BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21570.1 Length=1380 Score E Sequences producing significant alignments: (Bits) Value Ahg492722 jgi|Araly1|492722|fgenesh2_kg.7__2155__AT4G21570.1 1781 0.0 > Ahg492722 jgi|Araly1|492722|fgenesh2_kg.7__2155__AT4G21570.1 Length=1209 Score = 1781 bits (964), Expect = 0.0 Identities = 1083/1140 (95%), Gaps = 9/1140 (1%) Strand=Plus/Plus Query 3 ACAAAACCGTGTGGACGAATCAGAGAGACACATGTATACCAATGCCGACTTCTTTTTATG 62 ||||| |||||||| |||||||||| |||||||| |||||||||||| | | ||||| Sbjct 1 ACAAATCCGTGTGGGCGAATCAGAGTCTCACATGTAGACCAATGCCGAC-T-TGGTTATG 58 Query 63 CAATCGTAGCGTCTCTCTCACGTGGTAAACGCGTCGCCATTTTTATAATACGACCACGTT 122 ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 59 CAATCGTAGCGTCTCACTCACGTGGTAAACGCGTCGCCATTTTTTTAATATGACCACGTT 118 Query 123 TGTGACTCCATTAATGGCGGTCTCATGCTCCCTCAATTCTTCATGATCTAACTACTAAGA 182 |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| Sbjct 119 TGTGACTCCATTAATGGCGGTCTCGTGCTCCCTCAATTCTTCATGA--T--CTACTAAGA 174 Query 183 GATCTGATTCACTTTCTTCACACTCTC-C-GAGTCTCATCTTCGCTTCTTCCCTAGCTCT 240 |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 175 GATCTGATTCAC-TTCTTCACACTCTCTCTTAGTCTCATCTTCGCTTCTTCCCTAGCTCT 233 Query 241 TATCTGGACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTATTGC 300 ||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 234 TATGTGGAAACAATGATGGACCTAACGAAACTGAAACCTCCGCAGATCACTTTTTATTGC 293 Query 301 TCGGCGTTTTCCGTCTTGCTCACACTTCATTTCACGATACAGCTTGTATCGCAGCATCTC 360 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 294 TCGGCGTTTTCCGTCTTGCTCACAGTTCATTTCACGATACAGCTTGTGTCGCAGCATCTC 353 Query 361 TTCCACTGGAAGAACCCTAAGGAACAAAAGGCTATACTCATCATTGTGCTTATGGCTCCT 420 || ||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||||| Sbjct 354 TTTCACTGGAAGAACCCTAAGGAACAGAAGGCTATTCTCGTTATTGTTCTTATGGCTCCT 413 Query 421 ATCTACGCCGTTGTTTCCTTTATTGGTTTGTTAGAAGTCAAAGGAAGTGAAACCTTCTTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 ATCTACGCCGTTGTTTCCTTTATTGGTTTGTTAGAAGTCAAAGGAAGTGAAACCTTCTTC 473 Query 481 CTCTTTCTTGAATCCATCAAAGAATGCTACGAAGCTCTTGTCATTGCCAAATTCTTGGCA 540 | ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct 474 TTGTTTCTTGAATCCATCAAGGAATGCTATGAAGCTCTCGTCATTGCCAAATTCTTGGCA 533 Query 541 TTGATGTATAGTTATCTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAA 600 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TTGATGTATAGTTATTTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAA 593 Query 601 GGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTTCAGCCTCATGTAGTCCGTTTG 660 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 594 GGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTCCAGCCTCATGTAGTCCGTTTG 653 Query 661 GATCGTCACACTCTTAAACTTTTGAAATACTGGACATGGCAATTTGTGGTCATTCGACCC 720 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GATCATCACACTCTTAAACTTTTGAAATACTGGACATGGCAATTTGTGGTCATTCGACCA 713 Query 721 GTGTGCTCCACTTTGATGATAGCTTTACAGCTCATCGGGTTTTATCCTTCATGGTTGAGC 780 ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 714 GTGTGCTCCACTTTGATGATAGCTTTACAACTCATTGGGTTTTATCCTTCTTGGTTGAGC 773 Query 781 TGGACATTCACTATCATTGTCAATTTCTCGGTTTCTCTGGCCTTGTATTCTCTTGTGATA 840 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 774 TGGACATTCACTATCATTGTCAATTTCTCGGTTTCTCTGGCGTTGTATTCTCTTGTGATA 833 Query 841 TTCTACCATGTGTTTGCTAAGGAGCTTGCTCCTCATAATCCACTCGCAAAGTTCCTCTGC 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 TTCTACCATGTGTTTGCTAAGGAGCTTGCTCCTCATAATCCACTCGCAAAGTTCCTCTGC 893 Query 901 ATCAAAGGAATTGTCTTCTTTGTCTTTTGGCAGGGAATAGCACTAGACATACTGGTGGCA 960 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 894 ATCAAAGGAATTGTCTTCTTTGTCTTTTGGCAGGGAATAGCACTAGACATTCTGGTGGCA 953 Query 961 ATGGGATTCATAAAATCTCACCATTTCTGGTTGGAGGTAGAACAAATCCAAGAAGCAATT 1020 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 954 ATGGGATTCATCAAATCTCACCATTTCTGGCTGGAGGTAGAGCAAATCCAAGAAGCAATT 1013 Query 1021 CAGAATGTGTTGGTATGTCTTGAGATGGTTATCTTCGCTGCGGTTCAGAAACACGCTTAT 1080 |||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| Sbjct 1014 CAGAATGTGTTGGTATGTCTTGAGATGGTTATCTTCGCTGTGGTTCAGAAGCATGCTTAT 1073 Query 1081 CATGCTGGTCCTTATAGCGGCGAGACCAAGAAGAAACTCGATAAAAAGACCGAATGATTT 1140 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1074 AATGCTGGTCCTTATAGCGGTGAGACCAAGAAGAAACTCGATAAAAAGACAGAATGATTT 1133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51656552535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5