BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21590.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492718 jgi|Araly1|492718|fgenesh2_kg.7__2151__AT4G21590.1 1472 0.0
Ahg492716 jgi|Araly1|492716|fgenesh2_kg.7__2149__AT4G21600.1 732 0.0
Ahg492719 jgi|Araly1|492719|fgenesh2_kg.7__2152__AT4G21585.1 721 0.0
> Ahg492718 jgi|Araly1|492718|fgenesh2_kg.7__2151__AT4G21590.1
Length=1007
Score = 1472 bits (797), Expect = 0.0
Identities = 934/998 (94%), Gaps = 17/998 (2%)
Strand=Plus/Plus
Query 183 ATGTGGATTGTGAGTATACTCGTGCTTACACAGCTCGTTAATGGAGCTCTCTGTTGGGGA 242
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 25 ATGTGGATTGTGAGTATACTAGTGCTTACACAGCTCGTTCATGGAGCTCTCTGTTGGGGA 84
Query 243 GACGCTGGTCATTACGCTGTCTGCAAAATAGCTCAGAGTTATTTTGAGGAAGATACTGTA 302
|||| |||||| |||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 85 GACGATGGTCACTACGCTGTCTGCAAAATAGCTCAGGGTTATTTTGAGGAAGAAACTGTA 144
Query 303 GTTGCTGTGAAGAAACTTCTGCCTGAATCTGCAAATGGTGAGCTAGCAGCTGTTTGCTCA 362
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 145 GTTGCTGTGAAGAAGCTTCTGCCTGAATCTGCAAATGGTGAGCTAGCAGCTGTTTGTTCA 204
Query 363 TGGCCTGATGAAATCAAAAAGCTCCCGCAATGGCGATGGACTAGTGCTTTGCATTTTGCT 422
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 TGGCCTGATGAGATAAAAAAGCTCCCGCAATGGCGATGGACTAGTGCTTTGCATTTTGCT 264
Query 423 GATACGCCTGATTACAAATGCAACTATGAGTACTCTCGGGACTGTCCTAAAGACTGGTGT 482
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 265 GATACACCTGATTACAAATGCAACTATGAGTATTCTAGGGACTGTCCTAAAGACTGGTGT 324
Query 483 GTGACAGGGGCAATCTTCAATTACACTAACCAACTAATGTCTACTTCTGAAAACTCACAG 542
|||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 325 GTGACAGGAGCAATCTTCAATTACACAAACCAACTAATGTCTGCTTCTGAAATCTCACAG 384
Query 543 AGTATAGTCCACTATAACTTAACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGAT 602
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGTATAGTCCGCTACAACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGAT 444
Query 603 ATCCATCAGCCTTTACATGAAGGTTTTATTGGAGATCTAGGTGGTAACAAGATAAAAGTT 662
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 445 ATCCATCAGCTTTTACATGAAGGTTTTATTGGAGATCTAGGTGGTAACAAAATAAAAGTC 504
Query 663 CACTGGTACAATCAGGAAACTAATTTGCACCGTGTGTGGGATGATATGATAATTGAGTCT 722
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 505 CACTGGTACAATCACGAAACTAATTTGCACCGTGTGTGGGATGACATGATAATTGAGTCT 564
Query 723 GCTCTAGAAACATACTACAATTCAAGCCTTCCACGCATGATTCATGAACTTCAAGCCAAA 782
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 565 GCTCTAGAAACATACTATAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCCAAA 624
