BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21610.1
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492714 jgi|Araly1|492714|fgenesh2_kg.7__2147__AT4G21610.1 856 0.0
> Ahg492714 jgi|Araly1|492714|fgenesh2_kg.7__2147__AT4G21610.1
Length=597
Score = 856 bits (463), Expect = 0.0
Identities = 558/603 (93%), Gaps = 10/603 (2%)
Strand=Plus/Plus
Query 61 GACATCTTCGCC-GGAGCCGAGACGGAAGGCGTGATGGAAGAGATACAACAACAAACGCA 119
||||| |||||| |||| ||||||||||||||||||||||||||||| | ||| | | |
Sbjct 1 GACATATTCGCCGGGAG-CGAGACGGAAGGCGTGATGGAAGAGATAC-A-AACGCA-GAA 56
Query 120 GAAGGAAGAACAAAAGCACCGTGAAGA-AGAAGAGGAGGAAGAGGAAGGTCCGCCTCCGG 178
||||||||||||||||||||||||| | ||||| || || |||||||| || |||||||
Sbjct 57 GAAGGAAGAACAAAAGCACCGTGAA-ACTGAAGAAGAAGAGGAGGAAGGACCTCCTCCGG 115
Query 179 GATGGGAATCTGCAGTTCTTCCTCCTCCAATCGTCACCATCACCGCCGCCGTAAACCCCA 238
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 116 GATGGGAATCTGCAGTTCTTCCTCCTCCAATCGCCACCGTCACCGCCGCCGTAAACCCCA 175
Query 239 ATCCCACCACCGTAGAAATTCCCGAAAAGGCCCAAATGGTATGTGGATCTTGCAGGCGTT 298
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 176 ATCCCACCGCCGTCGAAATTCCCGAAAAGGCGCAAATGGTATGTGGATCTTGCAGGCGTT 235
Query 299 TGCTTTCTTATCTAAGAGGATCCAAACATGTTAAGTGCTCCTCTTGTCAGACTGTTAATC 358
| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 236 TACTTTCGTATCTAAGAGGATCCAAACATGTCAAGTGCTCGTCTTGTCAAACTGTTAATC 295
Query 359 TCGTTCTTGAAGCTAACCAGGTTGGTCAGGTGAATTGCAACAATTGCAAACTGCTACTGA 418
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 296 TCGTTCTTGAAGCTAACCAGGTTGGTCAGGTGAACTGCAACAATTGTAAACTGCTCCTGA 355
Query 419 TGTATCCTTATGGAGCTCCAGCTGTTAGATGTTCCTCCTGCAATTCTGTCACAGATATCA 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGTATCCTTATGGAGCTCCATCTGTTAGATGTTCCTCCTGCAATTCTGTCACAGATATCA 415
Query 479 GTGAAAACAACAAACGACCTCCATGGTCTGAGCAGCAAGGACCACTCAAAAGTTTAAGCA 538
| || |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 416 GCGAGAACAACAAACGACCTCCATGGTCTGAACAGCAAGGACCACTCAAAAGTATAAGCA 475
Query 539 GTCTCAGGAGAGCAGAGAATTAAACTTGAACCGATTTTTG-TCAATTTTGAACCGGTTTG 597
|| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 GTATCCGGTGAGCAGAGAATTAAACTTGAACCGATTTTTGGTCAATTTTGAACCGGTTTG 535
Query 598 ACGACTAAAAAC-CTTGTAATAATGTCGAAGGATAGATGAAATAAAATCACCATTAATAA 656
| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 536 ATGACTAAAAAAACTTGTAATAATGT-GAAGGATAGATGAAACAAAATCACCATTAGTAA 594
Query 657 TCT 659
|||
Sbjct 595 TCT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24169929378
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5