BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21650.1
Length=2439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492710 jgi|Araly1|492710|fgenesh2_kg.7__2143__AT4G21650.1 3594 0.0
Ahg354618 jgi|Araly1|354618|fgenesh1_pg.C_scaffold_7001791 1834 0.0
Ahg354619 jgi|Araly1|354619|fgenesh1_pg.C_scaffold_7001792 1814 0.0
> Ahg492710 jgi|Araly1|492710|fgenesh2_kg.7__2143__AT4G21650.1
Length=2411
Score = 3594 bits (1946), Expect = 0.0
Identities = 2283/2442 (93%), Gaps = 38/2442 (2%)
Strand=Plus/Plus
Query 1 CACACACTTCTCACTTAAGAAAATGAATAACTCTTTACAAAGTTCTAAACTTGTGCTTCT 60
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1 CACACACTTCTCACTTAAGAAAATGGATAACTCTTTACAAAGTGCTAAACTTGTGCTTCT 60
Query 61 ATTGGCTATTGCTTTGGTCCTATTTCTTAACACGGAGCTGGATTTTCTTACAGCTGCTGG 120
| ||||||||||||||||||||||||||||||| |||||| |||||| || | |||||||
Sbjct 61 ACTGGCTATTGCTTTGGTCCTATTTCTTAACACAGAGCTGAATTTTCCTATAACTGCTGG 120
Query 121 AGCCTTAGACAGTGATAGCAAAGTTTATATAGTGTATCTTGGCGAAAGAGAACACGATGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCCTTAGACAGTGATAGCAAAGTTTATATAGTGTATCTTGGCGAAAGAGAACACGATGA 180
Query 181 TCCTGAACTTGTCACAGCTTCTCATCACCAGATGCTTGAATCACTTCTTCAAAGCAAAGA 240
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TCCAGAACTTGTCACAGCTTCTCATCACCAAATGCTTGAATCACTTCTTCAAAGCAAAGA 240
Query 241 AGACGCACAAAACTCCCTGATCTACAGCTACCAACATGGATTCTCTGGTTTCGCGGCGCT 300
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AGACGCACGTAACTCGCTGATCTACAGCTACCAACATGGATTCTCTGGTTTCGCGGCACT 300
Query 301 TCTTACATCATCACAAGCTAAGAAAATTTCAGAGCATCCAGAAGTTATCCATGTTATACC 360
|||||||||||||||||| |||||||||||||| ||||||| ||| |||||| |||||||
Sbjct 301 TCTTACATCATCACAAGCAAAGAAAATTTCAGAACATCCAGCAGTAATCCATTTTATACC 360
Query 361 AAACCGGATTCGGAAACTTAAAACCACAAGAGCTTGGGATCACCTTGGCCTCTCTCCAAT 420
||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||||| |
Sbjct 361 AAACCGGATTCTGAAACTGAAAACCACAAGAACTTGGGATCACCTTGGTCTCTCTCCAGT 420
Query 421 TCCAACTTCTTTTTCTTCATTATCATCTGTAAAAGGTCTTCTTCATGACACCAACTTGGG 480
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACATCTTCTTTTTCTTCATTATCATCTGTAAAAGGTCTTCTTCATGACACCAACTTGGG 480
Query 481 CAGTGAAGCTATCATCGGTGTCATTGATTCCGGGATATGGCCAGAGTCAAAGGCAGTCAA 540
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 481 CAGAGAAGCTATTATCGGTGTCATCGATTCCGGAATATGGCCAGAGTCAAAGGCACTCAA 540
Query 541 CGATCAAGGCCTTGGACCAATACCTAAGCGTTGGAGAGGAAAATGTGAACCTGGAGAACA 600
||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 541 CGATCAAGGGCTTGGACCAATACCTAAGCGTTGGAGAGGAAAATGTGAATCAGGAGAACA 600
Query 601 GTTTAACGCCACAATACATTGCAACAACAAGCTAATAGGAGCTAGGTACTATCTAAACGG 660
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GTTTAACTCCACAATACATTGCAACAACAAGCTAATAGGAGCTAAGTACTATCTAAACGG 660
Query 661 TGTAGTCGCCGCAATTGGAGGAAAATTCAACAGAACAATCATCCAAGATTTCCAATCCAC 720
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 TGTAGTCGCTGCAATTGGAGGAAAATTCAACAGAACAATCATCCAAGATTTGAAATCCAC 720
