BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21550.1
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946030 jgi|Araly1|946030|scaffold_702259.1 1701 0.0
> Ahg946030 jgi|Araly1|946030|scaffold_702259.1
Length=2251
Score = 1701 bits (921), Expect = 0.0
Identities = 1152/1256 (92%), Gaps = 45/1256 (4%)
Strand=Plus/Plus
Query 3 GCTTTCCTCTTCATCCATGTCATCGTCTTCGTTATCTGCTAGATTTTGCTTCAACCACGA 62
|||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 5 GCTTTCGTCTTCTTCCATGTCATCCTCTTCGTTTTCTGCTAGATTTTGCTTCAACCACGA 64
Query 63 ATGTTTTGAGTTCAAACTCGACCATTGCCGTCCTGGTTGGCGTCTCCGTTCTGGCGATTT 122
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 ATGTTTTGAGTTTAAGCTCGACCATTGCCGTCCTGGTTGGCGTCTCCGTTCTGGCGATTT 124
Query 123 CGTCGACCTCTGTGATCGTTGCGCCTCTGCGTATGAACAAGGAAAGTTTTGTGACGTATT 182
|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 125 CGTCGACCTCTGTGATCGTTGCGCCTCTGCTTATGAGCAAGGACAGTTTTGTGACGTATT 184
Query 183 TCACCAAAGGGCTTCTGGATGGAGGTGTTGTGAGTCATGTGG--A--A--------AGCG 230
||||||||||||||| |||||||||||||||||||||||||| | | ||||
Sbjct 185 TCACCAAAGGGCTTCCGGATGGAGGTGTTGTGAGTCATGTGGAAAGCATTTCGTGCAGCG 244
Query 231 AATTCATTGTGGATGTATTGCGTCTGCTTCTGCTTATACGTTAATGGATGCTGGAGGAAT 290
|||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||
Sbjct 245 AATTCATTGTGGATGTATTGTTTCTGCATCTGCTTTTACGTTACTGGATGCTGGAGGAAT 304
Query 291 TGAGTGTTTGGCTTGCGCAAG-AAAAAAGTTTGCTTTGGGACCCAATTTTTCGCCATCAC 349
||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||
Sbjct 305 TGAGTGTTTGGCTTGCGCAAGAAAAAAAG-TTGCTTTGGGATCCACTTTTTCGCCATCAC 363
Query 350 CGTCCTTTCTTTTCCAGTCTCCAATTTCTGAGAAATTCAAGGACTTGTCGATCAACTGGA 409
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 364 CGTCCTTTCTTTTCCAATCTCCAATTTCTGAGAAATTCAACGACTTGTCGATCAACTGGA 423
Query 410 GTTCTTCAACTAGATCAAATCAGATAAGCTACCAGCCTCCTAGTTGTTTAGATCCTTCAG 469
|||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 424 GTTCCTCAACTAGGTCAAATCAGATAAGCTACCAGCCTCCTAGTTATTTAGGTCCTTCAG 483
Query 470 TTCTGCAGTTTGATTTTCGTAATCGTGGAGGTAATAATGAATTTAGTCAACCTGCTTCTA 529
|||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 484 CTCTGCAGTTTGATTCGCGTAATCGTGGAGGTAATAATGAGTTTAGTCAACCTACTTCTA 543
Query 530 AAGAAAGGGTCACTGCATGTACCATGGAG-aaaaaaaGGGGAATGAATGACATGATAGGG 588
|||| |||| |||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 544 AAGACAGGGCCACTGCATGTCCCATGG-GCAAAAAAAGGGGAATGAATGACATGATAGGG 602
Query 589 AAATTAATGAGTGAAAACTCGAAACATTATAGAGTATCTCCTTTTCCAAATGTCAATGTA 648
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 603 AAACTAATGAGTGAAAACTCGAAACATTATAAAGTATCTCCTTTTCCAAATGTCAATGTA 662
Query 649 TATCACCCACTGATCTCACTAAAGGAGGGTCCATGTGGGACACAGCTTGCGTTTCCTGTG 708
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TATCACCCACTGATCTCAATAAAGGAGGGTCCATGTGGGACACAGCTTGCGTTTCCTGTG 722