Query 783 CTCAAGAACGGCTGGTCAAACGATGTACCTTCATGGGAGTCATGTCAACTTAACCAAACG 842
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 625 CTCAAGAACGGCTGGTCAAATGATGTACCTTCATGGGAGTCATGTCAACTTAACCAAACG 684
Query 843 GCCTGCCCAAATCCGTATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTACAGG 902
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GCCTGCCCAAATCCATATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTACAGG 744
Query 903 AACGCCACCGCAGGGACTACTTTAGGAGATTACTATTTCGTCTCTCGGTTACCGGTGGTA 962
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 745 AATGCCACCGCAGGGACTACTTTAGGAGATTACTATTTTGTCTCTCGGTTACCCGTTGTA 804
Query 963 GAGAAGAGACTTGCACAAGGCGGAATTCGCTTGGCAGG-GACTCTTAACCGAATATTTTC 1021
||||||||||||||||||||||| ||||||||||| || ||||||||||||||| | |||
Sbjct 805 GAGAAGAGACTTGCACAAGGCGGGATTCGCTTGGC-GGCGACTCTTAACCGAATCTATTC 863
Query 1022 TGCAAAA-CGGAAGCTTGCTAGAGCATGAAAAAAGATCCAGGAGAATCACTTGAACATCC 1080
| ||||| | || |||||||||||||||| ||||||||| | | ||||||||||||||
Sbjct 864 TACAAAATCAAAA-CTTGCTAGAGCATGAATAAAGATCCA--A-A-TCACTTGAACATCC 918
Query 1081 ATGAACACTCTTATGTATTAATAATGTGTAATGGTAGTAGTTAAGGTTATGGTTTGGTAT 1140
| |||||||||| |||| | | ||||||||||||| | |||||||||||||| |||
Sbjct 919 AAGAACACTCTTTTGTA--A-T---GTGTAATGGTAGT--T-AAGGTTATGGTTTGCTAT 969
Query 1141 TGTTCCTGCGTTTTAACTATAATAAGTATGAAACGAAA 1178
|||||||| ||||||||||||||||||||||||| |||
Sbjct 970 TGTTCCTGAGTTTTAACTATAATAAGTATGAAACCAAA 1007
> Ahg492716 jgi|Araly1|492716|fgenesh2_kg.7__2149__AT4G21600.1
Length=903
Score = 732 bits (396), Expect = 0.0
Identities = 671/799 (84%), Gaps = 37/799 (5%)
Strand=Plus/Plus
Query 285 TTTGAGGAAGATACTGTAGTTGCTGTGAAGAAACTTCTGCCTGAATCTGCAAATGGTGAG 344
|||||||| |||||| | | ||| |||||||||||||||||||||||||| |||||||
Sbjct 7 TTTGAGGATGATACTATTGCTGCAGTGAAGAAACTTCTGCCTGAATCTGCTGATGGTGAT 66
Query 345 CTAGCAGCTGTTTGCTCATGGCCTGATGAAATCAAAAAGCTCCCGCAATGGCGATGGACT 404
|||| | | ||||||| |||||||||||||| ||||| ||| ||||||||| |||||||
Sbjct 67 CTAGGTGATTTTTGCTCTTGGCCTGATGAAATTAAAAAACTCTCGCAATGGCAATGGACT 126
Query 405 AGTGCTTTGCATTTTGCTGATACGCCTGATTACAAATGCAACTATGAGTACTCTCGGGAC 464
|| |||||||| | || | | || ||| | ||| ||||||||| || || | |||||||
Sbjct 127 AGCGCTTTGCACTATGTTAACACTCCTAAAGACAGATGCAACTACGAATATTGTCGGGAC 186
Query 465 TG---T--C-CT-A-AAG-----A--CTGGTGTGTGACAGGGGCAATCTTCAATTACACT 509
|| | | || | ||| | |||||| |||||||| |||||||||||||||||
Sbjct 187 TGCCATGACACTCATAAGCATAAAGGCTGGTGCGTGACAGGAGCAATCTTCAATTACACA 246
Query 510 AACCAACTAATGTCTACTTCTGAAAACTCACAG-----A-GTA-T-A---GTCCAC-TAT 557
|| ||| |||||||| ||||||||||||||||| | || | | || | |
Sbjct 247 AAACAATTAATGTCTGCTTCTGAAAACTCACAGAATTTATTTACTAATTTGTGTGCGAAA 306
