BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21605.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492715 jgi|Araly1|492715|fgenesh2_kg.7__2148__AT4G21605.1 848 0.0
Ahg926261 jgi|Araly1|926261|scaffold_201822.1 348 6e-95
Ahg928609 jgi|Araly1|928609|scaffold_301066.1 193 3e-48
Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839 134 2e-30
> Ahg492715 jgi|Araly1|492715|fgenesh2_kg.7__2148__AT4G21605.1
Length=679
Score = 848 bits (459), Expect = 0.0
Identities = 626/701 (89%), Gaps = 33/701 (5%)
Strand=Plus/Plus
Query 486 ATGGATTGTCGTACTCACACATGGTGTGAGGCCCCTAGCATGCAGGTTTCCCGTGTGTTC 545
|||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||
Sbjct 1 ATGGATTGTCGTACTCACACATGGGGTGAGGCCCCAAGAATGCAGGTAGCCCGTGTGTTC 60
Query 546 CAATCTACTTGCGTCCTTGATGGGAAAATATATGTAACAGGAGGCCGCGGAACTCTCGAT 605
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 61 CAATCTACTTGCGTCTTTGATGGAAAAATATATGTAATAGGAGGCCGCGGAACTCTCGAT 120
Query 606 TCAACGAAATGGATGGAGGTTTTTGATACGAAAACCCAAACTTGGGAGTTTTTGCAATTC 665
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TCAACGAAATGGATGGAGGTTTTTGATACAAAAACCCAAACTTGGGAGTTTTTGCAATTC 180
Query 666 CCGAGTGAGGAGAAGATATGC-ACAGGCTATAAGTGTGAGAGCATAGTGTATGAAGGAAC 724
|| || ||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 181 CCTAGCGAGGAGAAGATATGCGA-AGGCTATAAGTACGAGAGCATAGTGTATGAAGGAAC 239
Query 725 TGTCTATGTAAGGTCGT-ATTTTCATAATGTGACTTACAAGCTGCATAAAGGTAGATGGA 783
|||||||||||||| | || ||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CGTCTATGTAAGGTC-TCATGATCAAAATGTGACTTACAAGCTGCATAAAGGTAGATGGA 298
Query 784 TAGCGGCAGACTTAGCGATGAATAATGGATGGCGTTGCTCATCAtttttttGTGTGATAA 843
||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 299 TAGAGGCAGACTTAGCGATGAATAATGGATGGAGTTGCTCATCATCTTTTTGTGTGATAG 358
Query 844 AGAACGTGTTCTACTGTTGCAATAGAAGTGGTAACGGTATGATCGATTGGTATGACTCGG 903
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
Sbjct 359 AGAACGTGTTCTACTGTTGTAATAGAAATGGTAACGGTATGATCGATTGGTATGACTCTG 418
Query 904 AAAAAGGA-TCATGGACAACTATGAAGGGGTTGGAAAGATTGCCTAAAGTTTATGGTAAT 962
||||| | | |||||||||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct 419 AAAAAAAAGT-ATGGACAACTTTGAAGGGGTTGAAAAGATTGCCTAAACTTTATGGGAAT 477
Query 963 GTTAAATTGGCATATTATGGTGGAAAAATGGTGGTGGTGTACGTGGAGTGCTAAGGAGTG 1022
|||||||||||| ||||||||||||||||| ||||| | | ||||| ||| |||
Sbjct 478 GTTAAATTGGCAGATTATGGTGGAAAAATGATGGTG-T-T--GTGGAA----AAG-AGTT 528
Query 1023 GGGTAACGTGA-GA---AAA-ATTTGGTGTGCGGAAATTACGATTGAAAAACGCAAGGAT 1077
||| || | || ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 529 TCGTAT-GTTATGACCCAAAGATTTGGTGTGCGGAAATCACGATTGAAAAACGCAAGGAT 587