Query 721 CAGAGATGCAAACGGTCACGGTACACATACAGCCACAATAGCTGGTGGCTCATTTGTCCC 780
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 721 CAGAGATGCAAACGGTCACGGCACACATACAGCCACAATAGCTGGTGGCTCATTCGTTCC 780
Query 781 CAACGTGAGCTACTTTGGTTTAGCCCAAGGTCTTG-TCCGAGGTGGTGCTCCTCGAGCCC 839
||||||||||| || |||| |||||| |||| ||| ||||||||||||||||||| ||||
Sbjct 781 CAACGTGAGCTTCTATGGTCTAGCCCGAGGT-TTGGTCCGAGGTGGTGCTCCTCGGGCCC 839
Query 840 GAATAGCCTCGTACAAGGCGTGTTGGAACGTAATGAGAGATGAAGGAGGAGGAACTGATG 899
| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 840 GCATAGCCTCGTACAAGGCGTATTGGAACGTAATGGGAGATGAAGGAGGAGGAACTGATG 899
Query 900 GAAGATGCACATCTGCTGATATGTGGAAGGCTTTTGATGATGCTATACATGATGGGGTTG 959
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAGATGCACAACTGCTGATATGTGGAAGGCTTTTGATGATGCTATACATGATGGGGTTG 959
Query 960 ATGTTTTGTCGGTTTCTATCGGGGGAGGTATTCCCGAGGATTCGGAAGTCGATAAGCTCG 1019
||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||
Sbjct 960 ATGTTTTGTCGGTTTCTATTGGGGGAGGTATTCCCGAGGATTCCGAGGTTGATAAGCTCG 1019
Query 1020 ATTATATCGCGGCTTTTCACGCGGTGGCTAAAGGGATTACGGTTGTGGCTGCTGCGGGTA 1079
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1020 ATTATATCGCGGCTTTTCATGCGGTGGCTAAAGGGATTACGGTTGTGACTGCTGCGGGTA 1079
Query 1080 ACGAAGGGCCTGGTGCTCACACTGTTGACAATGTTGCTCCTTGGCTTTTGACTGTTGCTG 1139
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 ACGAAGGGCCTGGTGCTCAGACTGTTAACAATGTTGCTCCTTGGCTTTTGACTGTTGCTG 1139
Query 1140 CAACTACTCTTGACCGGTCTTTTCCTACAAAGATCACACTTGGGAATAATCAAACCCTCT 1199
|||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1140 CAACAACTCTTGACCGGTCTTTTCCTACAAAGATTACACTTGGGAATAAACAGACCCTCT 1199
Query 1200 TCGCTGAATCTCTGTTCACTGGACCGGAGATTTCAACCGGTTTAGCTTTCTTGGACTCAG 1259
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTGCTGAATCTCTGTTCACGGGACCGGAGATTTCAACCGGTTTAGCTTTCTTGGACTCAG 1259
Query 1260 ACAGTGATGACACTGTTGATGTGAAGGGGAAAACAGTTCTTGTTTTCGATAGTGCAACTC 1319
|||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1260 ACAGTGATGATAATGTTGATGTGAAGGGGAAAACAGTTCTTGTTTTCGATAGTGCCACTC 1319
Query 1320 CAATTGCAGGGAAAGGTGTAGCAGCAGTGATCCTAGCCCAAAAGCCTGATGATCTTCTTT 1379
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1320 CAATTGCAGGGAAAGGTGTAGCAGCATTAATCCTAGCCCAAAAGCCTGATGATCTTCTTT 1379
Query 1380 CTCGATGCAATGGTGT-ACCATGCATTTTTC-CAGATTACGAGTTTGGAACTGAGATTTT 1437
|||||||||||||| | | |||||||||| | | ||||||||| ||||||||||||||||
Sbjct 1380 CTCGATGCAATGGT-TCAGCATGCATTTT-CGCTGATTACGAGCTTGGAACTGAGATTTT 1437
Query 1438 AAAATACATACGTACCACCAGATCTCCCACGGTGAGAATTACTGCAGCTACTACACTAAC 1497
||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||
Sbjct 1438 AAAATACATACGTACCACCAGATCTCCCACGGTGAGAATTAGTGCGGCTACGACATTAAC 1497
Query 1498 TGGTCAGCCTGCAACAACTAAGGTTGCTGCATTCTCATGTAGAGGGCCTAATTCGGTTTC 1557
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1498 CGGTCAGCCTGCAACGACTAAGGTTGCTGCATTCTCATGTAGAGGGCCTAATTCTGTTTC 1557
