BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21690.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354612 jgi|Araly1|354612|fgenesh1_pg.C_scaffold_7001785 1714 0.0
> Ahg354612 jgi|Araly1|354612|fgenesh1_pg.C_scaffold_7001785
Length=1047
Score = 1714 bits (928), Expect = 0.0
Identities = 1010/1050 (96%), Gaps = 3/1050 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTCTGTCACACAGCTATTCAAGAACAACCCCGTGAACCGTGACCGGATCATCCCA 60
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCTCCGTCTCACAGCTATTCAAGAACAACCCCGTGAACCGTGACCGGATCATCCCA 60
Query 61 CTAGATTTCACCAACACCAAAACCCTACCCGACTCCCACGTCTGGTCCAAACCCGAACCC 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 CTAGATTTCACCAACACCAAAACCCTACCCGACTCTCACGTTTGGTCCAAACCCGAACCC 120
Query 121 GAAACCACGAGCGGACCCATTCCCGTCATCAGCTTGTCCAACCCGGAGGAACATGGGCTA 180
|||||||||| | ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 121 GAAACCACGACCCGACCCATTCCCGTCATCAGCTTGTCTAACCC---GGAACATGGGCTA 177
Query 181 CTACGACAAGCCTGTGAGGAATGGGGTGTGTTTCATATCACAGACCATGGAGTCTCACAC 240
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 CTCCGACAAGCCTGTGAGGAATGGGGTGTGTTTCATATCACAGACCATGGGGTCTCACAC 237
Query 241 TCGTTACTCCATAACGTTGATTGCCAAATGAAGAGGCTTTTCTCTTTACCCATGCATCGT 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCGTTACTCCATAACGTTGAGTGCCAAATGAAGAGGCTTTTCTCTTTACCCATGCATCGT 297
Query 301 AAGATCTTAGCCGTTCGATCTCCCGACGAGTCCACTGGTTACGGTGTGGTTCGGATCTCC 360
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGATCCTAGCCGTCCGATCTCCCGACGAGTCCACTGGTTACGGTGTGGTTCGGATCTCC 357
Query 361 ATGTTCTATGATAAGCTCATGTGGTCTGAAGGATTCTCCGTCATGGGTTCCTCTCTTCGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGTTCTATGATAAGCTCATGTGGTCTGAAGGATTCTCCGTCATGGGTTCCTCTCTTCGA 417
Query 421 CGTCACGCTACACTCTTATGGCCCGATGATCATGCCGAGTTCTGCAATGTGATGGAAGAG 480
|||||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 418 CGTCACGCTACACTATTATGGCCGGACGATCACGCCGAGTTCTGCAATGTAATGGAAGAG 477
Query 481 TATCAGAAGGCAATGGATGATTTAAGTCATAGACTAATAAGCATGTTGATGGGCTCGTTA 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 TATCAGAAGGCAATGGATGATTTGAGTCATAGACTAATAAGCATGTTGATGGGCTCGTTA 537
Query 541 GGGCTAACACATGAAGATTTGGGATGGCTTGTACCAGACAAAACTGGTTCAGGAACTGAC 600
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 538 AGGCTAACACGTGAAGATTTGGGATGGCTTGTACCGGACAAAACTGGTTCAGGAACCGAC 597
Query 601 TCGATCCAATCCTTTCTGCAGTTGAACTCCTACCCGGTTTGCCCTGACCCTCATCTAGCT 660
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCCATCCAATCCTTTCTGCAGTTGAACTCCTACCCGGTTTGCCCTGACCCTCATCTAGCC 657
Query 661 ATGGGTTTAGCCCCTCACACCGACTCCTCCCTACTTACCATTCTCTACCAAGGCAATATT 720
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 ATGGGCTTAGCCCCTCACACCGACTCCTCCCTACTCACCATTCTCTACCAAGGCAATATT 717
Query 721 CCAGGTCTAGAGATTGAAAGTCCACAAGAAGAAGGGTCGAGATGGATTGGAGTAGAGCCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CCAGGTCTAGAGATTGAAAGTCCACAAGAAGAAGGGTCGAGATGGATTGGAGTAGAGCCA 777
Query 781 ATAGAAGGTAGTCTCGTTGTTATAATGGGAGATTTATCTCATATCATATCCAATGGACAG 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 ATAGAAGGTAGTCTCGTTGTTATAATGGGAGATTTATCTCATATCATATCTAATGGACAG 837
Query 841 TTCAGAAGTACAATGCACCGTGCGGTGGTGAACAAGACGCACCACCGTGTCTCAGCCGCT 900
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTCAGAAGCACGATGCACCGTGCGGTGGTGAACAAGACGCACCACCGTGTCTCAGCCGCT 897
Query 901 TATTTCGCTGGCCCTCCCAAGAACCTTCAGATCGGACCGTTGACCAGCGACAAGAACCAT 960
|||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 898 TATTTCGCCGGCCCACCCAAGAACCTTCAAATTGGACCATTGACCAGCGACAAGAACCAT 957
Query 961 CCTCCTATTTACAGGCGTTTGATATGGGAAGAGTACCTTGCAGCCAAAGCAACACACTTT 1020
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCTCCTATTTACCGTCGTTTGATATGGGAAGAGTACCTTGCAGCCAAAGCAACACACTTT 1017
Query 1021 AACAAAGCCTTGACTTTGTTCCGTTGCTGA 1050
||||||||||||| ||||||||||||||||
Sbjct 1018 AACAAAGCCTTGAATTTGTTCCGTTGCTGA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5