BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21705.1 Length=1795 Score E Sequences producing significant alignments: (Bits) Value Ahg492704 jgi|Araly1|492704|fgenesh2_kg.7__2137__AT4G21705.1 2370 0.0 > Ahg492704 jgi|Araly1|492704|fgenesh2_kg.7__2137__AT4G21705.1 Length=1762 Score = 2370 bits (1283), Expect = 0.0 Identities = 1510/1621 (93%), Gaps = 9/1621 (1%) Strand=Plus/Plus Query 1 AATCTTTGACTATCTTCTTCGCCGGAACCGATGAATATACTGAGA-CGAATTCCGGCGAA 59 ||||||| || ||||||||| |||||| |||||||| |||| | | ||| ||||||||| Sbjct 1 AATCTTTCACCATCTTCTTCACCGGAATCGATGAATGTACT-AAAGCGATTTCCGGCGAC 59 Query 60 TTTGATTGCGAGCAGATATTACTACACTAACAGAG-TAAAAAAGACGACACTTTACTCAA 118 |||||||||||||||||| ||||| |||||||||| ||||||| |||||||| ||||| | Sbjct 60 TTTGATTGCGAGCAGATACTACTATACTAACAGAGTTAAAAAA-ACGACACTCTACTCCA 118 Query 119 AAATCAGTCCTTTAGGAGACCCAAAATCAAGTGTTTACCCAGAACTCCAAAACTGGGTTC 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 AAATCAGTCCTTTAGGAGACCCAAAATCAAGTGTTTACCCAGAACTCCAAAACTGGGTTC 178 Query 179 AATGCGGTAAAAAAGTCTCTGTTGCTGAACTTATTCGCATCGTTCACGATCTTCGTAGAC 238 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 179 AATGCGGTAAAAAAGTCTCTGTTGCTGAACTTATTCGCATCGTTCATGATCTTCGTAGAC 238 Query 239 GCAAACGCTTCCTCCACGCTCTCGAGGTTTCGAAATGGATGAATGAGACTGGTGTATGTG 298 ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 239 GCAAACGGTTCCTCCATGCTCTCGAGGTATCGAAATGGATGAATGAGACTGGTGTATGTG 298 Query 299 TGTTCTCTCCGACAGAACACGCGGTTCATCTTGATCTTATTGGTAGAGTTTATGGATTTG 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 299 TGTTCTCTCCGACAGAACACGCGGTTCATCTTGATCTTATTGGTAGAGTTTATGGATTCG 358 Query 359 TCACTGCAGAAGAGTATTTTGAGAATCTTAAGGAACAGTATAAGAATGATAAGACTTATG 418 | ||||||||||||||||| || || ||||||||||| || || || ||||||||||||| Sbjct 359 TTACTGCAGAAGAGTATTTCGAAAACCTTAAGGAACAATACAAAAACGATAAGACTTATG 418 Query 419 GAGCTCTTTTGAATTGTTACGTTAGGCAACAGAATGTTGAGAAGTCTCTGTTGCATTTTG 478 |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 419 GAGCGCTTTTGAATTGTTACGTTAGGCAACAGAACGTTGAGAAGTCTCTGTTACATTTTC 478 Query 479 AGAAGATGAAGGAGATGGGTTTTGTTACTTCGTCTCTTACTTACAATAACATTATGTGTC 538 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 479 AGAAGATGAAGGAGATGGGTTTTGTTTCTTCGTCTCTTACTTACAATAATATTATGTGTC 538 Query 539 TTTACACGAATATTGGTCAGCACGAGAAAGTTCCTAAG-GTTTTGGAGGAGATGAAGGAA 597 ||||||||||||| |||||||||||||||||||| | |||||||| |||||||||||| Sbjct 539 TTTACACGAATATCGGTCAGCACGAGAAAGTTCCCG-GTGTTTTGGATGAGATGAAGGAA 597 Query 598 GAGAATGTTGCTCCGGATAACTATAGTTATAGGATATGTATTAATGCTTTTGGTGCTATG 657 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 598 GAGAATGTTGCTCCGGATAATTATAGTTTTAGGATATGTATTAATGCTTTTGGTGCTATG 657 Query 658 TATGATCTTGAGAGGATTGGTGGGACCTTGAGAGATATGGAGAGACGACAGGATATTACT 717 | ||||||||||||||||||||||| |||| | |||||||||||||| | |||||||||| Sbjct 658 TCTGATCTTGAGAGGATTGGTGGGATCTTGCGTGATATGGAGAGACGGCCGGATATTACT 717 Query 718 ATGGATTGGAACACTTATGCGGTTGCGGCTAAGTTTTATATTGATGGTGGTGATTGTGAT 777 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 718 ATGGATTGGAACACTTATGCGGTTGCTGCGAAGTTTTATATCGATGGTGGTGATTGTGAT 777 Query 778 AGAGCGGTTGAGCTTTTGAAGATGTCGGAGAATAGATTGGAGAAGAAAGATGGTGAAGGT 837 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 778 AGAGCGGTTGAGCTTCTGAAAATGTCGGAGAATAGATTGGAGAAGAAAGATGGTGAAGGT 837 Query 838 TACAATCATCTCATTACGCTTTATGCTAGGTTAGGGAAGAAGATAGAGGTTTTAAGGTTA 897 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 838 