Query 709 CCAATTACAACACCAATTGAGAAAACTGGTCACTCTAGACTAGATGGAAGTAATTTATGG 768
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CCAATGACAACACCAATTGAGAAAACTGGTCACTCTAGACTAGATGGAAGTAATTTATGG 782
Query 769 CACACACGTAATTCTTCTCCGCTAAGTCGCTTACACAATGACTTGAATGGTGGAGCAGAC 828
|| |||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 783 CATACACCTAATTCATCTCCACTAAGTCGCTTACACAATGACTTGAATGGTGGATCAGAC 842
Query 829 TCGCCATTCGAAAGCAAAAGTCGTAATGTGATGG-CTCATCTTGAGACGCCAGGAAAATA 887
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 843 TCGCCATTCGAAAGCAAAAGTCGTAATGTGA-GGACTCATCTTGATACGCCAGGAAAATA 901
Query 888 TCAGGTGGTTCCACGATTTTGGCCCAAGGTTTCATATAAAAACCAAGTTCTGCAGAATCA 947
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TCAGGTGGTTCCACGATATTGGCCCAAGGTTTCATATAAAAACCAAGTTCTGCAGAATCA 961
Query 948 ATCAAAAGA--ATC-TGAATC-CGTTGTC-ACTCCTCTCTTTGAGAAGAT--C------C 994
||||||||| ||| | || | || | | | || | ||| ||| || | |
Sbjct 962 ATCAAAAGAGTATCCTTCTTCTC-TTATAGA-TACTA-CATTG-GAATATAACTTTATGC 1017
Query 995 TGAGTGCAACTGATACTGGAA-AGC-GG-C---TGGTCCTGCCAAAGAAATATGCAGAGG 1048
||||||||| ||||||||||| || || | |||| ||||||||||||| ||||||||
Sbjct 1018 TGAGTGCAAGTGATACTGGAATAGTTGGGCGAGTGGTGCTGCCAAAGAAATGTGCAGAGG 1077
Query 1049 CTTTCTTGCCCCAACTTTCCCACACCAAAGGTGTGCCTCTCACAGTACAGGACCCAATGG 1108
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 CTTTCTTGCCCCAACTTTCCCACACCCAAGGTGTGCCTCTCACAGTACAGGACCCAATGG 1137
Query 1109 GTAAAGAGTGGAGATTTCAGTTTCGCTTTTGGCCCAGCAGCAA-AGGCAGAATATATGTT 1167
|||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1138 GTAAAGAGTGGACATTTCAGTTTCGCTTTTGGCCCAGCAGGAATAG-CAGAATATATGTT 1196
Query 1168 CTAGAGGGAGTAACTCCATTCATACAGA-CCTTGCAGTTGCAGGCTGGTGATACAG 1222
||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 1197 CTAGAGGGAGTAACTCCATGCATACAGAGCCT-GCAGTTGCAGGCTGGTGATACAG 1251
Score = 1332 bits (721), Expect = 0.0
Identities = 887/963 (92%), Gaps = 27/963 (3%)
Strand=Plus/Plus
Query 1221 AGTCATATTCAGTCGATTAGATCCAGAAAGGAAGTTAATTTTGGGATTCAGAAAGGCTTC 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AGTCATATTCAGTCGATTAGATCCAGAAAGGAAGTTAATTTTGGGATTCAGAAAGGCTTC 1354
Query 1281 GATTACTCAATCGTCTGATCAGGCTGATCCGGCTGATATGCATTCACCGTTTGAAGTTAA 1340
| |||||| ||| |||||||||||||| ||||||||||||||||||| | | |||||||
Sbjct 1355 GGTTACTCGATCATCTGATCAGGCTGAAACGGCTGATATGCATTCACCATCTAAAGTTAA 1414
Query 1341 GAAGTCTGCTTATATAACTAAAGAAACCCCAGGAGTAGAATGTTCCTCTGGTAAGAAGAA 1400
||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct 1415 GAAGTCTGCTTATATAACTAACGAATCCCCAGGAGTAGAATGTTCCTCCGGTAAGAAGAA 1474
Query 1401 AAGCAGCATGATGATTACAAGAAGTAAACGTCAAAAAGTTGAAAAGGGAGACGACAACTT 1460
