | || ||||||||||| |||||||| || || | ||||||||||
Sbjct 1789 GGACGAATTTTATTTCTACCGGCTCCTGGGTTTGAAAGCTACGGACAGCCAGCCAGTTGC 1848
Query 1032 AGTATAGATAAAGAGCCATCTGGTAGTGATAA-GACACTCGTATACCAAGGACCTGATAG 1090
||| || | ||||||||| ||| ||| ||||| || |||| |||||||||||||| |
Sbjct 1849 AGTCTATACAAAGAGCCACCTGTTAGCGATAAAGAG-CTCGGGTACCAAGGACCTGAAAC 1907
Query 1091 TAAACTTGAAAATCTGGATTGGAGAGAAATGAAAGGCCCATTTGTTTCAGTATGGCTTCA 1150
|||| ||||| |||| || ||||||||||| ||||| ||||||||| | |||||||||||
Sbjct 1908 TAAATTTGAAGATCTAGAATGGAGAGAAATCAAAGGTCCATTTGTTACTGTATGGCTTCA 1967
Query 1151 TAATGTTCCCTGGGGTGCTGAGAACACTTTGGCTGCTCCTGAC-GCTAAGTTTTCTGATG 1209
|||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||
Sbjct 1968 CAATGTTCCCTGGGGTGCTGAGAACACTTTGACTGCTCCTG-CTGCAAAGTTTTCTGATG 2026
Query 1210 GCTTCCTGGATTTGATTGTCAT-GAAAGACTGTCCTAAACTAG-CCTTGCTATCACTTAT 1267
|||| ||||| |||||||| || |||| |||| ||||| || | ||| ||| ||||||||
Sbjct 2027 GCTTTCTGGACTTGATTGT-ATTGAAAAACTGCCCTAAGCTTGTCCT-GCTCTCACTTAT 2084
Query 1268 GACAAAGTTGAGT-GATGGAACCCATGTCCAA-TCACCATATGCATCATATCTGAAGGTG 1325
|| | || |||| | |||||| ||||| || ||||| ||| | | ||||| ||||||
Sbjct 2085 GAGACAGACGAGTAG-TGGAACACATGTT-AAGTCACCCTATATAACGTATCTAAAGGTG 2142
Query 1326 AAGGCATTCGTACTGGAGCCAGGTGCACGCATAGACGAACCAGACAAGGAAGGAATCATA 1385
|||||||| || || ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 2143 AAGGCATTTGTGCTAGAGCCGGGTGCACTTATAGACGAACCAGACAAGGAAGGAATCATA 2202
Query 1386 GATTCAGATGGAGAAGTTTTGGCAAGAGGAAGAAA-ATCGTACAAATGTGATCAAAAGGC 1444
|||||||||||||| |||||||||||||||| ||| | | || || ||||||||||||||
Sbjct 2203 GATTCAGATGGAGAGGTTTTGGCAAGAGGAA-AAAGAGCATATAACTGTGATCAAAAGGC 2261
Query 1445 TTTGATGTCTTACGACAAGCTTCAAATAAGTGTTGATCAAGG 1486
||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 2262 TTTGATGTCTTACGACAAGCTTCAAGTAACTGTTGATCAAGG 2303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5