TACAATCATCTCATTACGCTTTATGCTAGGTTAGGGAATAAGATAGAGGTATTAAGGTTA 897 Query 898 TGGGATTTGGAGAAAGATG-TGTGTAAAAGGAGAATAAATCAGGACTATCTTACTGTGTT 956 ||||| ||||||||||| | | ||||||||| |||||||||||||||||||||||||||| Sbjct 898 TGGGAATTGGAGAAAGAAGCT-TGTAAAAGGCGAATAAATCAGGACTATCTTACTGTGTT 956 Query 957 GCAGTCGCTTGTGAAGATTGATGCTTTAGTTGAGGCTGAGGAAGTACTTACGGAATGGAA 1016 ||||||||||||||||||||||| | || || |||||||||||||| || || ||| | Sbjct 957 GCAGTCGCTTGTGAAGATTGATGGTCTAAAAGAAGCTGAGGAAGTACTCACAGAGTGGGA 1016 Query 1017 ATCATCGGGGAACTGTTATGATTTTCGAGTGCCTAACACTGTGATTCGTGGTTACATTGG 1076 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1017 ATCATCGGGAAACTGTTATGATTTTCGAGTGCCTAACACTGTGATTCGTGGATACACTGG 1076 Query 1077 AAAAAGTATGGAGGAGAAGGCAGAAGCGATGCTTGAAGATTTAGCAAGAAGAGGGAAAGC 1136 ||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||| | Sbjct 1077 AAAAAGTATGGAGGAGAAGGCAGAAGCTATGCTTGAGGATCTAGCAAGGAGAGGGAAAAC 1136 Query 1137 TACTACACCAGAATCTTGGGAACTTGTGGCTACTGCTTATGCGGAAAAGGGTACTTTAGA 1196 ||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| Sbjct 1137 TACAACACCAGAATCTTGGGGCCTTGTGGCTACTGCTTATGCGGAAAAAGGTGCTTTAGA 1196 Query 1197 AAATGCTTTCAAGTGTATGAAAACTGCCTTAGGTGTAGAAGTGGGTAGCAGAAAATGGAG 1256 ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| Sbjct 1197 TAATGCTTTCAAGTGTATGAAAACTGCCTTAGGTATAGAAGTGGGGAACAGAAAATGGAG 1256 Query 1257 ACCTGGATTGACGCTGGTTACAAGTGTTTTGAGTTGGGTCGGGGATGAAGGAAGTTTGAA 1316 ||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 1257 ACCTGGATTGAAGCTGGTTACAAGTGTTTTGAGTTGGCTAGGGGATGAAGGAAGTTTGAA 1316 Query 1317 AGAAGTAGAAAGCTTTGTTGCATCTCTTAGGAATTGTATCGGTGTGAACAAACAGATGTA 1376 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1317 AGAAGTAGAAAGCTTCGTTGCATCTCTTAGGAATTGTATCGGTGTAAACAAACAGATGTA 1376 Query 1377 TCATGCTCTTGTCAAGGCTGATATAAGAGAAGGCGGACGTAACATTGATACTCTGTTGCA 1436 ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1377 TCATGCTCTAGTCAAGGCTGATATAAGAGAAGGGGGAAGTAACATTGATACTCTGTTGCA 1436 Query 1437 GCGTATGAAAGATGACAAAATTGAAATCGATGAAGAAACCACAGTGATTCTCAGCACAAG 1496 ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1437 GCGGATGAAAGATGACCAAATTGAAACCGATGAAGAAACCACAGTGATTCTCAGCACAAT 1496 Query 1497 AAGTCCATGCTAAAAGTTTCTTATTCTTCCTTGACGTGATGATACCAAAGATGTCTTCTG 1556 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1497 AAGTCCATGCTAAAAGTTTCTTCTTCTTCCTTGATGTGATGATACCAAAGATGTCTTCTG 1556 Query 1557 AGACAAGGATTTAGGAATGTGATTTCTTAACGGTTGAGTCTTCCTTCAGCAATACTTATT 1616 ||| ||||||||| ||||||||||||| || || |||||||| ||||| ||||| || || Sbjct 1557 AGAAAAGGATTTATGAATGTGATTTCTCAAGGGATGAGTCTTGCTTCAACAATA-TTGTT 1615 Query 1617 A 1617 | Sbjct 1616 A 1616 Score = 237 bits (128), Expect = 2e-61 Identities = 145/153 (95%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 1643 TTGTTAAGAACACTCTCTAGACTCTGTTTTCATAGCATCTATAGAACAGTCTACAAGAGA 1702 ||||||||| || ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1611 TTGTTAAGAGCATTCTCTAGACTCTGTTTTCATAGCATCTATAGAATAATCTACAAGAGA 1670 Query 1703 ATCCTCTGTTCTTTTTTCAAATGCAGTGTACTATCATATTGAATCAGCAGAAGGCAAAGT 1762 || |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1671 ATTCTCTGTTC-TTTTTCAAATGCAGTGTACTCTCATATTGAATCAGCAGAAGGTAAAGT 1729 Query 1763 TAGAGCTTTGGCAATTTGGTTCCATTTTTATTG 1795 ||||||||||||||||||||||||||||||||| Sbjct 1730 TAGAGCTTTGGCAATTTGGTTCCATTTTTATTG 1762 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67381643405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5