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1475 AAGCAGCATGATGATTACAAGAAGTAAACGTCAAAAAGTTGAAAAGGGAGACCACAACTT 1534
Query 1461 GCTGAAGCTAACATGGGAAGAAGCTCAAGGATTTCTCCTGCCTCCTCCCAACCTCACTCC 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 GCTGAAGCTAACATGGGAAGAAGCTCAAGGATTTCTCCTGCCTCCTCCCAACCTCACTCC 1594
Query 1521 ATCTAGAGTTGTGATAGAGGATTACGAGTTTGAGGAGTATGAGGAGGCTCCAATCATCGG 1580
||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1595 ATCCAGAGTTGTGATAGAGGATTATGAGTTTGAGGAGTATGAGGATGCTCCAATCATTGG 1654
Query 1581 GAAGCCTACTGATGTTGCAGGATCAACGTGCACTGAAGTTGAAGGACTGTTGATATCACC 1640
||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1655 GAAACCTACTGATGCTGCAGGATCAACATGCACAGAAGTTGAAGGACTGTTGATATCACC 1714
Query 1641 AACAACCACAAAGCACCCACGACATAGAGATGGCTGTACTTGCATCATTTGCATACAATC 1700
||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 1715 CACAACCACAAAGCACCCACGACATAGAAATGGCTGCACTTGCATCGTTTGCATACAATC 1774
Query 1701 CCCAAGTGGGATAGGTCCTAAACACGACCGATGCTGTTCTTGTGCAGTCTGCGACACTAA 1760
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 1775 CCCAAGTGGGATAGGTCCTAAACACGACCGACGCTGTTCTTGTGCGGTCTGCGAAACTAA 1834
Query 1761 CAAACGCCGTAGGCGTTCCCTGTTGCTACGGAGGGAAAAGAAGCAGATGGAGAAAGAAGA 1820
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1835 AAAACGCCGTAGGCGTTCTCTGTTGCTACGGAGGGAAAAGATGCAGATGGAGAAAGAAGA 1894
Query 1821 CAATGCGCGCAAGTTGCTCGAGCAACTGAATTCTGATAATGGACTTCACCAATCTGCTAA 1880
|||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1895 CAATGCGCACAAGGAGCTCGAGCAACTGAACTCTGATAATGGACTTCACCAATCTGCTAA 1954
Query 1881 CAACAGTGAGAATCATGAGCGTCATG---C---T-----TC--GC--C---TTTGAAA-G 1921
|||||||||||||||||||||||||| | | || || | ||||||| |
Sbjct 1955 CAACAGTGAGAATCATGAGCGTCATGATTCGCCTGAGCGTCATGCTTCGCCTTTGAAAAG 2014
Query 1922 TTCAATTAGATTTGAACTTCAAACCAGA-AAAGGACGAAGAATCTCTCCCTGGTTCTAAC 1980
| |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 2015 T-CAATTAGATTTGAACTTCAAACCAGAGAAAG-ACGAAGAATCTCTGCCTGGTTCTAAC 2072
Query 1981 AAAACTACCAAGAGCGAGACTCTGCC-TCATGATGACACAGTAAAGTCTAGCTTCACGTC 2039
||||||||| ||| | ||||| | || |||| |||||||||| || |||||||||| |||
Sbjct 2073 AAAACTACCGAGAACAAGACTTT-CCATCATAATGACACAGTGAATTCTAGCTTCAAGTC 2131
Query 2040 ACCAAGCTCATCAAGTGCTCATAGCCAAAATAACAAGGAAGATGAAGGAAAACTCAAGAC 2099
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2132 ACCAAGCTCATCAAGTGCTCATAGCCAAAATAACAAGGAAGATGAAGGAAAACTCAGGAA 2191
Query 2100 AACCACAGAAATTGCAGACACCACCACCACAAGCTCCATGTAGATTTTGCAGACTCTTAT 2159
|| ||||||| ||||||||||||| || | | |||||||||||||||||||||||| |||
Sbjct 2192 AAACACAGAAGTTGCAGACACCACTAC-A-A-GCTCCATGTAGATTTTGCAGACTCCTAT 2248
Query 2160 AGC 2162
|||
Sbjct 2249 AGC 2251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87950375705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5