Query 1558 ACCAGCCATTCTCAAGCCTGATATAGCAGCTCCGGGTGTGAGCATACTCGCGGCAATAAG 1617
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1558 ACCAGCCATTCTCAAGCCTGATATAGCAGCTCCGGGTGTGAGAATACTCGCGGCAATAAG 1617
Query 1618 TCCGCTTAATCCAGAAGAACAGAACGGATTTGGACTTCTTTCAGGGACATCAATGTCAAC 1677
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1618 TCCGCTTAATCCAGAAGAACAGAACGGATTTGGACTTCTTTCAGGGACATCGATGTCAAC 1677
Query 1678 TCCTGTTGTTTCTGGAATAATAGCTCTCCTAAAATCTCTTCACCCTAAGTGGTCTCCTGC 1737
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1678 TCCTGTTGTTTCTGGAATCATAGCTCTCCTAAAATCTCTACACCCTAATTGGTCTCCTGC 1737
Query 1738 TGCAGTGAGATCAGCTTTGGTCACAACAGCTTGGAGGACAAGTCCATCTGGAGAACCAAT 1797
|||| |||||||||||||||||||||||| | || |||| | |
Sbjct 1738 TGCAATGAGATCAGCTTTGGTCACAACAG-----A--AC----CCAT-T----------T 1775
Query 1798 CTTTGCTGAAGGATCAAACAAGAAGCTTGCAGATCCATTTGACTATGGAGGAGGACTTGT 1857
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 -TT-GCTGAAGGATCAAACAAGAAGCTTGCAGATCCATTTGACTATGGAGGAGGACTTGT 1833
Query 1858 AAA-CCCTGAAAAAGCTGCTAAACCAGGACTTGTCTACGATATGGGGATTGTGGATTACA 1916
||| ||| ||||||||||||||||| || ||||| |||||||||||||| | |||||||
Sbjct 1834 AAATCCC-GAAAAAGCTGCTAAACCCGGTCTTGTATACGATATGGGGATCGACGATTACA 1892
Query 1917 TCAAGTATATGTGTTCTGCGGGTTACAACGACTCTTCAATCTCTCGTGTGCTCGGTAAAA 1976
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 TCAATTATATGTGTTCCGCGGGTTACAACGACTCTTCAATCTCTCGTGTGCTCGGTAAAA 1952
Query 1977 AGACTAATTGCCCAATTCCTAAGCCATCAATGCTTGATATCAACTTACCTTCAATCACAA 2036
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1953 AGACTAAGTGCCCAATTCCTGAGCCATCAATGCTTGATATCAACTTACCTTCAATCACAA 2012
Query 2037 TTCCAAATCTTGAGAAAGAAGTCACACTCACAAGAACTGTAACCAATGTTGGACCCATCA 2096
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 TCCCAAATCTTGAGAAAGAGGTCACACTCACAAGAACTGTAACCAATGTTGGACCCATCA 2072
Query 2097 AGTCAGTCTATAGAGCTGTGATCGAGTCTCCTCTCGGTATAACTCTCACCGTGAACCCAA 2156
|||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2073 AGTCAGTCTACAAAGCCGTGATCGAGCCTCCTCTCGGTATAACTCTCACCGTGAACCCAA 2132
Query 2157 CCACACTCGTGTTT-AAGTCTGCAGCTAAGAGAGTACTCACTTTCTCGGTTAAGGCTAAA 2215
|||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 CCACTCTCGT-TTTCAAATCTGCAGCTAAGAGAGTACTCACTTTCTCGGTTAAGGCTAAA 2191
Query 2216 ACAAGTCACAAAGTCAACACTGGCTACTTCTTTGGAAGCTTAACATGGAGTGATGGTGTT 2275
|| ||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2192 ACTAGTCATAAAGTGAACAGTGGCTACTTCTTTGGAAGCTTAACATGGACTGATGGTGTT 2251
Query 2276 CATGATGTTATAATCCCTGTCTCTGTTAAGACAACGAT-TTCGATGTAATAAAAAGAGCC 2334
|||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||
Sbjct 2252 CATGATGTTATAATCCCTGTCTCTGTTAAGACT-CGTTATTCGATGTAATGAAAAGAGCC 2310
Query 2335 ATATGATGCTCATTGTGTTTGTTCTTATGTAATTTGTTGCAAATCTAAG-TCTAAAATGT 2393
||||||||||||| || |||| ||||||| |||||||||||||||||| ||||| |||
Sbjct 2311 ATATGATGCTCATGGTATTTGCTCTTATGCAATTTGTTGCAAATCTAAACTCTAAG-TGT 2369
