BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21580.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492720 jgi|Araly1|492720|fgenesh2_kg.7__2153__AT4G21580.1 1655 0.0
> Ahg492720 jgi|Araly1|492720|fgenesh2_kg.7__2153__AT4G21580.1
Length=1154
Score = 1655 bits (896), Expect = 0.0
Identities = 1088/1177 (92%), Gaps = 27/1177 (2%)
Strand=Plus/Plus
Query 71 aagaagaggacttgaatacggaagcttgagagaatgaaagCGATCGTGATCTCGGAGCCA 130
||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAAGACTTGCATACGGAAGCTT--GAGAATGAAAGCGATCGTGATCTCGGAGCCA 58
Query 131 GGTAAGCCGGAGGTTCTGCAACTCCGTGATGTGGCAGACCCAGAAGTTAAAGACGATGAG 190
|||||||| |||||||||||||| ||||||||||||| |||||||| || |||||||||
Sbjct 59 GGTAAGCCAGAGGTTCTGCAACTGTGTGATGTGGCAGATCCAGAAGTCAAGGACGATGAG 118
Query 191 GTTCTCATCAGAGTTCTCGCTACTGCTTTGAATCGTGCAGATACTCTCCAAAGACTTGGC 250
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 119 GTTCTCATCAGAGTTCTCGCCACTGCTTTGAATCGTGCCGATACTCTCCAAAGACTTGGC 178
Query 251 CTTTATAATCCACCACCTGGCTCAAGCCCTTACCTTGGTCTCGAATGTTCTGGGACCATT 310
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 179 CTTTACAATCCACCACCTGGCTCAAGCCCTTACCTTGGTCTCGAGTGTTCTGGAACCATT 238
Query 311 GAATCCGTCGGTAAAGGCGTCTCTCGATGGAAAGTCGGAGACCAGGTGTGTGCTCTTCTT 370
||||| || || ||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 239 GAATCTGTTGGCAAAAACGTCTCTCGATGGAAGGTTGGAGACCAGGTGTGTGCTCTTCTT 298
Query 371 TCTGGAGGAGGTTATGCAGAGAAAGTTTCTGTTCCTGCTGGACAAATTTTCCCAATTCCC 430
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 299 TCTGGAGGAGGTTATGCAGAGAAAGTCTCTGTTCCTGCTGGACAAATTTTCCCAATACCC 358
Query 431 GCTGGTATCTCTC-TAAAGGATGCAGCGGCTTTCCCTGAAGTGGCATGCACTGTTTGGTC 489
||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 GCTGGTATCTCTCTTAAA-GATGCAACGGCTTTCCCTGAAGTGGCATGCACTGTTTGGTC 417
Query 490 TACTGTCTTCATGATGGGCCGTCTCTCTGTTGGTGAATCATTCTTGATTCATGGAGGTTC 549
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 418 TACTGTCTTCATGATGGGCCGTCTCTCCGCTGGTGAATCATTCTTGGTTCATGGAGGTTC 477
Query 550 AAGTGGGATTGGGACATTTGCTATTCAGATAGCTAAACATCTGGGAGTGAGAGTATTTGT 609
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 478 AAGTGGGATTGGGACTTTTGCAATTCAGATAGCTAAACATCTAGGAGTGAGAGTATTTGT 537
Query 610 CACAGCTGGGAGTGATGAAAAGCTAGCTGCGTGCAAAGAACTCGGGGCTGATGTTTGTAT 669
||||| |||| ||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 538 AACAGCAGGGAATGAGGAAAAGCTAGCTGCCTGCAAAGAACTTGGGGCTGATGTTTGTAT 597
Query 670 AAATTACAAAACCGAGGATTTTGTTGCAAAGGTAAAAGCGGAAACCGATGGGAAAGGAGT 729
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 598 AAATTACAAAACCGAGGACTTTGTCGCAAAGGTAAAAGCGGAAACTGATGGGAAAGGTGT 657
Query 730 GGATGTTATCTTGGACTGCATTGGGGCACCGTATTTGCAGAAAAATCTCGACAGCTTAAA 789
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 658 GGATGTTATCTTGGACTGCATTGGGGCACCGTATTTGCAGAAAAACCTCGACAGCTTAAA 717
Query 790 CTTT-GATGGAAGGTTATGTATTATCGGTTTAATGGGAGGAGCCAATGCAGAAATAAAAC 848
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 -TTTCGATGGTAGGTTATGTATTATCGGATTAATGGGAGGAGCCAATGCAGAAATAAAAC 776
Query 849 TAAGTAGTCTGCTTCCAAAGCGTCTCACTGTCTTAGGAGCTGCATTAAGACCAAGAAGCC 908
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 777 TAAGTAGTCTGCTTCCAAAGCGTCTCACTGTCTTAGGAGCTGCGTTAAGACCAAGAAGCC 836
Query 909 CTGAAAACAAAGCAGTTGTTGTAAGG-GAAGTCGAGAAGAATGTCTGGCCAGCGATAGAA 967
||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 837 CTGAAAACAAAGCGGTTGTTGTA-GCAGAAGTCGAGAAGAATGTGTGGCCAGCGATAGAA 895
Query 968 GCAGGGAAGGTAAAACCAGTGATTTACAAGTATTTACCATTGTCACAAGCAGCAGAAGGT 1027
|| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
Sbjct 896 GCGGGGAAGGTAAAACCGGTGATTCACAAGTATTTACCATTGTCACAAGCAGCAGAAGCT 955
Query 1028 CATAGCCTTATGGAGAGTAGCAACCATATTGGTAAGATTCTCCTTGAGACTTGATTCTCT 1087
||||||||||||||||||||||| || |||||||||||||| |||||||| |||| ||||
Sbjct 956 CATAGCCTTATGGAGAGTAGCAAACACATTGGTAAGATTCTGCTTGAGACCTGATCCTCT 1015
Query 1088 GCAAAGGGAGAAATGTTCAGAGACAAGAGTCATGGTCAATAATCAATAAAATCTGGTCGA 1147
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1016 GGAAAGGGAGAAATGTTCAGAGACAAGAGTCATGGTGAATAATCAATAAAATCTGGTCAA 1075
Query 1148 TTCTGTTCATAGATATCTCTTTACAAGAGTTCTGTTTGTTGGCTTT-TATGTATCTCTGA 1206
| ||||||||||||| | | || |||| | | |||| | | |||||||||
Sbjct 1076 CTGTGTTCATAGATAT-T--------G--TT-TGTT-G--G-CTTTCT-T-TATCTCTGA 1117
Query 1207 TTTGGTCAAAAAGACACTGTAACTATGGAACATATAT 1243
|||| ||||||||||| ||||||||||||||||||||
Sbjct 1118 TTTGTTCAAAAAGACAATGTAACTATGGAACATATAT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5