BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21700.1
Length=2889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354611 jgi|Araly1|354611|fgenesh1_pg.C_scaffold_7001784 4303 0.0
Ahg897300 jgi|Araly1|897300|Al_scaffold_0005_1266 1615 0.0
Ahg348782 jgi|Araly1|348782|fgenesh1_pg.C_scaffold_5002174 1050 0.0
> Ahg354611 jgi|Araly1|354611|fgenesh1_pg.C_scaffold_7001784
Length=2910
Score = 4303 bits (2330), Expect = 0.0
Identities = 2691/2868 (94%), Gaps = 14/2868 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACTTTTTGGCCATCC-TCTTCATCTTCAAACCACCCTTCAATATTCCTTTATTT 59
||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||||
Sbjct 1 ATGGCGACTTTTTGGCC-GCCTTCTTCATCTTCAAACTACCCTTCAATACTCCTTTATTT 59
Query 60 ACAATCATACCCTTCTCTCTTCTTCCTCCTCTTTCTTACCACCTCTGCAACTTCACTCAC 119
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 60 ACAATCATACCCTTCTCTCTTCTTCCTCCTCTTTCTGATCACCTCTGCAACTTCACTCAC 119
Query 120 CGTTGCATCCTTAGTGAATCCTCACTCTTTCATAGCTCCACGAATCCCTTATTCCGATCA 179
||||||||||||||||||||||||||| |||||| | ||||| |||||||| ||||||||
Sbjct 120 CGTTGCATCCTTAGTGAATCCTCACTCCTTCATATCCCCACGTATCCCTTACTCCGATCA 179
Query 180 CTGCAACCACATAGTTCCAGAGTCTCCGATCGACCCATCTCCCTCCGCTGTATTCAGCCA 239
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGCAACCACATAGTTCCGGAGTCTCCGATCGACCCATCTCCCTCCGCTGTATTCAGCCG 239
Query 240 CGCATCGCTTGCTTTCGATGTCAGCTTCTTCTCCGGCGGCGACT-TGTTCTTCAATCGGT 298
||| |||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 240 CGCGTCGCTTGCTTTCGATGTCAGCTTCTTCTCCGGCGGCGACTCT-TTCTTCAGTCGGT 298
Query 299 TTCAATCACAGAATGGTGATGTTAAATCAGCTAGATTTAGACCCAAATCAATCCGTAAAA 358
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 299 ATCAATCACAGAATGGTGATGTTAAATCAGCTAGATTCAGACCCATGTCAATCCGCAAAA 358
Query 359 CTTTGGGAGATGGGAAGATTTACAAGGTGGAAGCGAAATTGACTTTACAAATCTCCAAAA 418
| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 359 CGTTGGGTGATGGGAAGATTTACAAGGTTGAAGCCAAATTGACTTTACAAATCTCAAAAA 418
Query 419 CCTCTGCTTCTTCTTCTTATTACGGCGGCGATTTTGGCCAGAAAAAGCTTCAGGTAATGC 478
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 CCTCAGCTTTTTCTTCTTATTACGGCGGCGATTTTGGCCAGAAAAAGCTTCAGGTAACGC 478
Query 479 AGATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTTAC-GGGTTTTGGTCG 537
||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 479 AGATCGACGGACGTAGCTCATGGGGAGGAGCAAGTTTCGATTTTT-CTGGGTTTTGGTCG 537
Query 538 GAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTACT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTACT 597
Query 598 CG-TTTGAAGAT-CTTTGATGCTCGTCTTATGCTTAACTATTCCAAGGAGTCTAATATCT 655
| ||||||| | ||||||||||||| || ||||||||||||||||||| ||||||||||
Sbjct 598 -GATTTGAAG-TCCTTTGATGCTCGTGTTGTGCTTAACTATTCCAAGGACTCTAATATCT 655
Query 656 ATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGGATAGCCTAAGTGAATTTAAAACGG 715
||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 656 ATGGAAGTTTGGTGAAGGGAGTGTTAGAGAGCGTGAATAGCCAAAGTGGTTTTAAAACGA 715