Query 2394 CAAATCAAGATTCAAGATCATCATAATAAAAGATCAAATCAC 2435
||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 2370 CAAATCAAGATCCAAGATCATCATAATAAAAAATCAAACCAC 2411
> Ahg354618 jgi|Araly1|354618|fgenesh1_pg.C_scaffold_7001791
Length=2010
Score = 1834 bits (993), Expect = 0.0
Identities = 1353/1520 (89%), Gaps = 52/1520 (3%)
Strand=Plus/Plus
Query 815 GTCCGAGGTGGTGCTCCTCGAGCCCGAATAGCCTCGTACAAGG-CGTGTTGGAACGTAAT 873
|||||||||||| | ||||| ||||| |||||||| ||||||| | |||| | | |||
Sbjct 496 GTCCGAGGTGGTTCCCCTCGGGCCCGCATAGCCTCATACAAGGTC-TGTT-G---G-AAT 549
Query 874 GAGAGATGAAGGAGGAGGAACTGATGGAAGATGCACA-TCTGCTGATATGTGGAAGGCTT 932
| || || ||| | ||| | | || ||||||| | ||||||||||||||||||||
Sbjct 550 G-TAG-TG--GGA-CACGAA--G--GTAA-ATGCACAGT-TGCTGATATGTGGAAGGCTT 598
Query 933 TTGATGATGCTATACATGATGGGGTTGATGTTTTGTCGGTTTCTATCGGGGGAGGTATTC 992
|||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||
Sbjct 599 TTGATGATGCTATACATGATCAGGTAGATGTTTTGTCAGTTTCTATTGGGGGAGGTATTC 658
Query 993 CCGAGGATTCGGAAGTCGATAAGCTC-GATTATATCGCGGCTTTTCACGCGGTGGCTAAA 1051
||||||| || || |||||||||||| | || ||||||||||||||| ||||||||||||
Sbjct 659 CCGAGGAATCCGAGGTCGATAAGCTCAGCTT-TATCGCGGCTTTTCATGCGGTGGCTAAA 717
Query 1052 GGGATTACGGTTGTGGCTGCTGCGGGTAACGAAGGGCCTGGTGCTCACACTGTTGA-CAA 1110
|||||||||||||||||||||||||| |||||||||||||||||||| | |||| | |||
Sbjct 718 GGGATTACGGTTGTGGCTGCTGCGGGGAACGAAGGGCCTGGTGCTCAGAATGTT-ACCAA 776
Query 1111 TGTTGCTCCTTGGCTTTTGACTGTTGCTGCAACTACTCTTGACCGGTCTTTTCCTACAAA 1170
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGCTGCTCCTTGGCTTTTGACTGTTGCTGCAACTACTCTTGACCGGTCTTTTCCTACAAA 836
Query 1171 GATCACACTTGGGAATAATCAAACCCTCTTCGCTGAATCTCTGTTCACTGGACCGGAGAT 1230
|| | |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 837 AATTATACTTGGGAATAAACAAACCCTCTTTGCTGAATCTCTGTTCACGGGACCGGAGAT 896
Query 1231 TTCAACCGGTTTAGCTTTCTTGGACTCAGACAGTGATGACACTGTTGATGTGAAGGGGAA 1290
|||||| |||||||||||||||||||||||||||||||| | |||| | ||||||||||
Sbjct 897 TTCAACGGGTTTAGCTTTCTTGGACTCAGACAGTGATGATAATGTT-A--TGAAGGGGAA 953
Query 1291 AACAGTTCTTGTTTTCGATAGTGC--A----ACTCCAATTGCAGGGAAAGGTGTAGCAGC 1344
|||||||||||||||||||| | | | ||| | ||||||||||||| ||||||||
Sbjct 954 AACAGTTCTTGTTTTCGATACTACTTATCCTACTTTATTTGCAGGGAAAGGCGTAGCAGC 1013
Query 1345 AGTGATCCTAGCCCAAAAGCCTGATGATCTTCTTTCTCGATGCAATGGTG-TACCATGCA 1403
||| ||| |||||||||||||||||||| ||||| |||||| ||| | |||| | ||
Sbjct 1014 AGTAATCTTAGCCCAAAAGCCTGATGATGTTCTTGCTCGATACAA-CCCGATACCGTACA 1072
Query 1404 TTTTTC-CAGATTACGAGTTTGGAACTGAGATTTTAAAATACATACGTACCACCAGATCT 1462
||||| ||||||| ||| | |||||||| |||||| ||||||||||||| |||||||||
Sbjct 1073 -TTTTCACAGATTATGAGATCGGAACTGACATTTTACAATACATACGTACTACCAGATCT 1131
Query 1463 CCCACGGTGAGAATTACTGCAGCTACTACACTAACTGGTCAGCCTGCAACAACTAAGGTT 1522
||||||||||||||| ||| |||| ||| |||| ||||||||||||| |||||||||
Sbjct 1132 CCCACGGTGAGAATTTGTGCTGCTAGGACAATAACCGGTCAGCCTGCAATGACTAAGGTT 1191
