BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21600.1
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492716 jgi|Araly1|492716|fgenesh2_kg.7__2149__AT4G21600.1 1273 0.0
Ahg492718 jgi|Araly1|492718|fgenesh2_kg.7__2151__AT4G21590.1 857 0.0
Ahg492719 jgi|Araly1|492719|fgenesh2_kg.7__2152__AT4G21585.1 850 0.0
> Ahg492716 jgi|Araly1|492716|fgenesh2_kg.7__2149__AT4G21600.1
Length=903
Score = 1273 bits (689), Expect = 0.0
Identities = 821/881 (93%), Gaps = 23/881 (3%)
Strand=Plus/Plus
Query 179 GGATTCTTTGAGGATGATACTATTGCTGCAGTGAAGAAACTTCTGCCTGAATCAGTTGAT 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 GGATACTTTGAGGATGATACTATTGCTGCAGTGAAGAAACTTCTGCCTGAATCTGCTGAT 60
Query 239 GGTGGTGGACTAGCAGATTTTTGCTCATGGCCTGATGAAATTAAAAAACTCTCGCAATGG 298
|||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GGTGAT---CTAGGTGATTTTTGCTCTTGGCCTGATGAAATTAAAAAACTCTCGCAATGG 117
Query 299 CAATGGACTAGCACTTTGCACTATGTTAACACACCTGAATACAGGTGCAACTACGAGTAT 358
|||||||||||| ||||||||||||||||||| ||| || |||| ||||||||||| |||
Sbjct 118 CAATGGACTAGCGCTTTGCACTATGTTAACACTCCTAAAGACAGATGCAACTACGAATAT 177
Query 359 TGCCGGGACTGCCATGACACTCATAAGCAT-AAGGACTGGTGTGTGACAGGAGCGATCTT 417
|| ||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||
Sbjct 178 TGTCGGGACTGCCATGACACTCATAAGCATAAAGG-CTGGTGCGTGACAGGAGCAATCTT 236
Query 418 CAATTACACAAACCAGTTAATGTCTGCTTCTGAAAACTCACAG-A---A--TA-T-A--- 466
|||||||||||| || ||||||||||||||||||||||||||| | | || | |
Sbjct 237 CAATTACACAAAACAATTAATGTCTGCTTCTGAAAACTCACAGAATTTATTTACTAATTT 296
Query 467 GTCCAC-TACAACTTGACAGAGGCTCTCTTGTTCTTGTCACATTATATGGGAGATGTTCA 525
|| | | |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 297 GTGTGCGAAAAACTTGACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATGTTCA 356
Query 526 TCAGCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCAGCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTG 416
Query 586 GTACCATAAC-AAATCAAATTTGCACCATGTCTGGGACAACATGATAATTGACTCTGCTC 644
|||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 417 GTACCATAACGAAA-CAAATTTGCACCATGTCTGGGATAACATGATAATTGACTCTGCTC 475
Query 645 TAGAAACATACTACAATTCAAGCCTTCCACACATGATTCAAGCTCTTCAAGCCAAACTCA 704
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 476 TAGAAACATACTACAATTCAAGCCTTCCACGCATGATTCAAGCCCTTCAAGCCAAACTCA 535
Query 705 AGAACGGCTGGTCGAATGATGTTCCGTCGTGGAAGTCATGTCACTTTCACCAAAAGGCCT 764
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGAACGGCTGGTCAAATGATGTTCCGTCGTGGAAGTCATGTCACTTTCACCAAAAGGCCT 595
