BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21585.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492719 jgi|Araly1|492719|fgenesh2_kg.7__2152__AT4G21585.1 1430 0.0
Ahg492716 jgi|Araly1|492716|fgenesh2_kg.7__2149__AT4G21600.1 776 0.0
Ahg492718 jgi|Araly1|492718|fgenesh2_kg.7__2151__AT4G21590.1 765 0.0
> Ahg492719 jgi|Araly1|492719|fgenesh2_kg.7__2152__AT4G21585.1
Length=900
Score = 1430 bits (774), Expect = 0.0
Identities = 859/901 (95%), Gaps = 2/901 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCGTCGCTGCGACAGTGGTTTGCTAGAGTACTCGTGCTTACACAGCTCATCAAT 60
|||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGACTTCGTCGCTACGACTGTGGTTTGCTACAGTACTCGTGCTTACACAGCTCATCAAT 60
Query 61 GGAGCTCTGTGTTGGGGAAAAGAAGGTCACTACACAGTCTGCAAAATAGCCGAGAGCTAC 120
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 61 GGAGCTCTGTGTTGGGGAAAAGAAGGCCATTACACCGTCTGCAAAATAGCCGAGAGCTAC 120
Query 121 TTTG-AGGAAGAAACTGTAGCTGCGGTGAAGAAACTTCTACCTAAATCAGCTGATGGAGA 179
|||| | ||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||
Sbjct 121 TTTGCA-GAAGAAACTGTAGCTGCAGTGAAGAAACTTTTACCTGAATCAGCTGATGGTGA 179
Query 180 TCTAGCATCTGTTTGCTCATGGCCTGATGAGATTAAGCACCATTGGCAATGGCGATGGAC 239
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 180 TCTAGCATCTGTTTGCTCATGGCCTGATGAGATTAAACACCATTGGCAATGGAGATGGAC 239
Query 240 TAGCCCTTTGCACTATGTTGACACACCTGATTACAGATGCAACTACGAGTATTGTCGGGA 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAGCCCTTTGCACTATGTTGATACACCTGATTACAGATGCAACTACGAGTATTGTCGGGA 299
Query 300 TTGCCATGATACTCATAAGAATCAAGACCGGTGTGTGACAGGAGCTATTTTCAATTACAC 359
||||||||||||||||||| |||||||||| |||||||| ||||| ||||| ||||||||
Sbjct 300 TTGCCATGATACTCATAAGCATCAAGACCGTTGTGTGACTGGAGCGATTTTTAATTACAC 359
Query 360 TATGCAACTTATGTCCGCTTCTGAAAACTCGGATACTATAGTCCACTACAACTTGACAGA 419
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 TATGCAACTTATGTCGGCTTCTGAAAACTCGCATACTATAGTCCACTACAACTTGACAGA 419
Query 420 GGCTCTCATGTTCTTATCACATTTTATTGGAGATATTCACCAGCCCTTGCATGTTGGTTT 479
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 420 GGCTCTAATGTTCTTATCACATTTTATCGGAGATATTCACCAGCCCTTACATGTTGGTTT 479
Query 480 TCTGGGAGATGAAGGTGGAAACACGATAACAGTCCGCTGGTACCGTCGCAAAACAAATTT 539
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 TCTGGGAGACGAAGGTGGAAACACGATAATAGTCCGCTGGTACCGTCGCAAAACAAATTT 539
Query 540 ACACCATGTCTGGGATAACATGATAATTGAGTCTGCTCTTAAAACATACTACAATAAAAG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCACCATGTCTGGGATAACATGATAATTGAGTCTGCTCTTAAAACATACTACAATAAAAG 599