Query 1523 GCTGCATTCTCATGTAGAGGGCCTAATTCGGTTTCACCAGCCATTCTC---------AAG 1573
||||||||||||| |||||||||||||||||| ||||||||||||||| |||
Sbjct 1192 GCTGCATTCTCATCTAGAGGGCCTAATTCGGTGTCACCAGCCATTCTCAAGGTTATAAAG 1251
Query 1574 ---CCTGATATAGCAGCTCCGGGTGTGAGCATACTCGCGGCAATAAGTCCGCTTAATCCA 1630
||||||||||||||||| ||||| ||||||||||||||| | ||||||||| ||||
Sbjct 1252 CCACCTGATATAGCAGCTCCAGGTGTTAGCATACTCGCGGCAGTGAGTCCGCTTGATCCT 1311
Query 1631 GAAGAACAGAACGGATTTGGACTTCTTTCAGGGACATCAATGTCAACTCCTGTTGTTTCT 1690
|| | | |||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1312 GATGCGTACAACGGATTTGGACTTCATTCAGGGACATCAATGTCGACTCCTGTTGTTTCT 1371
Query 1691 GGAATAATAGCTCTCCTAAAATCTCTTCACCCTAAGTGGTCTCCTGCTGCAGTGAGATCA 1750
||||| ||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 1372 GGAATCATAGCTCTCCTCAAATCTCTACACCCTAATTGGTCTCCTGCTGCAATGAGATCA 1431
Query 1751 GCTTTGGTCACAACAGCTTGGAGGACAAGTCCATCTGGAGAACCAATCTTTGCTGAAGGA 1810
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1432 GCTTTGGTCACAACAGCTTGGAGGACAAGTCCATCTGGAGAACCTATATTTGCTGAAGGG 1491
Query 1811 TCAAACAAGAAGCTTGCAGATCCATTTGACTATGGAGGAGGACTTGTAAA-CCCTGAAAA 1869
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1492 TCAAACAAGAAGCTTGCAGATCCATTTGACTATGGAGGAGGACTTGTAAATCCC-GAAAA 1550
Query 1870 AGCTGCTAAACCAGGACTTGTCTACGATATGGGGATTGTGGATTACATCAAGTATATGTG 1929
|||||||||||| || ||||| |||||||||||||| | ||||||||||| || |||||
Sbjct 1551 AGCTGCTAAACCCGGTCTTGTATACGATATGGGGATCGACGATTACATCAATTACATGTG 1610
Query 1930 TTCTGCGGGTTACAACGACTCTTCAATCTCTCGTGTGCTCGGTAAAAAGACTAATTGCCC 1989
||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1611 TTCCGCGGGTTATAACGACTCCTCAATCTCTCGTGTGCTCGGTAAAAAGACCAATTGCCC 1670
Query 1990 AATTCCTAAGCCATCAATGCTTGATATCAACTTACCTTCAATCACAATTCCAAATCTTGA 2049
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 AATTCCTGGGCCATCAATTCTTGATATCAACTTACCTTCAATCACAATTCCAAATCTTGA 1730
Query 2050 GAAAGAAGTCACACTCACAAGAACTGTAACCAATGTTGGACCCATCAAGTCAGTCTATAG 2109
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1731 GAAAGAGGTCACACTCACAAGGACTGTAACCAATGTTGGACCCATCAAGTCAGTCTACAA 1790
Query 2110 AGCTGTGATCGAGTCTCCTCTCGGTATAACTCTCACCGTGAACCCAACCACACTCGTGTT 2169
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1791 AGCCGTGATCGAGCCTCCTCTCGGTATAACTCTCACCGTGAACCCAACCACACTCGT-TT 1849
Query 2170 T-AAGTCTGCAGCTAAGAGAGTACTCACTTTCTCGGTTAAGGCTAAAACAAGTCACAAAG 2228
| || |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1850 TCAAATCTGCAGCTAAGAGAGTACTCACTTTCTCGGTCAAGGCTAAAACGAGTCATAAAG 1909
Query 2229 TCAACACTGGCTACTTCTTTGGAAGCTTAACATGGAGTGATGGTGTTCATGATGTTATAA 2288
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1910 TCAACGGTGGCTACTTCTTTGGAAGCTTAACATGGACTGATGGTGTTCATGATGTTACAA 1969
Query 2289 TCCCTGTCTCTGTTAAGACA 2308
||||||||||||||||||||
Sbjct 1970 TCCCTGTCTCTGTTAAGACA 1989
Score = 608 bits (329), Expect = 5e-173
Identities = 436/488 (89%), Gaps = 6/488 (1%)
Strand=Plus/Plus