Query 765 GTCCAAATCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGTATGCTTACAGGAACG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTCCAAATCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGTATGCTTACAGGAACG 655
Query 825 CTACTCCGGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGA 884
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTACTCCAGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGA 715
Query 885 AGAGACTTGCACAAGGTGGGATTCGCTTGGCAGCTACTCTTAATCGTATCTTTTCTGCAA 944
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 716 AGAGACTTGCACAAGGTGGGATTCGCTTGGCAGCGACTCTTAACCGTATCTTTTCTGCAA 775
Query 945 AACCGAAGCTCGCAGGATTATGAATCTAAGAAAAAGATCCTT-GAGAACCCACGTAACAA 1003
||||||||||||| |||||||||| ||||||||||||| || ||||| |||| ||||||
Sbjct 776 AACCGAAGCTCGCTGGATTATGAAAGTAAGAAAAAGATC-TTAGAGAATCCACTTAACAA 834
Query 1004 CTCCTTTTAAGTGTTTTTTATAACACTGTGAATGGTTGAGT 1044
||| |||||||||||||||| ||||||||||||||||||||
Sbjct 835 CTC-TTTTAAGTGTTTTTTA-AACACTGTGAATGGTTGAGT 873
> Ahg492718 jgi|Araly1|492718|fgenesh2_kg.7__2151__AT4G21590.1
Length=1007
Score = 857 bits (464), Expect = 0.0
Identities = 741/871 (85%), Gaps = 34/871 (4%)
Strand=Plus/Plus
Query 84 TGTGGATTGTGAGTGTACTCGTGCTTACACACCTTGTCCATGGAGCTCTCTGTTGGGGGA 143
|||||||||||||| |||| ||||||||||| || || |||||||||||||||| |||||
Sbjct 26 TGTGGATTGTGAGTATACTAGTGCTTACACAGCTCGTTCATGGAGCTCTCTGTT-GGGGA 84
Query 144 -AGGATGGTCACTACACTGTTTGCAAATTAGCTGAGGGATT-CTTTGAGGATGATACTAT 201
| |||||||||||| |||| |||||| ||||| |||| || |||||||| || ||| |
Sbjct 85 GACGATGGTCACTACGCTGTCTGCAAAATAGCTCAGGG-TTATTTTGAGGAAGAAACTGT 143
Query 202 TGCTGCAGTGAAGAAACTTCTGCCTGAATCAGTTGATGGTGGTGGACTAGCAGATTTTTG 261
| ||| |||||||| |||||||||||||| | ||||| | | ||||||| | ||||
Sbjct 144 AGTTGCTGTGAAGAAGCTTCTGCCTGAATCTGCAAATGGT-G-AG-CTAGCAGCTGTTTG 200
Query 262 CTCATGGCCTGATGAAATTAAAAAA-CTCTCGCAATGGCAATGGACTAGCACTTTGCACT 320
|||||||||||||| | ||||||| ||| ||||||||| ||||||||| ||||||| |
Sbjct 201 TTCATGGCCTGATGAGA-TAAAAAAGCTCCCGCAATGGCGATGGACTAGTGCTTTGCATT 259
Query 321 ATGTTAACACACCTGAATACAGGTGCAACTACGAGTATTGC-CGGGACTGCCATGACACT 379
|| | | |||||||| |||| |||||||| ||||||| | ||||||| | |
Sbjct 260 TTGCTGATACACCTGATTACAAATGCAACTATGAGTATT-CTAGGGACTG---T----C- 310
Query 380 CATAAGCATAAGGACTGGTGTGTGACAGGAGCGATCTTCAATTACACAAACCAGTTAATG 439
| | | || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 311 C-T----A-AA-GACTGGTGTGTGACAGGAGCAATCTTCAATTACACAAACCAACTAATG 363
Query 440 TCTGCTTCTGAAAACTCACAGAATATAGTCCACTACAACTTGACAGAGGCTCTCTTGTTC 499
||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 364 TCTGCTTCTGAAATCTCACAGAGTATAGTCCGCTACAACTTGACAGAGGCTCTCATGTTC 423