Query 716 TTTTGATTCTTGGTGCAAGAAACACTCCTTTGAACTATGAGTATAAGTTGTTAGAGCAAT 775
||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||
Sbjct 716 TTTCGATTCTTGGTGCTAGAAGTACTCCTTTGAACTATGAGTACAAGTTGTTAGAGCAAT 775
Query 776 CGAAGTTGGATTGTGGGGTAAATGGTGGAGAGAGTTTGTCGTTAGAGAATGTTTTGGGAG 835
|||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 CGAAATTGGATTGCGGGGTAAACAGTGGAGAGAGTTTGTCGTTAGAGAATGTTTTGGGAG 835
Query 836 GAATGTGTAAAGTATTTGAAGGTAGAAGTCATGTGTTTGGTTTGATGTATAGAAATGATT 895
|||||||||| || |||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 836 GAATGTGTAAGGTTTTTGAAGGTAAAAGTAATGTGTTTGGTTTGATGTATAGAACTGATT 895
Query 896 GTGGGGTTGACCATAGTTGTAGTCCTTTTGGAAGTGATGTAGAGTACACACCGGGTTTTA 955
||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 896 GTGGGATTAACCATAGTTGTAGTCCTTTTGTAAGTGATGTAGAGTACACACCGGGTTTTA 955
Query 956 TGTCGATGTTATCGTTTCTGTGTGATGGGGAGAAGATGCGAATGCTTTTGTCATTTAGTA 1015
||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 956 TGTCGCTGTTATCGTTTCTTTGTGACGGGGAGAGGATGCGAATGCTTTTGTCATTTAGTA 1015
Query 1016 ACATGAGCGGTTATAGTAGTTTGTTTCCATTTGATCCGAGAACCAGTTTGGTTGCAGAGG 1075
|||| || ||||||| || |||||||| |||||||||||| |||||||||||||||| |
Sbjct 1016 ACATAAGTAGTTATAGCAGGTTGTTTCCGTTTGATCCGAGAGCCAGTTTGGTTGCAGAAG 1075
Query 1076 GAAGTTGGGATGTAGAGAGGAATAGGTTCTGTGGTGTTGCGTGCAGGATCTTGAATTTCT 1135
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1076 GAACTTGGGATGTAGAGAGGAATAGGTTCTGTGGTGTTGCGTGTAGGATCTTGAATTTCT 1135
Query 1136 CGGATTCTTTGAGTAATGCTGTGGTTGATGATTGTTCCCTGAGGTTAAGTTTGAGATTTC 1195
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1136 CGGATTCTTTGAGTAATGCTGTGGTTGGTGATTGTTCCCTGAGGTTAAGTTTGAGATTTC 1195
Query 1196 CTGCTATCTTGTCGATTAAAAGCATGGCTCCAGTAGTTGGGGAGCTTTGGAGTGCCCAAG 1255
||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 1196 CTGCTATCTTGTCGATTAAAAGCATGGCTCCGGTAGTTGGGGAGCTTTGGAGTGTCAAAA 1255
Query 1256 CAGAGAGTGATCCAAGCTATTTCAGAAGAATTGAGTTCTCGAGCCTAAACGATCAACTGT 1315
||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 1256 CAGAGAGTGATCCAAGCTATTTCAGAAGAATCGAGTTCTCGAGCTTAAACGATCCACTGT 1315
Query 1316 GGCGTTTCCCGAGTCTGAGATATGAGTATACAGAAAGCGAGAGAGTGGGTAAGTTATGCG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GGCGTTTCCCGAGTCTGAGATATGAGTATACAGAAAGCGAGAGAGTGGGTAAGTTATGCG 1375
Query 1376 GGGCTGGCAAGAGTCGCCCCAAAAGGAAAGGAAACCATTACCCTGATGCTCAAACTTCAG 1435
||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1376 GGGCTGGCAAGCGTCGCCCCAAAAGCAAAGGAAATCATTACCCTGATGCTCAAACTTCAG 1435
Query 1436 ACATGAGATTTGTCATGTCAGTCAAATATTCTGGAGAAGGTAATGTCTTGAGAACTGCCC 1495
|||||||||||||||||||||| ||||||||||||||||||||||| || ||| ||||||
Sbjct 1436 ACATGAGATTTGTCATGTCAGTGAAATATTCTGGAGAAGGTAATGTGTTAAGATCTGCCC 1495
Query 1496 GTGCAAGTCCTTACTTTGTGGGAGACCGTTTGTATCGGGATCTTTTGGTTCGTGGGCAAG 1555