Query 29 AACTCTTTACAAAGTTCTAAACTTGTGCTTCTATTGGCTATTGCTTTGGTCC-TATTTCT 87
|||||||| | |||||| ||||||||| || | ||||| |||||||||| || |||||||
Sbjct 7 AACTCTTTCCTAAGTTCCAAACTTGTGTTTTTCTTGGCAATTGCTTTGG-CCTTATTTCT 65
Query 88 TAACACGGAGCTGGA-TTTTCTTACAGCTGCTGGAGCCTTAGACAGTGATAGCAAAGTTT 146
||| || ||||| || |||||||||||||| |||||| ||||||| | | ||||||||
Sbjct 66 TAATACAGAGCT-GAGTTTTCTTACAGCTGAACGAGCCTCAGACAGTAACAACAAAGTTT 124
Query 147 ATATAGTGTATCTTGGCGAAAGAGAACACGATGATCCTGAACTTGTCACAGCTTCTCATC 206
||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 125 ATATAGTGTATATTGGCCAAAGGGAACACGATGATCCAGAACTTGTCACAGCTTCTCATC 184
Query 207 ACCAGATGCTTGAATCACTTCTTCAAAGCAAAGAAGACGCACA-AAACTCCCTGATCTAC 265
| || |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||
Sbjct 185 ATCAAATGCTTGAATCACTTCTTCAAAGCAAAGAAGACGCACATAAA-TCACTGGTCTAC 243
Query 266 AGCTACCAACATGGATTCTCTGGTTTCGCGGCGCTTCTTACATCATCACAAGCTAAGAAA 325
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 244 AGCTACCAACATGGATTCTCTGGTTTCGCGGCGCTTCTTACATCTTCGCAAGCAAAGAAA 303
Query 326 ATTTCAGAGCATCCAGAAGTTATCCATGTTATACCAAACCGGATTCGGAAACTTAAAACC 385
|| |||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 304 ATCTCAGAGCATCCATCAGTAATCCATGTTATACCAAACCGGATTCTGAAACTGAAAACC 363
Query 386 ACAAGAGCTTGGGATCACCTTGGCCTCTCTCCAATTCCAACTTCTTTTTCTTCATTATCA 445
|||||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 364 ACAAGAACTTGGGATCATCTTGGCCTCTCTCCAATTCCTACTTCTTTTTCTTCATCGTCA 423
Query 446 TCTGTAAAAGGTCTTCTTCATGACACCAACTTGGGCAGTGAAGCTATCATCGGTGTCATT 505
|||| ||||||||| ||||||||||||||| |||| |||||| |||||||||| ||| ||
Sbjct 424 TCTGCAAAAGGTCTACTTCATGACACCAACATGGGAAGTGAAACTATCATCGGAGTCGTT 483
Query 506 GATTCCGG 513
||| ||||
Sbjct 484 GATACCGG 491
> Ahg354619 jgi|Araly1|354619|fgenesh1_pg.C_scaffold_7001792
Length=1977
Score = 1814 bits (982), Expect = 0.0
Identities = 1272/1408 (90%), Gaps = 36/1408 (3%)
Strand=Plus/Plus
Query 913 TGCTGATATGTGGAAGGCTTTTGATGATGCTATACATGATGGGGTTGATGTTTTGTCGGT 972
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 573 TGCTGATATGTGGAAGGCTTTTGATGATGCTATACATGATCAGGTAGATGTTTTGTCGGT 632
Query 973 TTCTATCGGGGGAGGTATTCCCGAGGATTCGGAAGTCGATAAGC-TCGA-TTATATCGCG 1030
|||||| ||| | ||||||||||||||| || |||||||| | |||| || |||||||
Sbjct 633 TTCTATTGGGAGCCATATTCCCGAGGATTCTGAGGTCGATAA-CGTCGACTT-TATCGCG 690
Query 1031 GCTTTTCACGCGGTGGCTAAAGGGATTACGGTTGTGGCTGCTGCGGGTAACGAAGGGCCT 1090
|||||||| |||||||||||||||||||||||||||| ||| ||||| || || ||||||
Sbjct 691 GCTTTTCATGCGGTGGCTAAAGGGATTACGGTTGTGGTTGCGGCGGGCAATGATGGGCCT 750
Query 1091 GGTGCTCACACT-GTTGACAATGTTGCTCCTTGGCTTTTGACTGTTGCTGCAACTACTCT 1149
|||||||| ||| ||| ||||| |||||| ||||| |||| ||||||||||||||||||
Sbjct 751 GGTGCTCAGACTATTTG-CAATGCTGCTCCATGGCTCTTGAATGTTGCTGCAACTACTCT 809
Query 1150 TGACCGGTCTTTTCCTACAAAGATCACACTTGGGAATAATCAAACCCTCTTCGCTGAATC 1209
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 810 TGACCGGTCTTTTCCTACAAAGATCACACTTGGGAATAACCAAACTTTCTTCGCTGAATC 869