Query 558 AACTTAACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATATCCATCAGCCTTTA 617
||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 307 AACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATGTTCATCAGCCCTTG 366
Query 618 CATGA-AGGTTTTATTGGAGATCTAGGTGGTAACA-AGATAAAAGTTC-ACTGGTACAAT 674
||| | |||||| ||||||||||||||||||||| | |||| || || |||||||| ||
Sbjct 367 CAT-ACTGGTTTTCTTGGAGATCTAGGTGGTAACACA-ATAATAG-TCAACTGGTACCAT 423
Query 675 CAGGAAACTAATTTGCACCGTGTGTGGGATGATATGATAATTGAGTCTGCTCTAGAAACA 734
| ||||| |||||||||| ||| |||||| | ||||||||||| |||||||||||||||
Sbjct 424 AACGAAACAAATTTGCACCATGTCTGGGATAACATGATAATTGACTCTGCTCTAGAAACA 483
Query 735 TACTACAATTCAAGCCTTCCACGCATGATTCATGAACTTCAAGCCAAACTCAAGAACGGC 794
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 484 TACTACAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCCAAACTCAAGAACGGC 543
Query 795 TGGTCAAACGATGTACCTTCATGGGAGTCATGTCAACTTA-ACCAAACGGCCTGCCCAAA 853
|||||||| ||||| || || ||| |||||||||| ||| |||||| |||||| |||||
Sbjct 544 TGGTCAAATGATGTTCCGTCGTGGAAGTCATGTCA-CTTTCACCAAAAGGCCTGTCCAAA 602
Query 854 TCCGTATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTACAGGAACGCCAC-CG 912
|| |||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 603 TCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGTATGCTTACAGGAACGCTACTC- 661
Query 913 CAGGGACTACTTTAGGAGATTACTATTTCGTCTCTCGGTTACCGGTGGTAGAGAAGAGAC 972
|||||||||||||||||||| | |||||| | ||||||||||| || |||||||||||||
Sbjct 662 CAGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGAAGAGAC 721
Query 973 TTGCACAAGGCGGAATTCGCTTGGCAGGGACTCTTAACCGAATATTTTCTGCAAAACGGA 1032
|||||||||| || ||||||||||||| |||||||||||| || ||||||||||||| ||
Sbjct 722 TTGCACAAGGTGGGATTCGCTTGGCAGCGACTCTTAACCGTATCTTTTCTGCAAAACCGA 781
Query 1033 AGCTTGCTAGAGCATGAAA 1051
|||| ||| || ||||||
Sbjct 782 AGCTCGCTGGATTATGAAA 800
> Ahg492719 jgi|Araly1|492719|fgenesh2_kg.7__2152__AT4G21585.1
Length=900
Score = 721 bits (390), Expect = 0.0
Identities = 717/873 (82%), Gaps = 29/873 (3%)
Strand=Plus/Plus
Query 199 TACTCGTGCTTACACAGCTCGTTAATGGAGCTCTCTGTTGGGGAGACGCTGGTCATTACG 258
|||||||||||||||||||| | ||||||||||| ||||||||| | | || ||||||
Sbjct 35 TACTCGTGCTTACACAGCTCATCAATGGAGCTCTGTGTTGGGGAAAAGAAGGCCATTACA 94
Query 259 CTGTCTGCAAAATAGCTC-AGAGTTATTTTG-AGGAAGATACTGTAGTTGCTGTGAAGAA 316
| |||||||||||||| | |||| || |||| | ||||| ||||||| ||| ||||||||
Sbjct 95 CCGTCTGCAAAATAGC-CGAGAGCTACTTTGCA-GAAGAAACTGTAGCTGCAGTGAAGAA 152
Query 317 ACTTCTGCCTGAATCTGCAAATGGTGAGCTAGCAGCTGTTTGCTCATGGCCTGATGAAAT 376
|||| | |||||||| || ||||||| |||||| |||||||||||||||||||||| ||
