BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21570.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492722 jgi|Araly1|492722|fgenesh2_kg.7__2155__AT4G21570.1 1781 0.0
> Ahg492722 jgi|Araly1|492722|fgenesh2_kg.7__2155__AT4G21570.1
Length=1209
Score = 1781 bits (964), Expect = 0.0
Identities = 1083/1140 (95%), Gaps = 9/1140 (1%)
Strand=Plus/Plus
Query 3 ACAAAACCGTGTGGACGAATCAGAGAGACACATGTATACCAATGCCGACTTCTTTTTATG 62
||||| |||||||| |||||||||| |||||||| |||||||||||| | | |||||
Sbjct 1 ACAAATCCGTGTGGGCGAATCAGAGTCTCACATGTAGACCAATGCCGAC-T-TGGTTATG 58
Query 63 CAATCGTAGCGTCTCTCTCACGTGGTAAACGCGTCGCCATTTTTATAATACGACCACGTT 122
||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 59 CAATCGTAGCGTCTCACTCACGTGGTAAACGCGTCGCCATTTTTTTAATATGACCACGTT 118
Query 123 TGTGACTCCATTAATGGCGGTCTCATGCTCCCTCAATTCTTCATGATCTAACTACTAAGA 182
|||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||
Sbjct 119 TGTGACTCCATTAATGGCGGTCTCGTGCTCCCTCAATTCTTCATGA--T--CTACTAAGA 174
Query 183 GATCTGATTCACTTTCTTCACACTCTC-C-GAGTCTCATCTTCGCTTCTTCCCTAGCTCT 240
|||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 175 GATCTGATTCAC-TTCTTCACACTCTCTCTTAGTCTCATCTTCGCTTCTTCCCTAGCTCT 233
Query 241 TATCTGGACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTATTGC 300
||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 234 TATGTGGAAACAATGATGGACCTAACGAAACTGAAACCTCCGCAGATCACTTTTTATTGC 293
Query 301 TCGGCGTTTTCCGTCTTGCTCACACTTCATTTCACGATACAGCTTGTATCGCAGCATCTC 360
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 294 TCGGCGTTTTCCGTCTTGCTCACAGTTCATTTCACGATACAGCTTGTGTCGCAGCATCTC 353
Query 361 TTCCACTGGAAGAACCCTAAGGAACAAAAGGCTATACTCATCATTGTGCTTATGGCTCCT 420
|| ||||||||||||||||||||||| |||||||| ||| | ||||| ||||||||||||
Sbjct 354 TTTCACTGGAAGAACCCTAAGGAACAGAAGGCTATTCTCGTTATTGTTCTTATGGCTCCT 413
Query 421 ATCTACGCCGTTGTTTCCTTTATTGGTTTGTTAGAAGTCAAAGGAAGTGAAACCTTCTTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 ATCTACGCCGTTGTTTCCTTTATTGGTTTGTTAGAAGTCAAAGGAAGTGAAACCTTCTTC 473
Query 481 CTCTTTCTTGAATCCATCAAAGAATGCTACGAAGCTCTTGTCATTGCCAAATTCTTGGCA 540
| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 474 TTGTTTCTTGAATCCATCAAGGAATGCTATGAAGCTCTCGTCATTGCCAAATTCTTGGCA 533
Query 541 TTGATGTATAGTTATCTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAA 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTGATGTATAGTTATTTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAA 593
Query 601 GGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTTCAGCCTCATGTAGTCCGTTTG 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 594 GGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTCCAGCCTCATGTAGTCCGTTTG 653
Query 661 GATCGTCACACTCTTAAACTTTTGAAATACTGGACATGGCAATTTGTGGTCATTCGACCC 720
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GATCATCACACTCTTAAACTTTTGAAATACTGGACATGGCAATTTGTGGTCATTCGACCA 713
Query 721 GTGTGCTCCACTTTGATGATAGCTTTACAGCTCATCGGGTTTTATCCTTCATGGTTGAGC 780
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 714 GTGTGCTCCACTTTGATGATAGCTTTACAACTCATTGGGTTTTATCCTTCTTGGTTGAGC 773
Query 781 TGGACATTCACTATCATTGTCAATTTCTCGGTTTCTCTGGCCTTGTATTCTCTTGTGATA 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 774 TGGACATTCACTATCATTGTCAATTTCTCGGTTTCTCTGGCGTTGTATTCTCTTGTGATA 833
Query 841 TTCTACCATGTGTTTGCTAAGGAGCTTGCTCCTCATAATCCACTCGCAAAGTTCCTCTGC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTCTACCATGTGTTTGCTAAGGAGCTTGCTCCTCATAATCCACTCGCAAAGTTCCTCTGC 893
Query 901 ATCAAAGGAATTGTCTTCTTTGTCTTTTGGCAGGGAATAGCACTAGACATACTGGTGGCA 960
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 894 ATCAAAGGAATTGTCTTCTTTGTCTTTTGGCAGGGAATAGCACTAGACATTCTGGTGGCA 953
Query 961 ATGGGATTCATAAAATCTCACCATTTCTGGTTGGAGGTAGAACAAATCCAAGAAGCAATT 1020
||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 954 ATGGGATTCATCAAATCTCACCATTTCTGGCTGGAGGTAGAGCAAATCCAAGAAGCAATT 1013
Query 1021 CAGAATGTGTTGGTATGTCTTGAGATGGTTATCTTCGCTGCGGTTCAGAAACACGCTTAT 1080
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 1014 CAGAATGTGTTGGTATGTCTTGAGATGGTTATCTTCGCTGTGGTTCAGAAGCATGCTTAT 1073
Query 1081 CATGCTGGTCCTTATAGCGGCGAGACCAAGAAGAAACTCGATAAAAAGACCGAATGATTT 1140
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1074 AATGCTGGTCCTTATAGCGGTGAGACCAAGAAGAAACTCGATAAAAAGACAGAATGATTT 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5