BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21705.1
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492704 jgi|Araly1|492704|fgenesh2_kg.7__2137__AT4G21705.1 2370 0.0
> Ahg492704 jgi|Araly1|492704|fgenesh2_kg.7__2137__AT4G21705.1
Length=1762
Score = 2370 bits (1283), Expect = 0.0
Identities = 1510/1621 (93%), Gaps = 9/1621 (1%)
Strand=Plus/Plus
Query 1 AATCTTTGACTATCTTCTTCGCCGGAACCGATGAATATACTGAGA-CGAATTCCGGCGAA 59
||||||| || ||||||||| |||||| |||||||| |||| | | ||| |||||||||
Sbjct 1 AATCTTTCACCATCTTCTTCACCGGAATCGATGAATGTACT-AAAGCGATTTCCGGCGAC 59
Query 60 TTTGATTGCGAGCAGATATTACTACACTAACAGAG-TAAAAAAGACGACACTTTACTCAA 118
|||||||||||||||||| ||||| |||||||||| ||||||| |||||||| ||||| |
Sbjct 60 TTTGATTGCGAGCAGATACTACTATACTAACAGAGTTAAAAAA-ACGACACTCTACTCCA 118
Query 119 AAATCAGTCCTTTAGGAGACCCAAAATCAAGTGTTTACCCAGAACTCCAAAACTGGGTTC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAATCAGTCCTTTAGGAGACCCAAAATCAAGTGTTTACCCAGAACTCCAAAACTGGGTTC 178
Query 179 AATGCGGTAAAAAAGTCTCTGTTGCTGAACTTATTCGCATCGTTCACGATCTTCGTAGAC 238
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 AATGCGGTAAAAAAGTCTCTGTTGCTGAACTTATTCGCATCGTTCATGATCTTCGTAGAC 238
Query 239 GCAAACGCTTCCTCCACGCTCTCGAGGTTTCGAAATGGATGAATGAGACTGGTGTATGTG 298
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 GCAAACGGTTCCTCCATGCTCTCGAGGTATCGAAATGGATGAATGAGACTGGTGTATGTG 298
Query 299 TGTTCTCTCCGACAGAACACGCGGTTCATCTTGATCTTATTGGTAGAGTTTATGGATTTG 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 TGTTCTCTCCGACAGAACACGCGGTTCATCTTGATCTTATTGGTAGAGTTTATGGATTCG 358
Query 359 TCACTGCAGAAGAGTATTTTGAGAATCTTAAGGAACAGTATAAGAATGATAAGACTTATG 418
| ||||||||||||||||| || || ||||||||||| || || || |||||||||||||
Sbjct 359 TTACTGCAGAAGAGTATTTCGAAAACCTTAAGGAACAATACAAAAACGATAAGACTTATG 418
Query 419 GAGCTCTTTTGAATTGTTACGTTAGGCAACAGAATGTTGAGAAGTCTCTGTTGCATTTTG 478
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 419 GAGCGCTTTTGAATTGTTACGTTAGGCAACAGAACGTTGAGAAGTCTCTGTTACATTTTC 478
Query 479 AGAAGATGAAGGAGATGGGTTTTGTTACTTCGTCTCTTACTTACAATAACATTATGTGTC 538
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 479 AGAAGATGAAGGAGATGGGTTTTGTTTCTTCGTCTCTTACTTACAATAATATTATGTGTC 538
Query 539 TTTACACGAATATTGGTCAGCACGAGAAAGTTCCTAAG-GTTTTGGAGGAGATGAAGGAA 597
||||||||||||| |||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 539 TTTACACGAATATCGGTCAGCACGAGAAAGTTCCCG-GTGTTTTGGATGAGATGAAGGAA 597
Query 598 GAGAATGTTGCTCCGGATAACTATAGTTATAGGATATGTATTAATGCTTTTGGTGCTATG 657
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 598 GAGAATGTTGCTCCGGATAATTATAGTTTTAGGATATGTATTAATGCTTTTGGTGCTATG 657
Query 658 TATGATCTTGAGAGGATTGGTGGGACCTTGAGAGATATGGAGAGACGACAGGATATTACT 717
| ||||||||||||||||||||||| |||| | |||||||||||||| | ||||||||||
Sbjct 658 TCTGATCTTGAGAGGATTGGTGGGATCTTGCGTGATATGGAGAGACGGCCGGATATTACT 717
Query 718 ATGGATTGGAACACTTATGCGGTTGCGGCTAAGTTTTATATTGATGGTGGTGATTGTGAT 777
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 718 ATGGATTGGAACACTTATGCGGTTGCTGCGAAGTTTTATATCGATGGTGGTGATTGTGAT 777
Query 778 AGAGCGGTTGAGCTTTTGAAGATGTCGGAGAATAGATTGGAGAAGAAAGATGGTGAAGGT 837
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGAGCGGTTGAGCTTCTGAAAATGTCGGAGAATAGATTGGAGAAGAAAGATGGTGAAGGT 837
Query 838 TACAATCATCTCATTACGCTTTATGCTAGGTTAGGGAAGAAGATAGAGGTTTTAAGGTTA 897
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 838 TACAATCATCTCATTACGCTTTATGCTAGGTTAGGGAATAAGATAGAGGTATTAAGGTTA 897