Sbjct 153 ACTTTTACCTGAATCAGCTGATGGTGATCTAGCATCTGTTTGCTCATGGCCTGATGAGAT 212
Query 377 CAAAAAGC-TCCCGCAATGGCGATGGACTAGTGCTTTGCATTTTGCTGATACGCCTGATT 435
||| | | | ||||||| |||||||||| ||||||| | || |||||| |||||||
Sbjct 213 TAAACACCAT-TGGCAATGGAGATGGACTAGCCCTTTGCACTATGTTGATACACCTGATT 271
Query 436 ACAAATGCAACTATGAGTACTCTCGGGA----C-TG-T-C-C-T----A--AAGACTGGT 480
||| ||||||||| ||||| | |||||| | || | | | | | ||||| | |
Sbjct 272 ACAGATGCAACTACGAGTATTGTCGGGATTGCCATGATACTCATAAGCATCAAGACCGTT 331
Query 481 GTGTGACAGGGGCAATCTTCAATTACACTAACCAACTAATGTCTACTTCTGAAAACTCAC 540
||||||| || || || || |||||||||| ||||| ||||| ||||||||||||| |
Sbjct 332 GTGTGACTGGAGCGATTTTTAATTACACTATGCAACTTATGTCGGCTTCTGAAAACTCGC 391
Query 541 AGAGTATAGTCCACTATAACTTAACAGAGGCTCTCATGTTCTTATCACATTATATGGGAG 600
| | |||||||||||| ||||| ||||||||||| |||||||||||||||| ||| ||||
Sbjct 392 ATACTATAGTCCACTACAACTTGACAGAGGCTCTAATGTTCTTATCACATTTTATCGGAG 451
Query 601 ATATCCATCAGCCTTTACATGAAGGTTTTATTGGAGATC-TAGGTGGTAACAAGATAAAA 659
|||| || ||||| ||||||| |||||| | ||||| | |||||| |||| ||||| |
Sbjct 452 ATATTCACCAGCCCTTACATGTTGGTTTTCTGGGAGA-CGAAGGTGGAAACACGATAATA 510
Query 660 GTTCACTGGTACAATCAG-GAAACTAATTTGCACCGTGTGTGGGATGATATGATAATTGA 718
|| | ||||||| || | |||| |||||||||| ||| |||||| | |||||||||||
Sbjct 511 GTCCGCTGGTACCGTC-GCAAAACAAATTTGCACCATGTCTGGGATAACATGATAATTGA 569
Query 719 GTCTGCTC-TAGAAACATACTACAATTCAAGCCTTCCACGCATGATTCATGAACTTCAAG 777
|||||||| || |||||||||||||| ||| ||||||| | | ||||| | |||||||
Sbjct 570 GTCTGCTCTTA-AAACATACTACAATAAAAGTCTTCCACTCTTTATTCAAGCACTTCAAA 628
Query 778 CCAAACTCAAGAACGGCTGGTCAAACGATGTACCTTCATGGGAGTCATGTCAACTTAACC 837
|||| || | | ||||||||||||| ||||| || || ||||||||||||||||||||||
Sbjct 629 CCAATCTTACGCACGGCTGGTCAAATGATGTTCCGTCGTGGGAGTCATGTCAACTTAACC 688
Query 838 AAACGGCCTGCCCAAATCCGTATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTT 897
|||||||||| || |||||||| || ||||||||||| |||| ||||||||||||||||
Sbjct 689 AAACGGCCTGTCCGAATCCGTACGCATCTGAAAGCATAAATCTAGCCTGCAAGTATGCTT 748
Query 898 ACAGGAACGCCACCGCAGGGACTACTTTAGGAGATTACTATTTCGTCTCTCGGTTACCGG 957
| |||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 749 ATAGGAACGCTACCCCAGGGACTACTTTAGGAGATGACTATTTCCTCTCTCGGTTACCCA 808
Query 958 TGGTAGAGAAGAGACTTGCACAAGGCGGAATTCGCTTGGCAGGG-ACTCTTAACCGAATA 1016
| || |||||||||||||||||||| || || |||||||| || ||||| ||||| ||
Sbjct 809 TTGTGGAGAAGAGACTTGCACAAGGTGGGATACGCTTGGC-GGCCACTCTAAACCGTATC 867
Query 1017 TTTTCTGCAAAACGGAAGCTTGCTAGAGCATGA 1049
|||||| | |||| |||| |||| || |||||
Sbjct 868 TTTTCTTCTAAACCTAAGCATGCTGGATCATGA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5