Query 600 TCTTCCACTCATGATTGAAGCACTTCAAGCCAATCTTACGAACGACTGGTCAAATGATGT 659
|||||||||| | ||| ||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 600 TCTTCCACTCTTTATTCAAGCACTTCAAACCAATCTTACGCACGGCTGGTCAAATGATGT 659
Query 660 TCCATTGTGGGAGTCATGTCAACTTAACCAAACGGCCTGTCCAAATCCGTACGCATCTGA 719
||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TCCGTCGTGGGAGTCATGTCAACTTAACCAAACGGCCTGTCCGAATCCGTACGCATCTGA 719
Query 720 AAGCATAAATCTAGCCTGCAAGTATGCTTATAGGAACGCTACCCCAGGGACTACTTTAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGCATAAATCTAGCCTGCAAGTATGCTTATAGGAACGCTACCCCAGGGACTACTTTAGG 779
Query 780 AGATGACTATTTCCTCTCTCGGTTACCCATTGTGGAGAAGAGACTTGCGCAAGGTGGGAT 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 AGATGACTATTTCCTCTCTCGGTTACCCATTGTGGAGAAGAGACTTGCACAAGGTGGGAT 839
Query 840 ACGCTTGGCAGCCACTCTTAACCGTATCTTTTCTTCAAAACCTAAGCATGCTGGATCATG 899
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 ACGCTTGGCGGCCACTCTAAACCGTATCTTTTCTTCTAAACCTAAGCATGCTGGATCATG 899
Query 900 A 900
|
Sbjct 900 A 900
> Ahg492716 jgi|Araly1|492716|fgenesh2_kg.7__2149__AT4G21600.1
Length=903
Score = 776 bits (420), Expect = 0.0
Identities = 679/802 (85%), Gaps = 26/802 (3%)
Strand=Plus/Plus
Query 118 TACTTTGAGGAAGAAACTGTAGCTGCGGTGAAGAAACTTCTACCTAAATCAGCTGATGGA 177
||||||||||| || ||| | ||||| |||||||||||||| ||| |||| ||||||||
Sbjct 4 TACTTTGAGGATGATACTATTGCTGCAGTGAAGAAACTTCTGCCTGAATCTGCTGATGGT 63
Query 178 GATCTA-G-CATCTGTTTGCTCATGGCCTGATGAGATTAAGCACCAT-TGGCAATGGCGA 234
|||||| | || | ||||||| ||||||||||| ||||| | | | | |||||||| |
Sbjct 64 GATCTAGGTGAT-T-TTTGCTCTTGGCCTGATGAAATTAAAAAAC-TCTCGCAATGGCAA 120
Query 235 TGGACTAGCCCTTTGCACTATGTTGACACACCTGATTACAGATGCAACTACGAGTATTGT 294
||||||||| |||||||||||||| |||| ||| | |||||||||||||||| ||||||
Sbjct 121 TGGACTAGCGCTTTGCACTATGTTAACACTCCTAAAGACAGATGCAACTACGAATATTGT 180
Query 295 CGGGATTGCCATGATACTCATAAGAATCAAGACCGGTGTGTGACAGGAGCTATTTTCAAT 354
||||| |||||||| ||||||||| || ||| | |||| ||||||||||| || ||||||
Sbjct 181 CGGGACTGCCATGACACTCATAAGCATAAAGGCTGGTGCGTGACAGGAGCAATCTTCAAT 240
Query 355 TACACTATGCAACTT-ATGTCCGCTTCTGAAAACT--C-G----GA--TACT-A-TAGTC 402
||||| | ||| || ||||| ||||||||||||| | | | |||| | | ||
Sbjct 241 TACACAAAACAA-TTAATGTCTGCTTCTGAAAACTCACAGAATTTATTTACTAATTTGTG 299
Query 403 CAC-TACAACTTGACAGAGGCTCTCATGTTCTTATCACATTTTATTGGAGATATTCACCA 461
| | |||||||||||||||||||||||||||||||||| ||| |||||| |||| ||
Sbjct 300 TGCGAAAAACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATGTTCATCA 359
