BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21745.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492702 jgi|Araly1|492702|fgenesh2_kg.7__2135__AT4G21745.1 809 0.0
> Ahg492702 jgi|Araly1|492702|fgenesh2_kg.7__2135__AT4G21745.1
Length=805
Score = 809 bits (438), Expect = 0.0
Identities = 587/654 (90%), Gaps = 29/654 (4%)
Strand=Plus/Plus
Query 196 AGAGTTCCTCATATTAAAACCAACAAGCGAGAGTCTCTGTAATAATCTTCAGATAAGGAA 255
|||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 75 AGAGCTCCTCAGATTAAAACCAACAAGCGAGAGTCTCTATAATAATCTTCAGATAAGGAA 134
Query 256 TACTTCTTGTATTGAGCTTCTTACAAATATAAAACTTTCATTAACGTTTTGGAGTTGGCT 315
|||| ||||| |||||| | | | | | || ||||| |||||||| |||||
Sbjct 135 TACTGCTTGTGTTGAGC--C-T-C---T-T---AC---AATTAA--TTTTGGAGGTGGCT 178
Query 316 TCTGATCTTCTCCATCAACATTCAACAATGGCAATGAAGATGAAGGGAATATACAAAAGC 375
| ||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 179 TGTGATCTTCTAGATCAACATTCAACAATGGCAATGAAGATGAAGGGCATCTACAAAAGC 238
Query 376 TTCAAATCCATAATGT-TTGTTGGGAAAGAAAGAGATTTGGAAATTGGGCACCCAACAGA 434
||||||||||| | | | || ||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCAAATCCAT-CTCTCTAATTTCGAAAGAAAGAGATTTGGAAATTGGGCACCCAACAGA 297
Query 435 AGTAAAACATGTGGCCCATATTGGTTGGG-G--CTCCTCTGGCAGTGATCCTGGTTGGAT 491
||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||
Sbjct 298 AGTAAAACATGTGGCCCATATTGGTTGGGAGGGCTCCTCTGGCAGTGCTCCTGCTTGGAT 357
Query 492 GAGTGACTTTAAGGCAGGAGCAGAGTTTTTATCTCCAAGAACATCATCTTTCAGTCATAC 551
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 358 GAGTGACTTTAAGGCAGGAGCAGAGTTTTTATCTCCAAGAGCATCATCTTTCAGTCATGC 417
Query 552 AAGACATTCAGATTCTTTCTTCACCACTTCTGATTCCACTGAATTCGA---TCAGGAC-C 607
|||||||||||||||||||||||||||||| |||||||| || | | | ||| || |
Sbjct 418 AAGACATTCAGATTCTTTCTTCACCACTTCAGATTCCACCGA-T-CAAGGCTCA--ACTC 473
Query 608 AACTGAATATATCAGATAGGATAAGAGATGTGCCTCCTATACCAGTAGGTCTATCCAAGA 667
|||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 474 AACTAAATATATCGGATAGGATAAGAGATGTGCCTCCGATTCCAGTAGGTCTATCCAAGA 533
Query 668 TTCATACTAAGAGCAAGAATAGGAGAAAGAAACCATCTTCGACGTCATCACCAAGATCCA 727
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 534 TTCATACTAAAAGCAAGAATAGGAGAAAGAAACCATCTTCGACATCATCACCAAGATCCA 593
Query 728 GACCATCTCCAAAATCTTCGAGATCAATGGGTTTATCGAAGTCATCACATAAATCAATGG 787
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 594 GACCATCTCCAAAATCTTCGAGATCAATGGGTTTATCGAAATCATCGCATAAGTCAATGG 653
Query 788 TGTCTCGGTTAAACTCTAATGCATAATTAGAGTGAACTAAAAAGTACAATGAAT 841
| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 654 TATCTCGGTTACACTCTAATGCATAACTAGAGTGAACTAAAAAGTACCATGAAT 707
Score = 126 bits (68), Expect = 3e-28
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 95 TATGGTAAATTATATGTTTGCTTAGTGAGAACTTTATACGGAAATGCTTAGAGGCTTCTC 154
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 1 TATGGTAAATTATATGTTTGCTTAGTGAGAATTTTATACGCAAATGCTTTGAGGCTTCTC 60
Query 155 CATCAAATGAAAGAAGA 171
|||||||||||||||||
Sbjct 61 CATCAAATGAAAGAAGA 77
Score = 89.8 bits (48), Expect = 4e-17
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 942 ttt-ttttcCGTAGTTCTCATATATCGAAAAGTTCTATGTACATTGTAGAAAGACGTaaa 1000
||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 743 TTTGTTTT-CGTAGTTCTCATATTTCGGCAAGTTCTATGTACATTGTAGAAAGACGTAAA 801
Query 1001 aaaa 1004
||||
Sbjct 802 AAAA 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5