||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1496 GTGCAAGCCCTTACTTTGTGGGAGATCGATTGTATCGCGATCTTTTGGTTCGTGGGCAAG 1555
Query 1556 GGGTTGGGCTAACTGGAATCCCTATGAATGTCAACAGTGTCACTAAAAGCTTTACAAATA 1615
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1556 GGGTTGGGCTAACTGGAATCCCTATGAATGTCAACAGTGTCACCAAAAGCTTCACAAATA 1615
Query 1616 TCACTTATAGAATCCGTTCTTTGAATCCAAATTCCGAATCTCGTGGAGATATCTACGCTG 1675
||||||| |||||||||| ||||||||| |||| |||||||||||||||||||| ||||
Sbjct 1616 TCACTTACAGAATCCGTTTTTTGAATCCGAATTTTGAATCTCGTGGAGATATCTATGCTG 1675
Query 1676 AGGGAACATATGATAGGGATACAGGTGAGCTATGCATGGTAGGATGTCAATCAGTTAGGC 1735
|||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||
Sbjct 1676 AGGGAACATATGATAGGGATACAGGTGACCTGTGTATGGTAGGATGTCAATCTGTTAGGC 1735
Query 1736 TAAAAAACACAGTGGCTATACAAAACGAGACTGTGGATTGCAGTCTTGCAATCAAGATTA 1795
|||| | |||||||| || | |||| ||||| ||||||||||||||||||||||||| |
Sbjct 1736 TAAAGAGCACAGTGGAGATGCGAAACAAGACTTTGGATTGCAGTCTTGCAATCAAGATCA 1795
Query 1796 ACTTTTCTCCAATTGATTCGAGAAGCGATGACCGTTTAAAGGGAACCATCAAAAGCACAC 1855
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1796 AGTTTTCTCCAATTGATTCGAGAAGCGATGACCGTTTAAAGGGAACCATCGAAAGCGCAC 1855
Query 1856 GGGAAAAGACAGATCCGCTTTATGTTGGACGTATGGAGGTTTTGTCGAGGTCCATCTATG 1915
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1856 GAGAAAAGACAGATCCGCTTTATGTTGGACGTATGGAGGTTTTGTCGAGGTCAATCTATG 1915
Query 1916 TTCATCAAGCGAAAGAATCTGTTTGGAGAATGGATTTGGAGGTTGCTATGGTTTTAGTTT 1975
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1916 TTCATCAAGCCAAAGAATCTGTTTGGAGAATGGATATGGAGGTTGCTATGGTTTTAATAT 1975
Query 1976 CCAATACACTTTCATGTCTCTTCTTGGGTATGCAACTCTACCATATGAAGCAACACCAGG 2035
||||||| || |||||| |||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 1976 CCAATACTCTCTCATGTATCTTCTTGGGGATGCAACTCTACCATATGAAGAAACACCAAG 2035
Query 2036 AAGCACTTCC-TTTCATCTCCGTTGCAATGCTGATACTTATTACATTAGGTCACATGATT 2094
|||| ||||| ||| |||||| ||||||||||||||||| | |||||||||||||| |||
Sbjct 2036 AAGCCCTTCCGTTT-ATCTCCATTGCAATGCTGATACTTCTCACATTAGGTCACATAATT 2094
Query 2095 CCTCTGCTGTTAAACTTTGAAGAACTCTTTAAAGGCAGCCATAACCAGCGAAA-CTTGTT 2153
||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||
Sbjct 2095 CCTCTGCTGTTAAACTTTGAAGAACTCTTTAAAAGCAGCCAAAACCAGC-AAAGCTTGTT 2153
Query 2154 CTTTGAGAACGACAGATGGCTCGAAGCCAAGGAAATTGTGGTGCGGATAGTGACACTGAT 2213
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2154 CTTTGAGAACGACAGATGGCTTGAAGCCAAGGAAATTGTGGTGCGGATAGTGACGCTGAT 2213
Query 2214 AGCTTTCTTACTCGAGTGCCGTCTTCTCCAACTAGCTTGGACTGCTAGAAAAACCGGAGA 2273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2214 AGCTTTCTTACTCGAGTGCCGTCTTCTCCAACTAGCTTGGACTGCTAGAAAAACCGAAGA 2273
Query 2274 CCATCATCACCGTGAAGATGTGTGGAAAGCAGAGAAGAAGGTTTCTTATGTGTGTTTACC 2333
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2274 CCATCATCACCGTGAAGAGGTGTGGAATGCAGAAAAGAAGGTTTCTTATGTGTGTTTACC 2333
Query 2334 TCTCTACATCACCGGTGGATTGATTGCTTGGTTAGTGAACCGTAATAGAACTCCTAAAAG 2393