Query 500 TTGTCACATTATATGGGAGATGTTCATCAGCCCTTGCAT-ACTGGTTTTCTTGGAGATCT 558
|| |||||||||||||||||| | ||||||| || ||| | |||||| ||||||||||
Sbjct 424 TTATCACATTATATGGGAGATATCCATCAGCTTTTACATGA-AGGTTTTATTGGAGATCT 482
Query 559 AGGTGGTAACACAATAATAGTCAACTGGTACCATAAC-AAATCAAATTTGCACCATGTCT 617
||||||||||| ||||| |||| |||||||| || || ||| | |||||||||| ||| |
Sbjct 483 AGGTGGTAACAAAATAAAAGTCCACTGGTACAATCACGAAA-CTAATTTGCACCGTGTGT 541
Query 618 GGGACAACATGATAATTGACTCTGCTCTAGAAACATACTACAATTCAAGCCTTCCACACA 677
|||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 542 GGGATGACATGATAATTGAGTCTGCTCTAGAAACATACTATAATTCAAGCCTTCCACGCA 601
Query 678 TGATTCAAGCTCTTCAAGCCAAACTCAAGAACGGCTGGTCGAATGATGTTCCGTCGTGGA 737
|||||||||| ||||||||||||||||||||||||||||| |||||||| || || |||
Sbjct 602 TGATTCAAGCCCTTCAAGCCAAACTCAAGAACGGCTGGTCAAATGATGTACCTTCATGGG 661
Query 738 AGTCATGTC-ACTTTCACCAAAAGGCCTGTCCAAATCTGTATGCTTCTGAAAGCATTGAT 796
||||||||| || || |||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 662 AGTCATGTCAAC-TTAACCAAACGGCCTGCCCAAATCCATATGCTTCTGAAAGCATTGAT 720
Query 797 CTCGCCTGCAAGTATGCTTACAGGAACGCTACTC-CGGGGACTACTTTAGGAGATGAGTA 855
|| ||||||||||||||||||||||| || || | | |||||||||||||||||| | ||
Sbjct 721 CTTGCCTGCAAGTATGCTTACAGGAATGCCAC-CGCAGGGACTACTTTAGGAGATTACTA 779
Query 856 TTTCCTTTCTCGGTTACCCGTTGTAGAGAAGAGACTTGCACAAGGTGGGATTCGCTTGGC 915
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TTTTGTCTCTCGGTTACCCGTTGTAGAGAAGAGACTTGCACAAGGCGGGATTCGCTTGGC 839
Query 916 AGCTACTCTTAATCGTATCTTTTCTGCAAAA 946
|| |||||||| || |||| |||| |||||
Sbjct 840 GGCGACTCTTAACCGAATCTATTCTACAAAA 870
> Ahg492719 jgi|Araly1|492719|fgenesh2_kg.7__2152__AT4G21585.1
Length=900
Score = 850 bits (460), Expect = 0.0
Identities = 743/879 (85%), Gaps = 21/879 (2%)
Strand=Plus/Plus
Query 98 GTACTCGTGCTTACACACCTTGTCCATGGAGCTCTCTGTTGGGGGAAGGATGGTCACTAC 157
||||||||||||||||| || || |||||||||| |||||||| || || || || |||
Sbjct 34 GTACTCGTGCTTACACAGCTCATCAATGGAGCTCTGTGTTGGGGAAAAGAAGGCCATTAC 93
Query 158 ACTGTTTGCAAATTAGCTGAGGGATTCTTTG-AGGATGATACTATTGCTGCAGTGAAGAA 216
|| || |||||| |||| ||| | | ||||| | || || ||| | ||||||||||||||
Sbjct 94 ACCGTCTGCAAAATAGCCGAGAGCTACTTTGCA-GAAGAAACTGTAGCTGCAGTGAAGAA 152
Query 217 ACTTCTGCCTGAATCAGTTGATGGTGGTGGACTAGCAGATTTTTGCTCATGGCCTGATGA 276
|||| | |||||||||| |||||||| | |||||| | |||||||||||||||||||
Sbjct 153 ACTTTTACCTGAATCAGCTGATGGTGAT---CTAGCATCTGTTTGCTCATGGCCTGATGA 209
Query 277 AATTAAAAAAC-TCTCGCAATGGCA-ATGGACTAGCACTTTGCACTATGTTAACACACCT 334
