BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21610.1 Length=659 Score E Sequences producing significant alignments: (Bits) Value Ahg492714 jgi|Araly1|492714|fgenesh2_kg.7__2147__AT4G21610.1 856 0.0 > Ahg492714 jgi|Araly1|492714|fgenesh2_kg.7__2147__AT4G21610.1 Length=597 Score = 856 bits (463), Expect = 0.0 Identities = 558/603 (93%), Gaps = 10/603 (2%) Strand=Plus/Plus Query 61 GACATCTTCGCC-GGAGCCGAGACGGAAGGCGTGATGGAAGAGATACAACAACAAACGCA 119 ||||| |||||| |||| ||||||||||||||||||||||||||||| | ||| | | | Sbjct 1 GACATATTCGCCGGGAG-CGAGACGGAAGGCGTGATGGAAGAGATAC-A-AACGCA-GAA 56 Query 120 GAAGGAAGAACAAAAGCACCGTGAAGA-AGAAGAGGAGGAAGAGGAAGGTCCGCCTCCGG 178 ||||||||||||||||||||||||| | ||||| || || |||||||| || ||||||| Sbjct 57 GAAGGAAGAACAAAAGCACCGTGAA-ACTGAAGAAGAAGAGGAGGAAGGACCTCCTCCGG 115 Query 179 GATGGGAATCTGCAGTTCTTCCTCCTCCAATCGTCACCATCACCGCCGCCGTAAACCCCA 238 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 116 GATGGGAATCTGCAGTTCTTCCTCCTCCAATCGCCACCGTCACCGCCGCCGTAAACCCCA 175 Query 239 ATCCCACCACCGTAGAAATTCCCGAAAAGGCCCAAATGGTATGTGGATCTTGCAGGCGTT 298 |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 176 ATCCCACCGCCGTCGAAATTCCCGAAAAGGCGCAAATGGTATGTGGATCTTGCAGGCGTT 235 Query 299 TGCTTTCTTATCTAAGAGGATCCAAACATGTTAAGTGCTCCTCTTGTCAGACTGTTAATC 358 | ||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||| Sbjct 236 TACTTTCGTATCTAAGAGGATCCAAACATGTCAAGTGCTCGTCTTGTCAAACTGTTAATC 295 Query 359 TCGTTCTTGAAGCTAACCAGGTTGGTCAGGTGAATTGCAACAATTGCAAACTGCTACTGA 418 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct 296 TCGTTCTTGAAGCTAACCAGGTTGGTCAGGTGAACTGCAACAATTGTAAACTGCTCCTGA 355 Query 419 TGTATCCTTATGGAGCTCCAGCTGTTAGATGTTCCTCCTGCAATTCTGTCACAGATATCA 478 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 356 TGTATCCTTATGGAGCTCCATCTGTTAGATGTTCCTCCTGCAATTCTGTCACAGATATCA 415 Query 479 GTGAAAACAACAAACGACCTCCATGGTCTGAGCAGCAAGGACCACTCAAAAGTTTAAGCA 538 | || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 416 GCGAGAACAACAAACGACCTCCATGGTCTGAACAGCAAGGACCACTCAAAAGTATAAGCA 475 Query 539 GTCTCAGGAGAGCAGAGAATTAAACTTGAACCGATTTTTG-TCAATTTTGAACCGGTTTG 597 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 476 GTATCCGGTGAGCAGAGAATTAAACTTGAACCGATTTTTGGTCAATTTTGAACCGGTTTG 535 Query 598 ACGACTAAAAAC-CTTGTAATAATGTCGAAGGATAGATGAAATAAAATCACCATTAATAA 656 | ||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| ||| Sbjct 536 ATGACTAAAAAAACTTGTAATAATGT-GAAGGATAGATGAAACAAAATCACCATTAGTAA 594 Query 657 TCT 659 ||| Sbjct 595 TCT 597 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24169929378 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5