Query 1078 GGAGAGATTTGGGGGATACTAGAATGGTTTGACGATGTATATAAAGCCAA-G-G-ATGAG 1134
|||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||
Sbjct 588 GGAGAGATTTGGGGGATACTAGAATGGTTTGACGTTGTATATAAAGCCAATGTGGATGAG 647
Query 1135 CTAGAATATTTAGCTGTAGTGCATGCTGTTGTTACTACCAT 1175
||| | | || || || |||||| |||||||||||||
Sbjct 648 CTACA-T-TT-AG----AG--CATGCTCTTGTTACTACCAT 679
> Ahg926261 jgi|Araly1|926261|scaffold_201822.1
Length=1069
Score = 348 bits (188), Expect = 6e-95
Identities = 496/637 (78%), Gaps = 52/637 (8%)
Strand=Plus/Plus
Query 331 GCCGCAAACCAAATAGCTCAAAAAAGATTTTAATCCCAATTTCATATCCTAA------AT 384
|||| | ||||||||| ||||||| |||||| |||| ||||||| |||||| ||
Sbjct 202 GCCGGAGACCAAATAGTTCAAAAAGGATTTTGGTCCCGATTTCATCTCCTAATTTTCCAT 261
Query 385 CTGCATC-ATGGTCGGATAGTGTAGTGGCTGTTGGTCCTAATATCTACGCTATTGGGGGA 443
||||| | |||||| | ||| | | ||| |||||||||||||||||| | || || |||
Sbjct 262 CTGCA-CGATGGTC-AAAAGT-T-GCGGCGGTTGGTCCTAATATCTACTCCATCGGCGGA 317
Query 444 TTCAGTA-ATAATA-G--AACTAAACCTTCGTCTAGCGTCATGGTCATGGATTGTCGTAC 499
|| | | |||| | | || ||| ||||||||| |||||||| |||||| |||||| |
Sbjct 318 TT-GGAACATAACATGTCAAGTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTC 376
Query 500 TCACACATGGTGTGAGGCCCCTAGCATGCAGGTTTCCCGTGTGTTCCAATCTACTTGCGT 559
||||||||||||||||||||| |||||||| || |||||| ||||| ||| |||||
Sbjct 377 TCACACATGGTGTGAGGCCCCAAGCATGCATGTGGCCCGTGAATTCCATTCTGTTTGCG- 435
Query 560 CC-TTGATGGGAAAATATATGTAACAGGAGGC-CGCGGAACTCTCGATTCAACGAAATGG 617
|| |||||||||||||||||||||| ||| || || || ||| ||||||||||| |||
Sbjct 436 CCTTTGATGGGAAAATATATGTAACGGGA-GCAAACGAAAATCTTGATTCAACGAATTGG 494
Query 618 ATGGAG-GTTTTTGATACGAAA-ACCCAAACTTGGGAGTTTTTGCA-ATTCCCGAGTGAG 674
|||| | ||||||||||| ||| |||| ||||||||||| ||| || | |||| || |
Sbjct 495 ATGG-GTGTTTTTGATAC-AAACACCCGAACTTGGGAGTATTTACAGA-TCCC---TG-G 547
Query 675 -GAGAAGATATGCACAGGCTATAAGTGT-GAGAGCATAGT-GTATGAAGGAA-CTGTCTA 730
|| || |||||| || || | ||| | || ||| || | ||||||||||| || | ||
Sbjct 548 CAAGGAGCTATGCAGAGCCTCTCAGT-TAGAAAGCGTA-TGGTATGAAGGAACCT-TGTA 604
Query 731 TGTAAGGT-CGTATTTTCATAATGTGACTTACAAGCTGCATAAAGGTAGATGGATAGCGG 789
||| |||| || | | ||||| |||||||||||||||||||||||||||| | ||
Sbjct 605 TGTGAGGTCCG-AGAAAAAGAATGTAACTTACAAGCTGCATAAAGGTAGATGGAGAAAGG 663
Query 790 CAGACTTA-GCGATGAATAATGGATGGCGTTGCTCATCAtttttttGTGTGATAAAGAAC 848
||| ||| || |||||| |||||||| || ||||||||| || |||||||||| |||||
Sbjct 664 TAGA-TTATGCTATGAATTATGGATGGGGTCGCTCATCATCTTATTGTGTGATAGAGAAC 722
Query 849 GTGTTCTACTGTTGCAATAGAAGT-GGTAACGGTATGATCGATTGGTATGACTCGGAAAA 907