Query 462 GCCCTTGCATGTTGGTTTTCTGGGAGATGAAGGTGGAAACACGATAACAGTCCGCTGGTA 521
|||||||||| ||||||||| |||||| |||||| ||||| |||| |||| ||||||
Sbjct 360 GCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTGGTA 419
Query 522 CCGTCGCAAAACAAATTTACACCATGTCTGGGATAACATGATAATTGAGTCTGCTCTTA- 580
|| | | |||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 420 CCATAACGAAACAAATTTGCACCATGTCTGGGATAACATGATAATTGACTCTGCTCT-AG 478
Query 581 AAACATACTACAATAAAAGTCTTCCACTCATGATTGAAGCACTTCAAGCCAATCTTACGA 640
|||||||||||||| ||| ||||||| ||||||| |||| ||||||||||| || | ||
Sbjct 479 AAACATACTACAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCCAAACTCAAGA 538
Query 641 ACGACTGGTCAAATGATGTTCCATTGTGGGAGTCATGTCAACTTA-ACCAAACGGCCTGT 699
||| |||||||||||||||||| | |||| |||||||||| ||| |||||| |||||||
Sbjct 539 ACGGCTGGTCAAATGATGTTCCGTCGTGGAAGTCATGTCA-CTTTCACCAAAAGGCCTGT 597
Query 700 CCAAATCCGTACGCATCTGAAAGCATAAATCTAGCCTGCAAGTATGCTTATAGGAACGCT 759
||||||| ||| || ||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct 598 CCAAATCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGTATGCTTACAGGAACGCT 657
Query 760 ACCCCAGGGACTACTTTAGGAGATGACTATTTCCTCTCTCGGTTACCCATTGTGGAGAAG 819
|| ||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||
Sbjct 658 ACTCCAGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGAAG 717
Query 820 AGACTTGCGCAAGGTGGGATACGCTTGGCAGCCACTCTTAACCGTATCTTTTCTTCAAAA 879
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct 718 AGACTTGCACAAGGTGGGATTCGCTTGGCAGCGACTCTTAACCGTATCTTTTCTGCAAAA 777
Query 880 CCTAAGCAT-GCTGGATCATGA 900
|| |||| | ||||||| ||||
Sbjct 778 CCGAAGC-TCGCTGGATTATGA 798
> Ahg492718 jgi|Araly1|492718|fgenesh2_kg.7__2151__AT4G21590.1
Length=1007
Score = 765 bits (414), Expect = 0.0
Identities = 723/871 (83%), Gaps = 25/871 (3%)
Strand=Plus/Plus
Query 35 TACTCGTGCTTACACAGCTC-ATCAATGGAGCTCTGTGTTGGGGAAAAGAAGGTCACTAC 93
|||| ||||||||||||||| || |||||||||| ||||||||| | || |||||||||
Sbjct 41 TACTAGTGCTTACACAGCTCGTTC-ATGGAGCTCTCTGTTGGGGAGACGATGGTCACTAC 99
Query 94 ACAGTCTGCAAAATAGC-CGAGAGCTACTTTGAGGAAGAAACTGTAGCTGCGGTGAAGAA 152
| |||||||||||||| | || | || ||||||||||||||||||| ||| ||||||||
Sbjct 100 GCTGTCTGCAAAATAGCTC-AGGGTTATTTTGAGGAAGAAACTGTAGTTGCTGTGAAGAA 158
Query 153 ACTTCTACCTAAATCAGCTGATGGAGATCTAGCATCTGTTTGCTCATGGCCTGATGAGAT 212
||||| ||| |||| || |||| || |||||| ||||||| |||||||||||||||||
Sbjct 159 GCTTCTGCCTGAATCTGCAAATGGTGAGCTAGCAGCTGTTTGTTCATGGCCTGATGAGAT 218
Query 213 TAAGCACCAT-TGGCAATGGCGATGGACTAGCCCTTTGCACTATGTTGACACACCTGATT 271
