BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21680.1
Length=2146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492707 jgi|Araly1|492707|fgenesh2_kg.7__2140__AT4G21680.1 2928 0.0
Ahg492708 jgi|Araly1|492708|fgenesh2_kg.7__2141__AT4G21670.1 60.2 6e-08
> Ahg492707 jgi|Araly1|492707|fgenesh2_kg.7__2140__AT4G21680.1
Length=1979
Score = 2928 bits (1585), Expect = 0.0
Identities = 1815/1927 (94%), Gaps = 11/1927 (1%)
Strand=Plus/Plus
Query 128 AATCATTAGGATCATCAAGATAAGGAATCTTTTTGAGTATATCTCTACACCAAATCGAAT 187
|||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 1 AATCTTTAGGATCATCAAGATAAGGAATCTTTTTGAATATCTCTCTACACGAAATCGAAT 60
Query 188 CTATGGATCAAAAAGTTAGACAGTTTGAGGTTTGCACTCAAGACGGTAGCGTTGATCGTC 247
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 61 CGATGGATCAAAAAGTTAGACAATTTGAGGTTTGCACACAAGACGGTAGCGTTGATCGTC 120
Query 248 ACGGCAATCCAGCTATCCGAGCTAATACCGGCAAATGGCTCACTGCTATTCTCATTCTAG 307
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 121 ACGGCAATCCAGCTATCCGGGCCAATACCGGAAAATGGCTCACTGCTATTCTCATTCTAG 180
Query 308 TGAATCAAGGACTAGCTACGCTTGCGTTCTTCGGTGTAGGAGTGAATTTGGTTCTGTTTC 367
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TGAATCAAGGACTAGCCACGCTTGCGTTCTTCGGTGTTGGAGTGAATTTGGTTCTGTTTC 240
Query 368 TGACTC-GAGTGATGGGACAAGACAATGCAGAAGCGGCTAATAATGTTAGTAAATGGACA 426
|||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TGAC-CAGAGTGATGGGACAAGACAATGCAGAAGCGGCCAATAATGTTAGTAAATGGACT 299
Query 427 GGAACTGTCTATATCTTCTCTTTGCTTGGTGCTTTCCTCAGTGACTCTTATTGGGGACGT 486
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 GGAACTGTTTATATCTTCTCTTTGCTCGGTGCTTTCCTCAGTGACTCTTATTGGGGACGT 359
Query 487 TACAAGACTTGTGCTATCTTTCAAGCAAGTTTCGTTGCAGGGTTGATGATGTTATCTTTA 546
|||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 360 TACAAGACTTGTGCAATCTTTCAAGCAAGTTTCGTTGCAGGATTGGTGATGTTATCTTTA 419
Query 547 TCTACTGGTGCGTTATTGCTTGAACCAAGTGGTTGTGGAGTTGAAGATTCGCCGTGTAAG 606
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 420 TCTACTGGTGCGTTATTGCTTGAACCTAGTGGTTGTGGAGTTGAAGAGTCACCGTGTAAG 479
Query 607 CCTCATTCGACGTTTAAGACGGTTCTGTTTTATCTGTCGGTGTATCTAATCGCGTTAGGG 666
||||| || |||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 480 CCTCACTCCACGTTTAAGACGGTTCTGTTTTATCTATCGGTGTACCTAATCGCCTTAGGG 539
Query 667 TATGGTGGTTATCAGCCGAACATAGCTACTTTTGGAGCTGATCAGTTTGATGCGGAGGAT 726
||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||
Sbjct 540 TATGGTGGTTATCAGCCAAACATAGCGACGTTTGGAGCTGATCAGTTTGATGCAGAGGAT 599
Query 727 TCCGTTGAAGGACACTCGAAAATCGCGTTTTTCAGTTACTTTTACTTGGCTCTGAATCTT 786