||||| ||| || || | | |||| | || ||| |||||| |||||| ||||
Sbjct 723 GTGTTTTAC-----CA-TA-ATTTTGGTA-C--TACGATATATTGGTTTGACTCCCAAAA 772
Query 908 AGGATCATGGACAACTATGAAGGGGTTGGAAAGATTG 944
| ||||||||| || | ||||||| |||||||| |||
Sbjct 773 AAGATCATGGAAAATTCTGAAGGGTTTGGAAAGTTTG 809
> Ahg928609 jgi|Araly1|928609|scaffold_301066.1
Length=1002
Score = 193 bits (104), Expect = 3e-48
Identities = 183/221 (83%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 414 GTTGGTCCTAATATCTACGCTATTGGGGGATTCAGTAATAATAGAACTAAACCTTCGTCT 473
|||||| |||||||| | |||||||| ||||| ||| | ||| || || ||||||||
Sbjct 272 GTTGGTTCTAATATCCATGCTATTGGAGGATT-AGT-A-AAT--AA-GAATGCTTCGTCT 325
Query 474 AGCGTCATGGTCATGGATTGTCGTACTCACACATGGTGTGAGGCCCCTAGCATGCAGGTT 533
|||||||||||||||||||||| | ||||||||||| ||||||| || || |||| |
Sbjct 326 AGCGTCATGGTCATGGATTGTCATTCTCACACATGGCGTGAGGCACCAAGTATGCTTATG 385
Query 534 TCCCGTGTGTTCCAATCTACTTGCGTCCTTGATGGGAAAATATATGTAACAGGAGGCCGC 593
|||||| || ||| ||| |||| ||| ||||||||||||||||||||||||||| ||
Sbjct 386 GCCCGTGAGTCCCACTCTGTTTGCATCCATGATGGGAAAATATATGTAACAGGAGGTTGC 445
Query 594 GGAACTCTCGATTCAACGAAATGGATGGAGGTTTTTGATAC 634
|| ||| ||||||||||| ||||||||||||||||||||
Sbjct 446 AAAAATCTTGATTCAACGAATTGGATGGAGGTTTTTGATAC 486
> Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839
Length=3738
Score = 134 bits (72), Expect = 2e-30
Identities = 233/305 (76%), Gaps = 33/305 (11%)
Strand=Plus/Plus
Query 709 TAGTGTATGAAG-GAACTGTCTATGTAAGG-TCGTATTTTCATAATGTGACTTACAAGCT 766
||| ||||| || ||||||||||||| ||| | | | | |||||||||||||||||
Sbjct 3398 TAGAGTATG-AGAGAACTGTCTATGTGAGGTTTG-AGGCGAAGAATGTGACTTACAAGCT 3455
Query 767 GCATAAAGGTAGATGGATAGCGGCAGACTTAGCGAT---GAATAATGGATGGCGT-TGC- 821
|||||||||||||||| | ||||||||| ||||| |||| |||||| | | | |
Sbjct 3456 GCATAAAGGTAGATGGCGAAAGGCAGACTTGGCGATAATGAATCATGGATTGAATCTTCC 3515
Query 822 TCATC-Atttt-tttGTGTGATAAAGAACGTGTTCTACTGTTGCAATAGAAGTGGTAACG 879
| ||| || | ||| ||||||| |||| || |||||| ||| |||| ||| | | |
Sbjct 3516 TTATCTATATCATTT-TGTGATAGAGAATGTTTTCTACCGTTATAATAAAAG-G--A--G 3569
Query 880 GTATGATCGATTGGTATGACTCGGAA-AAAGGATCATGGACAACTATGAAGGGGTTGGAA 938
| || ||||||||||||||| || |||| |||||||| |||| ||||||| ||||||
Sbjct 3570 G-AT---CGATTGGTATGACTCCAAAGAAAG-ATCATGGAAAACTTTGAAGGGTTTGGAA 3624
Query 939 AGATTGCCTAA-AGTTTATG--GT---AAT-GT-T-AAATTGGCATATTATGGTGGAAAA 989
||||| |||| | ||||| || ||| || | |||||||| ||||||||||||||
Sbjct 3625 AGATTACCTAGCACTTTATCACGTTCTAATCGTCTTAAATTGGCG-ATTATGGTGGAAAA 3683
Query 990 ATGGT 994
|||||
Sbjct 3684 ATGGT 3688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5