BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21740.1
Length=509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946000 jgi|Araly1|946000|scaffold_702229.1 697 0.0
Ahg354556 jgi|Araly1|354556|fgenesh1_pg.C_scaffold_7001729 542 1e-153
> Ahg946000 jgi|Araly1|946000|scaffold_702229.1
Length=517
Score = 697 bits (377), Expect = 0.0
Identities = 447/479 (93%), Gaps = 11/479 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCATCTCTTAAACCGCGTTAGATCTTCCTGGTCGTCGATCTTACCATTAACTATA 60
|||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 31 ATGGCTCATCTCTTAAACCGCGTTAGATCTTCCTCTTCGTCGGTCTTCCCATTCACTATA 90
Query 61 ACATTCCTCG-TCATCTTCACCGGAAACTCACTCGCCGGAGAATTACGTCCTTCCGATCA 119
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 91 ACATTCCTCGCTC-TCTTCACCGGAAACTCACTGGCCGGAGAATTACGTCCTTCCGATCA 149
Query 120 TGGCTTACAGTACCAATTCAGCTCACCACCGACAGAATCTCACTCACCTCCGGGAAAAAT 179
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 150 TGGCTTACAGTATCAATTCAGCTCACCACCGACTGAATCTCACTCACCTCCGGGAAAAAT 209
Query 180 GAAGTCCTTCTTTGGAGATTCTCATTCTTCTTCTCCTCCTCCTTCTCACCCTCAGCTCCT 239
|||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 210 GAAGTCCTTCTTCGGAGATTCTCA---TTCTTCTCCTCCTCCTTCTCACTCTCAGCTCCT 266
Query 240 CCCTAAAGCCACGGCGGCAGACGGCGGAGACGACGATTCTTGGTGGCGAGATGGAGCTGG 299
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 267 TCCTAAAGCCACCGCGGCAGACGGCGGAGACGACGATTCTTGGTGGCGAGACGGGGCT-G 325
Query 300 GAT-CAGACGTGATCACGTGATGAGGCACGTGTTTCTTGCGGCGAGTATCATCTGCGGCG 358
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GTTACAGACGTGATCACGTGATGAGGCACGTGTTTCTTGCGGCGAGTATCATCTGCGGCG 385
Query 359 TCTCCGGCGTTGCGCTTCTGGTGGTTTTTACTTTGATTTACTTCTTTAGGTATCGTAAAC 418
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 386 TCTCCGGCGTTGCGCTTCTGGTGGTTTTTACTTTGATTTATTTCTTTAGGTATCGGAAAC 445
Query 419 ATAATCATTCGAACTCACCCACCGGTAACGATTCTAAAGAAATTATATTTTGATTATTG 477
|||| ||||||||||||||| ||||||||||| ||||||||| ||||||||| |||
Sbjct 446 ATAACCATTCGAACTCACCC---GGTAACGATTCAAAAGAAATTCGATTTTGATT-TTG 500
> Ahg354556 jgi|Araly1|354556|fgenesh1_pg.C_scaffold_7001729
Length=1515
Score = 542 bits (293), Expect = 1e-153
Identities = 370/407 (91%), Gaps = 6/407 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCATCTCTTAAACCGCGTTAGATCTTCCTGGTCGTCGATCTTACCATTAACTATA 60
||||||| | ||||||||||||||||| | || || |||||||| ||||| ||||||
Sbjct 1 ATGGCTCTTTTCTTAAACCGCGTTAGA---T-CT--TCATCGATCTTCCCATTCACTATA 54
Query 61 ACATTCCTCGTCATCTTCACCGGAAACTCACTCGCCGGAGAATTACGTCCTTCCGATCAT 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 55 ACATTCCTCGTTATCTTCACCGGCAACTCACTCGCCGGAGAATTACGTCCTTCAGATCAT 114
Query 121 GGCTTACAGTACCAATTCAGCTCACCACCGACAGAATCTCACTCACCTCCGGGAAAAATG 180
||| ||||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||||
Sbjct 115 GGCCTACAGTATCAATTCAGCTCACCACCGACTGAATCTAACTCACCACCGGGTAAAATG 174
Query 181 AAGTCCTTCTTTGGAGATTCTCATTCTTCTTCTCCTCCTCCTTCTCACCCTCAGCTCCTC 240
| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 175 ATGTCCTTCTTCGGAGATTCACATTCTTCTTCTCCTCCTCCTTCTCACTCTCAGCTCCTC 234
Query 241 CCTAAAGCCACGGCGGCAGACGGCGGAGACGACGATTCTTGGTGGCGAGATGGAGCTGGG 300
|||||||| |||||||||||||| |||||||| |||||||||||| |||| |||||||||
Sbjct 235 CCTAAAGCTACGGCGGCAGACGGTGGAGACGATGATTCTTGGTGGAGAGACGGAGCTGGG 294
Query 301 ATCAGACGTGATCACGTGATGAGGCACGTGTTTCTTGCGGCGAGTATCATCTGCGGCGTC 360
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 295 AACAGACGTGATCACGTGATGAGGCACGTTTTTCTTGCGGCGAGTATCATCTGTGGTGTC 354
Query 361 TCCGGCGTTGCGCTTCTGGTGGTTTTTACTTTGATTTACTTCTTTAG 407
||||| ||||||||||| || ||||||||||||||||| ||||||||
Sbjct 355 TCCGGTGTTGCGCTTCTTGTTGTTTTTACTTTGATTTATTTCTTTAG 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18505460665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5