Query 898 TGGGATTTGGAGAAAGATG-TGTGTAAAAGGAGAATAAATCAGGACTATCTTACTGTGTT 956
||||| ||||||||||| | | ||||||||| ||||||||||||||||||||||||||||
Sbjct 898 TGGGAATTGGAGAAAGAAGCT-TGTAAAAGGCGAATAAATCAGGACTATCTTACTGTGTT 956
Query 957 GCAGTCGCTTGTGAAGATTGATGCTTTAGTTGAGGCTGAGGAAGTACTTACGGAATGGAA 1016
||||||||||||||||||||||| | || || |||||||||||||| || || ||| |
Sbjct 957 GCAGTCGCTTGTGAAGATTGATGGTCTAAAAGAAGCTGAGGAAGTACTCACAGAGTGGGA 1016
Query 1017 ATCATCGGGGAACTGTTATGATTTTCGAGTGCCTAACACTGTGATTCGTGGTTACATTGG 1076
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1017 ATCATCGGGAAACTGTTATGATTTTCGAGTGCCTAACACTGTGATTCGTGGATACACTGG 1076
Query 1077 AAAAAGTATGGAGGAGAAGGCAGAAGCGATGCTTGAAGATTTAGCAAGAAGAGGGAAAGC 1136
||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||| |
Sbjct 1077 AAAAAGTATGGAGGAGAAGGCAGAAGCTATGCTTGAGGATCTAGCAAGGAGAGGGAAAAC 1136
Query 1137 TACTACACCAGAATCTTGGGAACTTGTGGCTACTGCTTATGCGGAAAAGGGTACTTTAGA 1196
||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 1137 TACAACACCAGAATCTTGGGGCCTTGTGGCTACTGCTTATGCGGAAAAAGGTGCTTTAGA 1196
Query 1197 AAATGCTTTCAAGTGTATGAAAACTGCCTTAGGTGTAGAAGTGGGTAGCAGAAAATGGAG 1256
||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 1197 TAATGCTTTCAAGTGTATGAAAACTGCCTTAGGTATAGAAGTGGGGAACAGAAAATGGAG 1256
Query 1257 ACCTGGATTGACGCTGGTTACAAGTGTTTTGAGTTGGGTCGGGGATGAAGGAAGTTTGAA 1316
||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1257 ACCTGGATTGAAGCTGGTTACAAGTGTTTTGAGTTGGCTAGGGGATGAAGGAAGTTTGAA 1316
Query 1317 AGAAGTAGAAAGCTTTGTTGCATCTCTTAGGAATTGTATCGGTGTGAACAAACAGATGTA 1376
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 AGAAGTAGAAAGCTTCGTTGCATCTCTTAGGAATTGTATCGGTGTAAACAAACAGATGTA 1376
Query 1377 TCATGCTCTTGTCAAGGCTGATATAAGAGAAGGCGGACGTAACATTGATACTCTGTTGCA 1436
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1377 TCATGCTCTAGTCAAGGCTGATATAAGAGAAGGGGGAAGTAACATTGATACTCTGTTGCA 1436
Query 1437 GCGTATGAAAGATGACAAAATTGAAATCGATGAAGAAACCACAGTGATTCTCAGCACAAG 1496
||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1437 GCGGATGAAAGATGACCAAATTGAAACCGATGAAGAAACCACAGTGATTCTCAGCACAAT 1496
Query 1497 AAGTCCATGCTAAAAGTTTCTTATTCTTCCTTGACGTGATGATACCAAAGATGTCTTCTG 1556
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1497 AAGTCCATGCTAAAAGTTTCTTCTTCTTCCTTGATGTGATGATACCAAAGATGTCTTCTG 1556
Query 1557 AGACAAGGATTTAGGAATGTGATTTCTTAACGGTTGAGTCTTCCTTCAGCAATACTTATT 1616
||| ||||||||| ||||||||||||| || || |||||||| ||||| ||||| || ||
Sbjct 1557 AGAAAAGGATTTATGAATGTGATTTCTCAAGGGATGAGTCTTGCTTCAACAATA-TTGTT 1615
Query 1617 A 1617
|
Sbjct 1616 A 1616
Score = 237 bits (128), Expect = 2e-61
Identities = 145/153 (95%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 1643 TTGTTAAGAACACTCTCTAGACTCTGTTTTCATAGCATCTATAGAACAGTCTACAAGAGA 1702
||||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1611 TTGTTAAGAGCATTCTCTAGACTCTGTTTTCATAGCATCTATAGAATAATCTACAAGAGA 1670
Query 1703 ATCCTCTGTTCTTTTTTCAAATGCAGTGTACTATCATATTGAATCAGCAGAAGGCAAAGT 1762
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1671 ATTCTCTGTTC-TTTTTCAAATGCAGTGTACTCTCATATTGAATCAGCAGAAGGTAAAGT 1729
Query 1763 TAGAGCTTTGGCAATTTGGTTCCATTTTTATTG 1795
|||||||||||||||||||||||||||||||||
Sbjct 1730 TAGAGCTTTGGCAATTTGGTTCCATTTTTATTG 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67381643405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5