Query 1210 TCTGTTCACTGGACCGGAGATTTCAACCGGTTTAGCTTTCTTGGACTCAGACAGTGATGA 1269
| |||| |||||||||||||||||||| |||||||||||||| | | | |||| |
Sbjct 870 TTTGTTGACTGGACCGGAGATTTCAACGGGTTTAGCTTTCTT-G-----G--A-TGAT-A 919
Query 1270 CACTGTTGATGTGAAGGGGAAAACAGTTCTTGTTTTCGAT--AG-TGCA-AC-TC--CAA 1322
| |||||||||||||||||||||||||||||||||| || || | || | || |||
Sbjct 920 -A-TGTTGATGTGAAGGGGAAAACAGTTCTTGTTTTCCATAAAGCT-CACCCTTCTTCAA 976
Query 1323 TTGCAGGGAAAGGTGTAGCAGCAGTGATCCTAGCCCAAAAGCCTGATGATCTTCTTTCTC 1382
||||||||| ||||||||||||||| ||| ||||||| || |||||||||| ||||||||
Sbjct 977 TTGCAGGGAGAGGTGTAGCAGCAGTCATCTTAGCCCATAACCCTGATGATCGTCTTTCTC 1036
Query 1383 GATGCAATGGTGTACCATGCATTTTTC-CAGATTACGAGTTTGGAACTGAGATTTTAAAA 1441
|| ||| | | | | || ||||| ||||||| ||| |||||||||| |||||| ||
Sbjct 1037 CATACAA---T-T--CTTACA-TTTTCACAGATTATGAGATTGGAACTGACATTTTACAA 1089
Query 1442 TACATACGTACCACCAGATCTCCCACGGTGAGAATTACTGCAGCTACTACACTAACTGGT 1501
||||||||||| ||||||||||| ||||||||||||| ||| ||||| ||||| || |||
Sbjct 1090 TACATACGTACTACCAGATCTCCGACGGTGAGAATTAGTGCTGCTACGACACTGACCGGT 1149
Query 1502 CAGCCTGCAACAACTAAGGTTGCTGCATTCTCATGTAGAGGGCCTAATTCGGTTTCACCA 1561
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1150 CAGCCTGCAACGACTAAGGTTGCTGCATTCTCATCTAGAGGGCCTAATTCGGTTTCACCA 1209
Query 1562 GCCATTCTCAAGCCTGATATAGCAGCTCCGGGTGTGAGCATACTCGCGGCAATAAGTCCG 1621
|||||||||||||||||||| |||||||| ||||| | ||||||||||||| | ||| ||
Sbjct 1210 GCCATTCTCAAGCCTGATATGGCAGCTCCAGGTGTTACCATACTCGCGGCAGTGAGTTCG 1269
Query 1622 CTTAATCCAGAAGAACAGAACGGATTTGGACTTCTTTCAGGGACATCAATGTCAACTCCT 1681
||| |||| | | | ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1270 CTTGATCCTTATGCGTACAACGGATTTGGACTTCTTTCAGGGACATCGATGTCGACTCCT 1329
Query 1682 GTTGTTTCTGGAATAATAGCTCTCCTAAAATCTCTTCACCCTAAGTGGTCTCCTGCTGCA 1741
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1330 GTTGTTTCTGGAATCATAGCTCTCCTAAAATCTCTACACCCTAATTGGTCTCCTGCTGCA 1389
Query 1742 GTGAGATCAGCTTTGGTCACAACAGCTTGGAGGACAAGTCCATCTGGAGAACCAATCTTT 1801
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1390 ATGAGATCAGCTTTGGTCACAACAGCTTGGAGGACAAGTCCATCTGGAGAACCTATATTT 1449
Query 1802 GCTGAAGGATCAAACAAGAAGCTTGCAGATCCATTTGACTATGGAGGAGGACTTGTAAAC 1861
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1450 GCTGAAGGATCAAACAAGAAGCTTGCAGATTCATTTGACTATGGAGGAGGACTTGTAAAC 1509
Query 1862 CCTGAAAAAGCTGCTAAACCAGGACTTGTCTACGATATGGGGATTGTGGATTACATCAAG 1921
|||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1510 CCTGAAAAGGCTGCAAAACCCGGACTTGTCTACGATATGGGGATCAACGATTACATCAAT 1569
Query 1922 TATATGTGTTCTGCGGGTTACAACGACTCTTCAATCTCTCGTGTGCTCGGTAAAAAGACT 1981
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 TACATGTGTTCCGCGGGTTACAACGACTCTTCAATCTCTCGTGTGCTCGGTAAAAAGACT 1629
Query 1982 AATTGCCCAATTCCTAAGCCATCAATGCTTGATATCAACTTACCTTCAATCACAATTCCA 2041
|| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1630 AAGTGCCCAATTCCTGAGCCATCAATGCTTGATATCAACTTACCTTCGATCACAATTCCA 1689
Query 2042 AATCTTGAGAAAGAAGTCACACTCACAAGAACTGTAACCAATGTTGGACCCATCAAGTCA 2101
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 AATCTTGAAAAAGAGGTCACACTCACAAGAACTGTAACCAATGTTGGACCCATCAAGTCA 1749
Query 2102 GTCTATAGAGCTGTGATCGAGTCTCCTCTCGGTATAACTCTCACCGTGAACCCAACCACA 2161
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 GTCTATAAAGCTGTGGTCGAGTCTCCTCTCGGTATAACTCTCACCGTGAACCCAACCACA 1809
Query 2162 CTCGTGTTTAAGTCTGCAGCTAAGAGAGT-ACTCACTTTCTCGGTTAAGGCTAAAACAAG 2220
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 1810 CTCGTGTTTAACTCTGCAGCTAAGAGA-TCACTCACTTTCTCGGTTAAGGCTAAAACGAG 1868
Query 2221 TCACAAAGTCAACACTGGCTACTTCTTTGGAAGCTTAACATGGAGTGATGGTGTTCATGA 2280
||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1869 TCATAAAGTCAACAGTGGCTACTTCTTTGGAAGCTTAACATGGACTGATGGTGTTCATGA 1928
Query 2281 TGTTATAATCCCTGTCTCTGTTAAGACA 2308
||||| ||||||||||||||||||||||
Sbjct 1929 TGTTACAATCCCTGTCTCTGTTAAGACA 1956
Score = 671 bits (363), Expect = 0.0
Identities = 443/482 (92%), Gaps = 4/482 (1%)
Strand=Plus/Plus
Query 29 AACTCTTTACAAAGTTCTAAACTTGTGCTTCTATTGGCTATTGCTTTGGTCCTATTTCTT 88
|||||||||| |||||| ||||||||| |||| ||||| |||||||||||| ||||||||
Sbjct 7 AACTCTTTACTAAGTTCCAAACTTGTGTTTCTCTTGGCAATTGCTTTGGTCTTATTTCTT 66
Query 89 AACACGGAGCTGGA-TTTTCTTACAGCTGCTGGAGCCTTAGACAGTGATAGCAAAGTTTA 147
||||| ||||| || |||||| ||||||| ||||||| ||||||| | |||||||||||
Sbjct 67 AACACAGAGCT-GAGTTTTCTCACAGCTGAAGGAGCCTCAGACAGTAACAGCAAAGTTTA 125
Query 148 TATAGTGTATCTTGGCGAAAGAGAACACGATGATCCTGAACTTGTCACAGCTTCTCATCA 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TATAGTGTATCTTGGCGAAAGAGAACACGATGATCCTGAACTTGTCACAGCTTCTCATCA 185
Query 208 CCAGATGCTTGAATCACTTCTTCAAAGCAAAGAAGACGCACAAAACTCCCTGATCTACAG 267
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 186 TCAAATGCTTGAATCACTTCTTCAAAGCAAAGAAGACGCACATAACTCAATGATCTACAG 245
Query 268 CTACCAACATGGATTCTCTGGTTTCGCGGCGCTTCTTACATCATCACAAGCTAAGAAAAT 327
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 246 CTACCAACATGGATTCTCTGGTTTCGCGGCGCTTCTCACATCTTCACAAGCAAAGAAAAT 305
Query 328 TTCAGAGCATCCAGAAGTTATCCATGTTATACCAAACCGGATTCGGAAACTTAAAACCAC 387
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 306 CTCAGAGCATCCAGAAGTAATCCATGTTATACCAAACCGGATTCTGAAACTGAAAACCAC 365
Query 388 AAGAGCTTGGGATCACCTTGGCCTCTCTCCAATTCCAACTTCTTTTTCTTCATTATCATC 447
|||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 366 AAGAACTTGGGATCATCTTGGCCTCTCTCCAATGCCAACTTCTTTTTCTTCATCATCATC 425
Query 448 TGT-AAAAGGTCTTCTTCATGACACCAACTTGGGCAGTGAAGCTATCATCGGTGTCATTG 506
| | ||||||||| ||||||||||||||| |||| ||||||||||||||||| || |||
Sbjct 426 T-TCAAAAGGTCTACTTCATGACACCAACATGGGAAGTGAAGCTATCATCGGCGTTGTTG 484
Query 507 AT 508
||
Sbjct 485 AT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91911761185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5