|||||| | | | | ||||||| | |||||||||| |||||||||||||| | ||||||
Sbjct 210 GATTAAACACCAT-TGGCAATGG-AGATGGACTAGCCCTTTGCACTATGTTGATACACCT 267
Query 335 GAATACAGGTGCAACTACGAGTATTGCCGGGACTGCCATGACACTCATAAGCAT-AAGGA 393
|| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||| || ||
Sbjct 268 GATTACAGATGCAACTACGAGTATTGTCGGGATTGCCATGATACTCATAAGCATCAA-GA 326
Query 394 CTGGTGTGTGACAGGAGCGATCTTCAATTACAC-AAACCAGTTAATGTCTGCTTCTGAAA 452
| | |||||||| |||||||| || |||||||| | | | || ||||| ||||||||||
Sbjct 327 CCGTTGTGTGACTGGAGCGATTTTTAATTACACTATGCAACTT-ATGTCGGCTTCTGAAA 385
Query 453 ACTCACAGAATATAGTCCACTACAACTTGACAGAGGCTCTCTTGTTCTTGTCACATTATA 512
|||| || | |||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 386 ACTCGCATACTATAGTCCACTACAACTTGACAGAGGCTCTAATGTTCTTATCACATTTTA 445
Query 513 TGGGAGATGTTCATCAGCCCTTGCATACTGGTTTTCTTGGAGATCTA-GGTGGTAACACA 571
| |||||| |||| |||||||| ||| ||||||||| ||||| | | ||||| |||||
Sbjct 446 TCGGAGATATTCACCAGCCCTTACATGTTGGTTTTCTGGGAGA-CGAAGGTGGAAACACG 504
Query 572 ATAATAGTCAACTGGTACCATAACAAATCAAATTTGCACCATGTCTGGGACAACATGATA 631
||||||||| |||||||| | |||| |||||||||||||||||||||| |||||||||
Sbjct 505 ATAATAGTCCGCTGGTACCGTCGCAAAACAAATTTGCACCATGTCTGGGATAACATGATA 564
Query 632 ATTGACTCTGCTCT-AGAAACATACTACAATTCAAGCCTTCCACACATGATTCAAGCTCT 690
||||| |||||||| | |||||||||||||| ||| ||||||| | | |||||||| ||
Sbjct 565 ATTGAGTCTGCTCTTA-AAACATACTACAATAAAAGTCTTCCACTCTTTATTCAAGCACT 623
Query 691 TCAAGCCAAACTCAAGAACGGCTGGTCGAATGATGTTCCGTCGTGGAAGTCATGTCA-CT 749
|||| |||| || | | |||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 624 TCAAACCAATCTTACGCACGGCTGGTCAAATGATGTTCCGTCGTGGGAGTCATGTCAACT 683
Query 750 TTCACCAAAAGGCCTGTCCAAATCTGTATGCTTCTGAAAGCATTGATCTCGCCTGCAAGT 809
| |||||| ||||||||| |||| ||| || ||||||||||| |||| ||||||||||
Sbjct 684 TA-ACCAAACGGCCTGTCCGAATCCGTACGCATCTGAAAGCATAAATCTAGCCTGCAAGT 742
Query 810 ATGCTTACAGGAACGCTACTCCGGGGACTACTTTAGGAGATGAGTATTTCCTTTCTCGGT 869
||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||
Sbjct 743 ATGCTTATAGGAACGCTACCCCAGGGACTACTTTAGGAGATGACTATTTCCTCTCTCGGT 802
Query 870 TACCCGTTGTAGAGAAGAGACTTGCACAAGGTGGGATTCGCTTGGCAGCTACTCTTAATC 929
||||| |||| |||||||||||||||||||||||||| |||||||| || ||||| || |
Sbjct 803 TACCCATTGTGGAGAAGAGACTTGCACAAGGTGGGATACGCTTGGCGGCCACTCTAAACC 862
Query 930 GTATCTTTTCTGCAAAACCGAAGC-TCGCAGGATTATGA 967
||||||||||| | ||||| |||| | || |||| ||||
Sbjct 863 GTATCTTTTCTTCTAAACCTAAGCAT-GCTGGATCATGA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42812035791
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5