|||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 2334 TCTCTACATCACTGGTGGATTGCTTGCTTGGTTAGTGAACCATAATAGAACTCCTAAAAG 2393
Query 2394 AATAGTATACATAGGAAAACCGCAAGCTCGGAATCTCTTATACCGTCCAGTGAACCTGAA 2453
|||||||| |||||| |||||||| || || |||||||| ||||||||||||||||||||
Sbjct 2394 AATAGTATTCATAGGGAAACCGCACGCACGAAATCTCTTGTACCGTCCAGTGAACCTGAA 2453
Query 2454 ACGCTCATTTCAACGTCCTCCTTTGTGGAAAGATCTAAAATCTTATGGAGGTTTGATGCT 2513
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2454 ACGCTCATTTCAACGTCCTCCTCTGTGGAAAGATCTGAAATCTTATGGAGGTTTGATGCT 2513
Query 2514 TGACGCATTCCTCCTTCCTCAAATACTCTTCAACGGTTTCAGCAACTCGGACTTGAAGCC 2573
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 2514 TGACGCATTCCTCCTTCCTCAAATACTCTTCAACGGATTCAGCAACTCAGACTTAAAGCC 2573
Query 2574 TCTTGCTGCTTTGTTTTACGTTGGAAACAGCTTTGTTCGATTGCTTCCTCATGCTTATGA 2633
||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2574 TCTTGCTGCTTCGTTTTACGGTGGAAACAGCTTCGTTCGATTGCTTCCTCATGCTTATGA 2633
Query 2634 TCTGTATAGAAGTCACAGCTACGGGAAGATTCTTGATTGGTCATTCATTTATGCAAACCA 2693
|||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2634 TCTGTACAGAAGTCGCAGCTACGGGAAGAGTCTTGATTGGTCATTCATTTATGCAAACCA 2693
Query 2694 CAAAATGGATTATTACTCTACGGCATGGGATATTATTATCCTCTGCATCGGTTTCCTCTT 2753
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2694 CAAAATGGATTATTACTCTACGGCATGGGATATCATTATCCTCTGCATCGGTTTCCTCTT 2753
Query 2754 TGCGTTTCTGATTTTCTTGCAGCAGAGATTCGGTGGTCGTTGTTTCATTCCAAAGAGATT 2813
| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2754 CGTGTTTCTGATTTTCTTGCAGCAGACATTCGGTGGTCGTTGTTTCATCCCAAAGAGATT 2813
Query 2814 CAGAGAATATGTGGGATATGAGAAAGTTGTAGAGCTTCAACAAGCTGG 2861
| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 CCGAGAAAATGTGGGATATGAGAAAGTTGTAGAGCTTCAACAAGCTGG 2861
> Ahg897300 jgi|Araly1|897300|Al_scaffold_0005_1266
Length=1434
Score = 1615 bits (874), Expect = 0.0
Identities = 1078/1172 (92%), Gaps = 31/1172 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACTTTTTGGCCATCC-TCTTCATCTTCAAACCACCCTTCAATATTCCTTTATTT 59
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCGACTTTTTGGCCA-CCTTCTTCATCTTCAAACTACCCTTCAATATTCCTTTATTT 59
Query 60 ACAATCATACCCTTCTCTCTTCTTCCTCCTCTTTCTTACCACCTCTGCAACTTCACTCAC 119
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 ACAATCATACCCTTTTCTCTTCTTCCTCCTCTTTCTGACCACCTCTGCAACTTCACTCAC 119
Query 120 CGTTGCATCCTTAGTGAATCCTCACTCTTTCATAGCTCCACGAATCCCTTATTCCGATCA 179
| ||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||
Sbjct 120 CCTTGCATCCTTAGTGAATCCTCACTCTTACATATCCCCACGAGTCCCTTATTCCGATCA 179
Query 180 CTGCAACCACATAGTTCCAGAGTCTCCGATCGACCCATCTCCCTCCGCTGTATTCAGCCA 239
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CTGCAACCACATAGTTCCAGAGTCTCCGATCGACCCATCTCCCTCCGCCGTATTCAGCCG 239
Query 240 CGCATCGCTTGCTTTCGATGTCAGCTTCTTCTCCGGCGGCGACT-TGTTCTTCAATCGGT 298
|| ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 240 TGCGTCGCTTGCTTTCGATTTCAGCTTCTTCTCCGGCGGCGACTCT-TTCTTCAATCGGT 298
Query 299 TTCAATCACAGAATGGTGATGTTAAATCAGCTAGATTTAGACCCAAATCAATCCGTAAAA 358
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 299 ATCAATCACAGAATGGTGATGTTAAATCAGCTAGATTCAGACCCATGTCAATCCGCAAAA 358
Query 359 CTTTGGGAGATGGGAAGATTTACAAGGTGGAAG-CGAAATTGACTTTACAAATCTCCAAA 417
| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| |||
Sbjct 359 CGTTGGGTGATGGGAAGATTTACAAGGTTGAAGAC-AAATTGACTTTACAAATCTCAAAA 417
Query 418 ACCTCTGCTTCTTCTTCTTATTACGGCGGCGATTTTGGCCAGAAAAAGCTTCAGGTAATG 477
||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 418 ACCTCAGCTTTTTCTTCTTATTACGGCGGCGATTTTGGCAAGAAAAAGCTTCAGGTAACG 477
Query 478 CAGATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTTAC-GGGTTTTGGTC 536
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 478 CATATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTT-CTGGGTTTTGGTC 536
Query 537 GGAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTAC 596
Query 597 TCG-TTTGAAGATC-TTTGATGCTCGTCTTATGCTTAACTATTCCAAGGAGTCTAATATC 654
| | ||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 597 T-GATTTGAAG-TCCTTTGATGCTCGTCTTATGCTTAATTATTCCAATGAGTCTAATATC 654
Query 655 TATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGGATAGCCTA-AGTGAATTTAAAAC 713
|||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||
Sbjct 655 TATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGAATAGCC-AGAGTGAGTTTAAAAC 713
Query 714 GGTTTTGATTCTTGGTGCAAGAAACACTCCTTTGAACTATGAGTATAAGTTGTTAGAGCA 773
| | | ||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 714 GATCTCGATTCTTGGTGCAAGAAACACTCCTTTGAACTATGAGTACAAGTTTTTGGAGCA 773
Query 774 ATCGAAGTTGGATTGTGGGGTAAATGGTGGAGAGAGTTTGTCGTTAGAGAATGTTTTGGG 833
|||||| | ||||| | |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 774 ATCGAAATCAGATTGCGAGGTAAACAGTGGAGAGAGTTTGTCGTTAGAGAATGTTTTTGG 833
Query 834 AGGAATGTGTAAAGTATTTGAAGGTAGA-AGTCATGTGTTTGGTTTGATGTATAGAAATG 892
|||||||||||| || |||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 834 AGGAATGTGTAAGGTTTTTGAAGGTA-ATAGTCATGTGTTTGGTTTGATGTATAGAACTG 892
Query 893 ATTGTGGGGTTGACCATAGTTGTAGTCCTTTTGGAAGTGATGTAGAGTACACACCGGGTT 952
||||||| || ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 893 GTTGTGGGATTAACCATAGTTATAGTCCTTTTGGAAGTGATGTAGAGTACACACCAGGTT 952
Query 953 TTATGTCGATGTTATCGTTTCTGTGTGATGGGGAGAAGATGCGAATGCTTTTGTCATTTA 1012
|||||||||||||||||||||| ||||| ||||| | | | ||||||||
Sbjct 953 TTATGTCGATGTTATCGTTTCTTTGTGACGGGGA-----T-----T--T---GTCATTTA 997
Query 1013 GTAACATGAGCGGTTATAGTAGTTTGTTTCCATTTGATCCGAGAACCAGTTTGGTTGCAG 1072
||||||| || ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 998 GTAACATAAGTAGTTATAGCAGGTTGTTTCCATTTGATCCGAGAACCAGTTTGGTTGCAG 1057
Query 1073 AGGGAAGTTGGGATGTAGAGAGGAATAGGTTCTGTGGTGTTGCGTGCAGGATCTTGAATT 1132
