BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21720.1

Length=825
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946002 jgi|Araly1|946002|scaffold_702231.1                        741    0.0  


> Ahg946002 jgi|Araly1|946002|scaffold_702231.1
Length=463

 Score =  741 bits (401),  Expect = 0.0
 Identities = 430/444 (97%), Gaps = 2/444 (0%)
 Strand=Plus/Plus

Query  69   gagaTGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGAATAAGTACTCA  128
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct  21   GAGATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGCATAAGTATTCA  80

Query  129  GCATTTACGCAGCTTCCATGGAGAGTATTCTGCAAAAAGGGATGTGATGCCGATAGTGAC  188
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  81   GCTTTTACGCAGCTTCCATGGAGAGTGTTCTGCAAAAAGGGATGTGATGCCGATAGTGAC  140

Query  189  TCATGGGAAGATTGTGTAGGAGACTGCAGTGAAATTTGCTACAAAGATCCTGTGCTAAAA  248
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  141  TCATGGGAAGATTGTGTAGGAGACTGCAGTGAAATATGCTACAAAGATCCTGTGCTAAAA  200

Query  249  GACAGACCATGGACTGCTGTTATAGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAA  308
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  GACAGACCATGGACTGCAGTTATAGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAA  260

Query  309  TGCTTTCACGCATGTGTAGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTC  368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  261  TGCTTTCACGCATGTGTAGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTC  320

Query  369  AATAAGGTGAAACCAAAGAGACCTccaccaccaccgccaaagccacaaccaccaccacca  428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  AATAAGGTGAAACCAAAGAGACCTCCACCACCACCGCCAAAGCCACAACCACCACCACCA  380

Query  429  ccaccac-GTTCTCAAAAACCAATGCAGCCTCCTACTGAGGATGTTCTTGCAACTTCCGC  487
            ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  381  CCACCACAGT-CTCAAAAACCAATGCAGCCTCCTACTGAGGATGTTCCTGCAACTTCCGC  439

Query  488  TTGACGTATCTCAACCCCCATCAA  511
            || || | || || ||||||||||
Sbjct  440  TTAACATTTCACATCCCCCATCAA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30498333600


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5