|| | | | |||||||||||||||||| ||||||| | || ||| ||||||||||
Sbjct 219 AAAAAAGC-TCCCGCAATGGCGATGGACTAGTGCTTTGCATTTTGCTGATACACCTGATT 277
Query 272 ACAGATGCAACTACGAGTATTGTCGGGATTGCCATGATACTCATAAGAATCAAGACCGGT 331
||| ||||||||| ||||||| | |||| | || | | | | | ||||| |||
Sbjct 278 ACAAATGCAACTATGAGTATTCTAGGGA----C-TG-T-C-C-T----A--AAGACTGGT 322
Query 332 GTGTGACAGGAGCTATTTTCAATTACACTATGCAACTTATGTCCGCTTCTGAAAACTCGG 391
||||||||||||| || ||||||||||| | ||||| ||||| |||||||||| |||
Sbjct 323 GTGTGACAGGAGCAATCTTCAATTACACAAACCAACTAATGTCTGCTTCTGAAATCTCAC 382
Query 392 ATACTATAGTCCACTACAACTTGACAGAGGCTCTCATGTTCTTATCACATTTTATTGGAG 451
| | |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 383 AGAGTATAGTCCGCTACAACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAG 442
Query 452 ATATTCACCAGCCCTTGCATGTTGGTTTTCTGGGAGATGAAGGTGGAAACACGATAACAG 511
|||| || |||| || |||| |||||| | |||||| |||||| |||| |||| ||
Sbjct 443 ATATCCATCAGCTTTTACATGAAGGTTTTATTGGAGATCTAGGTGGTAACAAAATAAAAG 502
Query 512 TCCGCTGGTACCGTCGCAAAACAAATTTACACCATGTCTGGGATAACATGATAATTGAGT 571
||| ||||||| || | |||| ||||| |||| ||| |||||| |||||||||||||||
Sbjct 503 TCCACTGGTACAATCACGAAACTAATTTGCACCGTGTGTGGGATGACATGATAATTGAGT 562
Query 572 CTGCTCTTA-AAACATACTACAATAAAAGTCTTCCACTCATGATTGAAGCACTTCAAGCC 630
||||||| | |||||||||| ||| ||| ||||||| ||||||| |||| |||||||||
Sbjct 563 CTGCTCT-AGAAACATACTATAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCC 621
Query 631 AATCTTACGAACGACTGGTCAAATGATGTTCCATTG-TGGGAGTCATGTCAACTTAACCA 689
|| || | ||||| ||||||||||||||| || || |||||||||||||||||||||||
Sbjct 622 AAACTCAAGAACGGCTGGTCAAATGATGTACC-TTCATGGGAGTCATGTCAACTTAACCA 680
Query 690 AACGGCCTGTCCAAATCCGTACGCATCTGAAAGCATAAATCTAGCCTGCAAGTATGCTTA 749
||||||||| |||||||| || || ||||||||||| |||| |||||||||||||||||
Sbjct 681 AACGGCCTGCCCAAATCCATATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTA 740
Query 750 TAGGAACGCTACCCCAGGGACTACTTTAGGAGATGACTATTTCCTCTCTCGGTTACCCAT 809
||||| || ||| |||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 741 CAGGAATGCCACCGCAGGGACTACTTTAGGAGATTACTATTTTGTCTCTCGGTTACCCGT 800
Query 810 TGTGGAGAAGAGACTTGCGCAAGGTGGGATACGCTTGGCAGCCACTCTTAACCGTATCTT 869
||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||
Sbjct 801 TGTAGAGAAGAGACTTGCACAAGGCGGGATTCGCTTGGCGGCGACTCTTAACCGAATCTA 860
Query 870 TTCTTCAAAACCTAAGCATGCTGGATCATGA 900
|||| ||||| | || | |||| || |||||
Sbjct 861 TTCTACAAAATCAAAACTTGCTAGAGCATGA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5