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 600 TCCGTTGAAGGACACTCGAAAATAGCATTTTTCAGTTACTTTTACTTAGCTCTGAATCTT 659
Query 787 GGATCGCTCTTCTCAAATACTGTCTTGGGTTACTTTGAGGATCAAGGGGAATGGCCGCTT 846
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 GGATCGCTCTTCTCGAATACTGTCTTGGGTTACTTCGAGGATCAAGGGGAATGGCCGCTA 719
Query 847 GGATTTTGGGCGTCTGCTGGCTCTGCTTTTGCGGGGTTAGTGCTTTTCTTGATTGGCACG 906
|| ||||||||||| || ||||||||||||||||| ||||| |||||||||| |||||
Sbjct 720 GGTTTTTGGGCGTCCGCAGGCTCTGCTTTTGCGGGTTTAGTACTTTTCTTGACCGGCACA 779
Query 907 CCAAAGTACCGACACTTTACGCCTAGAGAGAGTCCTTGGTCTAGATTCTGCCAAGTGTTG 966
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCAAAGTACCGACATTTTACGCCTAGAGAGAGTCCTTGGTCTAGATTCTGCCAAGTGTTG 839
Query 967 GTTGCTGCAACAAGAAAGGCTAAGATTGATGTGCACCATGAAGAGTTGAATCTCTATGAT 1026
||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct 840 GTTGCTGCAACAAGAAAGGCTAAGATTGATGTGGACCATGAGGACTTGAATCTTTATGAT 899
Query 1027 TCTGAGACTCAA-TACACTGGAGATAAGAAGATTCTTCATACCAAAGGCTTCAGATTCTT 1085
|||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 TCTGAGACTCAACGA-ACTGGAGATAAGAAAATTCTTCATACCAAAGGCTTCAGATTCTT 958
Query 1086 GGATAGAGCTGCTATTGTTACACCTGATGATGAGGCTGAGAAAGTAGAGAGCGGATCGAA 1145
|||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||| ||
Sbjct 959 GGATAGAGCTGCGATAGTTACGCCTGACGATGAGGCTGAGAAAGTCGAGAGCGGATCAAA 1018
Query 1146 ATACGATCCATGGAGGCTCTGCTCGGTGACTCAAGTCGAAGAAGTGAAATGTGTATTAAG 1205
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1019 ATACGATTCATGGAGGCTTTGCTCGGTGACTCAAGTCGAAGAAGTGAAATGTGTGTTAAG 1078
Query 1206 ACTCTTACCAATCTGGCTCTGCACCATCCTCTACTCTGTGGTTTTCACCCAAATGGCTTC 1265
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1079 ACTCTTACCAATCTGGCTCTGCACCATCCTCTACTCTGTGGTTTTCACTCAGATGGCTTC 1138
Query 1266 ACTGTTCGTTGTGCAAGGAGCAGCGATGAAGACAAACATCAAAAACTTCCGGATTCCAGC 1325
||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1139 ACTGTTCGTGGTGCAAGGCGCGGCGATGAAGACAAACATTAAAAACTTCCGAATTCCAGC 1198
Query 1326 TTCAAGCATGTCTAGTTTCGACATTCTCAGTGTCGCCTTCTTCATCTTCGCATACAGGCG 1385
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1199 TTCAAGCATGTCTAGTTTCGACATTCTCAGCGTCGCCTTCTTCATCTTTGCTTACAGGCG 1258
Query 1386 GTTTCTTGATCCACTCTTTGCAAGACTTAACAAAACAGAACGCAACAAAGGTCTCACTGA 1445
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1259 GTTTCTTGATCCACTCTTTGCTAGACTTAACAAAACAGAACCCAACAAAGGTCTCACTGA 1318
Query 1446 GCTTCAGAGGATGGGGATTGGGCTTGTGATTGCGATAATGGCGATGATTTCCGCAGGAAT 1505
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1319 GCTTCAGAGGATGGGAATTGGGCTTGTGATTGCGATAATGGCGATGATTTCAGCGGGAAT 1378
Query 1506 CGTAGAGATAC-ACAGACTGAAAAATAAGGAACCGGAAAGTGCTACTTCGATCTCAAGCT 1564
