BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21560.1
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492725 jgi|Araly1|492725|fgenesh2_kg.7__2158__AT4G21560.1 1869 0.0
> Ahg492725 jgi|Araly1|492725|fgenesh2_kg.7__2158__AT4G21560.1
Length=1223
Score = 1869 bits (1012), Expect = 0.0
Identities = 1169/1240 (94%), Gaps = 30/1240 (2%)
Strand=Plus/Plus
Query 33 TGGCTCTCTGCTCGAACGATTCTCTCTGATAACCCGATTGTCAACTCCACAGCCCACAGA 92
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TGGCTCTCTGCTCGAGCGATTCTCTCTGATAACCCGATTGTCAACTCCACAGGTCACAGA 60
Query 93 CAGAGACAGAGTTCGTTGCCTTGCCTCCGTGTTGTTTTGTTCATACCGCGTGAAAAGCTT 152
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TAGAGACAGAGTTCGTTGCCTTGCCTCCGTGTTGTTTTGTTCATACCGCGTG-AAAGC-- 117
Query 153 TCATCATCAATTCATCATCATAAAGAGGTGTCGTGTGAGCACACGCAATCTCCCAAtctc 212
| | || | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118 T--T--TC-A-TCATCATCATAAAGAGGTGTCGTGTGAGCACACGCAATCT-CCAATCTC 170
Query 213 tcttctctctctctctctcCAATCTCCATATCTTTGTCCTCTATAATCCGGAGAAGTAGC 272
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 171 TCTTCTCTCTCTCTCTCTCCAATCTCCATATCTTTCTCCTC--TAATCCGGAGAAGTAGC 228
Query 273 TCTACCATCGAAATCTCCCAACTTGCTTCCTTCTAGGAAGCtttttgctttttgttttCG 332
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 229 TCCACCATCGAAATCTCCCAACTTGCTTCCTTGTAGGAAGCTTTTTGCTTTTTGTTTTCG 288
Query 333 TCTTTGCGCGTGTCCCATTCTCTTCTCCAAAGTTCCCTATAATAGTGAAAGCTCATCAAG 392
|| |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 289 TCATTGCGCGTGTCCCATTCTCTTCTCCATAGTTCCCTAT-ATACTGAAAGCTCATCAAG 347
Query 393 ---TTATT---TAGCTCTCAGTTTCTGAAAGATGGAGGTCAAGTTATGGAATGATAAGCG 446
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TTATTATTAGCTAGCTCTCAGTTTCTGAAAGATGGAGGTCAAGTTATGGAATGATAAGCG 407
Query 447 TGAGAGAGAAATGTATGAGAATTTCGCAGAGCTTTATGCTATCATCAAAGCTACTGAGAA 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TGAGAGAGAAATGTATGAGAATTTCGCAGAGCTTTATGCTATCATCAAAGCTACTGAGAA 467
Query 507 GCTCGAGAAGGCTTATATTCGTGATCTAATCTCTCCATCTGAATACGAAACCGAGTGCCA 566
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 468 GCTCGAGAAGGCTTATATCCGTGATCTGATCTCTCCATCTGAATACGAAACCGAGTGCCA 527
Query 567 GAAACTCATTGTTCACTTCAAGACATTATCTGCATCTCTCAAAGATATGGTCCCAAACAT 626
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 528 GAAACTCATTGTCCACTTCAAGACATTATCTGCATCGCTCAAGGATATGGTCCCAAACAT 587
Query 627 TGAGAGATTTGCAGAGACGTACAAGATGGATTGCTCAGCTGCAGTTTATCGCCTTGTGAC 686
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 588 TGAAAGATTTGCAGAGACGTACAAAATGGATTGCTCAGCTGCAGTTTATCGCCTTGTCAC 647
Query 687 TTCTGGTGTTCCAGCTACTGTGGAGCATAGAGCTGCTGCTTCGGCTTCTACATCAAGCTC 746
|||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 648 TTCTGGTGTTCCTGCTACTGTGGAGCATCGAGCTGCTGCTTCTGCTTCTACATCAAGCTC 707
Query 747 TGCTTCTGTTGTTGCTGAGTGTGTTCAGAACTTCATCACTTCCATGGATTCTTTGAAACT 806
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 708 TGCTTCTGTTGTTGCTGAGTGTGTTCAGAACTTTATCACTTCCATGGATTCTCTGAAACT 767
Query 807 CAACATGGTTGCTGTTGATCAGGTGTATCCGTTGTTGTCTGATCTCTCGGCTTCTCTTAA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CAACATGGTTGCTGTTGATCAGGTGTATCCGTTGTTGTCTGATCTCTCGGCTTCTCTTAA 827
Query 867 CAAACTAAGTATATTGCCACCAGATTTCGAGGGGAAGATTAAGATGAAGGAATGGCTTTT 926
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 828 CAAACTAAGTATTTTGCCACCGGATTTCGAGGGGAAGATTAAGATGAAGGAATGGCTTCT 887
Query 927 GAGGCTGTCAAAGATGGGAGCTTCAGATGAACTCACTGAGCAGCAGGCTCGGCAACTTCA 986
|||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 888 GAGGCTGTCAAAGATGGGAGCTTCAGATGAGCTCACTGAGCAGCAAGCAAGGCAACTTCA 947
Query 987 CTTTGATCTTGAGTCATCCTATAACTCGTTCATGGCTGCTTTGCCTAATGCTGGTAATTA 1046
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 948 CTTTGACCTTGAGTCATCCTATAACTCGTTCATGGCTGCTTTGCCTAACGCTGGTAATTG 1007
Query 1047 ACCGATGTGCCACTAGAGA-CTGATGTGTGTTCGGTTTATTTTGTTT-AGTTTGGCTTTA 1104
||||| ||||||||||||| | ||||||||||||||||||||||||| | || |||||||
Sbjct 1008 ACCGACGTGCCACTAGAGAAC-GATGTGTGTTCGGTTTATTTTGTTTGACTT-GGCTTTA 1065
Query 1105 TGTAGTTATAATGATGGCTTT-AGGAACAAAGATTTTTGTTTCATGACAATTTGCTACAT 1163
||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||
Sbjct 1066 TGTAGTTATAATGATGGCTTTTAGGA-CAATGATTTTTGTTTCAAGACAATTTGCTACAT 1124
Query 1164 ATATTTTGGGGATGAATGTTCGTAG-A--CAAAACAAGCTTTTCCTTTTGTTGTGTAAAA 1220
| ||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1125 ACATTTTGGGGATGAATGTTCGTAGTAGGCAGAACAAGCTTTTCCTTTTGTTGTGTAAAA 1184
Query 1221 GATGATGCCAATCCAGAAA-TTGtttttttCATGAAGTGT 1259
||| ||||||||||||||| ||||||||| |||||| |||
Sbjct 1185 GATCATGCCAATCCAGAAAATTGTTTTTT-CATGAAATGT 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5