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AGGGAACTTGGGATGTGGAGAGGAATAGGTTCTGTGGTGTTGCGTGCAGGATCTTGAATT 1117
Query 1133 TCTCGGATTCTTTGAGTAATGCTGTGGTTGAT 1164
|||||||||||||||||||||||||| |||||
Sbjct 1118 TCTCGGATTCTTTGAGTAATGCTGTGTTTGAT 1149
> Ahg348782 jgi|Araly1|348782|fgenesh1_pg.C_scaffold_5002174
Length=975
Score = 1050 bits (568), Expect = 0.0
Identities = 660/703 (94%), Gaps = 12/703 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTTTTTGGCCATCC-TCTTCATCTTCAAACCACCCTTCAATATTCCTTTATTT 59
||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCGACTTTTTGGCC-GCCTTCTTCATCTTCAAACTACCCTTCAATATTCCTTTATTT 59
Query 60 ACAATCATACCCTTCTCTCTTCTTCCTCCTCTTTCTTACCACCTCTGCAACTTCACTCAC 119
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 ACAATCATACCCTTTTCTCTTCTTCCTCCTCTTTCTGACCACCTCTGCAACTTCACTCAC 119
Query 120 CGTTGCATCCTTAGTGAATCCTCACTCTTTCATAGCTCCACGAATCCCTTATTCCGATCA 179
| ||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||
Sbjct 120 CCTTGCATCCTTAGTGAATCCTCACTCTTACATATCCCCACGAGTCCCTTATTCCGATCA 179
Query 180 CTGCAACCACATAGTTCCAGAGTCTCCGATCGACCCATCTCCCTCCGCTGTATTCAGCCA 239
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CTGCAACCACATAGTTCCGGAGTCTCCGATCGACCCATCTCCCTCCGCCGTATTCAGCCG 239
Query 240 CGCATCGCTTGCTTTCGATGTCAGCTTCTTCTCCGGCGGCGACT-TGTTCTTCAATCGGT 298
|| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 240 TGCGTCGCTTGCTTTCGATGTCAGCTTCTTCTCCGGCGGCGACTCT-TTCTTCAATCGGT 298
Query 299 TTCAATCACAGAATGGTGATGTTAAATCAGCTAGATTTAGACCCAAATCAATCCGTAAAA 358
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 299 ATCAATCACAGAATGGTGATGTTAAATCAGCTAGATTCAGACCCATGTCAATCCGCAAAA 358
Query 359 CTTTGGGAGATGGGAAGATTTACAAGGTGGAAG-CGAAATTGACTTTACAAATCTCCAAA 417
| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| |||
Sbjct 359 CGTTGGGTGATGGGAAGATTTACAAGGTTGAAGAC-AAATTGACTTTACAAATCTCAAAA 417
Query 418 ACCTCTGCTTCTTCTTCTTATTACGGCGGCGATTTTGGCCAGAAAAAGCTTCAGGTAATG 477
||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 418 ACCTCAGCTTTTTCTTCTTATTACGGCGGCGATTTTGGCAAGAAAAAGCTTCAGGTAACG 477
Query 478 CAGATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTTAC-GGGTTTTGGTC 536
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 478 CATATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTT-CTGGGTTTTGGTC 536
Query 537 GGAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTAC 596
Query 597 TCG-TTTGAAGATC-TTTGATGCTCGTCTTATGCTTAACTATTCCAAGGAGTCTAATATC 654
| | ||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 597 T-GATTTGAAG-TCCTTTGATGCTCGTCTTATGCTTAATTATTCCAATGAGTCTAATATC 654
Query 655 TATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGGATAGCC 697
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 655 TATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGAATAGCC 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109052371435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5