|||||||| | |||||||||||||||| ||||| |||||| |||| ||| |||||||||
Sbjct 1379 TGTAGAGAT-CTACAGACTGAAAAATAAAGAACCAGAAAGTTCTACCTCGGTCTCAAGCT 1437
Query 1565 CCAGCACTTTGAGCATTTTTTGGCAAGTACCTCAGTACATGTTGATAGGTGCATCAGAAG 1624
| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CGAGCTCTTTGAGCATATTCTGGCAAGTACCTCAGTACATGTTGATAGGTGCATCAGAAG 1497
Query 1625 TGTTCATGTACGTTGGTCAACTCGAGTTCTTCAACAGCCAAGCACCAACCGGGCTAAAGA 1684
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1498 TGTTCATGTATGTTGGTCAACTCGAGTTCTTCAACAGCCAAGCACCAACAGGGCTAAAGA 1557
Query 1685 GCTTTGCAAGCGCGCTATGTATGGCTTCAATATCTCTTGGGAACTATGTAAGCAGTTTGT 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GCTTTGCAAGCGCGCTATGTATGGCTTCAATATCTCTTGGGAACTATGTAAGCAGTTTGT 1617
Query 1745 TAGTTTCCATTGTCATGAAGATCTCTACAACAGATGATGTGCATGGCTGGATTCCTGAAA 1804
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1618 TAGTTTCCATTGTCATGAAGATCTCTACAACAGATGACGTGCCTGGCTGGATTCCTGAAA 1677
Query 1805 ATCTCAACAAAGGACACTTGGAGAGATTCTACTTCCTTTTAGCTGGTCTAACCGCTGCTG 1864
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1678 ACCTCAACAAAGGACACTTGGAGAGATTCTACTTCCTTTTAGCTGGTCTAACCGCAGCTG 1737
Query 1865 ATTTCGTGGTTTACTTGATTTGTGCCAAATGGTACAAGTATATTAAATCTGAAGCAAGTT 1924
|||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1738 ATTTCGTGGTTTACCTGATTTGTGCCAAATGGTATAAGTATATCAAGTCTGAAGCAAGTT 1797
Query 1925 TCTCTGAGTCCGTAACTGAAGAGGAGGAAGTCTGAGTCAGGAGCTAGAGAGTTTT-GTGT 1983
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1798 TCTCTGAGTCCGTGACTGACGAGGAGGAAGTCTGAGTCAG-AGCTAGAGAGTTTTTGTGT 1856
Query 1984 TTTATTTTAATGCTGTGAAGCTTTTTACAGTAATTTGTTTAAAGCTGAGCTTGTTCTGTG 2043
||||||| | |||||||||||||||||| |||| ||||| ||||||||||| ||||||||
Sbjct 1857 TTTATTT-A-TGCTGTGAAGCTTTTTAC-GTAAATTGTTCAAAGCTGAGCTAGTTCTGTG 1913
Query 2044 ATATAAA 2050
|||||||
Sbjct 1914 ATATAAA 1920
Score = 86.1 bits (46), Expect = 1e-15
Identities = 53/56 (95%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 2082 TACTCTTGTGCAAAGT-TTAGTTGATGTTTCTCAATAAAGGATAAGTTGATTCCAC 2136
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 1925 TACTCTTGTGCAAAGTCTT-GTTAATGTTTCTCAATAAAGGATAAGTTGATTCCAC 1979
> Ahg492708 jgi|Araly1|492708|fgenesh2_kg.7__2141__AT4G21670.1
Length=3654
Score = 60.2 bits (32), Expect = 6e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Minus
Query 2105 ATGTTTCTCAATAAAGGATAAGTTGATTCCAC 2136
||||||||||||||||||||||||||||||||
Sbjct 3654 ATGTTTCTCAATAAAGGATAAGTTGATTCCAC 3623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80751319400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5