BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21760.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492699 jgi|Araly1|492699|fgenesh2_kg.7__2132__AT4G21760.1 1849 0.0
> Ahg492699 jgi|Araly1|492699|fgenesh2_kg.7__2132__AT4G21760.1
Length=1713
Score = 1849 bits (1001), Expect = 0.0
Identities = 1142/1210 (94%), Gaps = 9/1210 (1%)
Strand=Plus/Plus
Query 5 AAAAATCTATAGTTTATGAAATAATGGAGACTAAGTCATCAATGTACCTTTCTCAGTTCC 64
||||||||||||| | ||||||||||||||| || |||||||||||| |||||||||| |
Sbjct 1 AAAAATCTATAGTCTCTGAAATAATGGAGACCAAATCATCAATGTACATTTCTCAGTTTC 60
Query 65 GACTTTGG---CTCTGCTTCATCATCACAACCTTGGTCTCATTGTCATCTTCAACAAGAT 121
|||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 61 GACTTTGGCTCCTCTGCTTCATCATCATAACCTTGGTCTCATTGTCATCGTCATCAAGAT 120
Query 122 GGTATGATGATCATATCTCATTGA-AAGAGATTCACGCAGAAGAAACTTTCCATTTTCCA 180
|||||||||||||||||||||||| || ||||| |||||||||||| ||||||||| |||
Sbjct 121 GGTATGATGATCATATCTCATTGAGAA-AGATTAACGCAGAAGAAAATTTCCATTTCCCA 179
Query 181 AAAAACTTTCTCTTTGGCACAGCTTCTTCTGCTTACCAGTATGAAGGAGCTTACTTAACT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 AAAAACTTTCTCTTTGGCACAGCTTCTTCTGCTTACCAGTATGAAGGAGCTTACCTAACC 239
Query 241 GACGGCAAAACCCTAAGCAACTGGGACGTTTTCACAAACATCTCTGGAAAAATTGCGGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACGGCAAAACCCTAAGCAACTGGGACGTTTTCACAAACATCTCTGGAAAAATTGCGGAT 299
Query 301 GGAAGCCATGGGAAAGTCGCTGTTGATCATTACCATCGATATCCGGGAGATTTGGATCTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGAAGCCATGGGAAAGTCGCTGTTGATCATTACCATCGATATCCGGGAGATTTGGATCTC 359
Query 361 ATGGAAGATCTTGGAGTTAATAGCTATCGACTTTCTTTATCATGGGCTCGGATTCTTCCA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 ATGGAAGATCTTGGAGTTAATAGCTATCGACTTTCTTTGTCATGGGCTCGGATTCTTCCA 419
Query 421 AAGGGAAGATTTGGAGATGTGAACATGGGTGGTATCGATCATTACAACAGAATGATCAAT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGGGCAGATTTGGAGATGTGAACATGGGTGGTATCGATCATTACAACAGAATGATCAAT 479
Query 481 GATATTCTCAAAACAGGAATCGAGCCATTTGTCACGTTGACACATTACGACATTCCTCAA 540
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATATTCTCAAGAGAGGGATCGAGCCATTTGTCACGTTGACACATTACGACATTCCTCAA 539
Query 541 GAACTCGAATATAGATACGGAAGTTGGCTAAACCCCCAAATCCGGGAAGATTTCGAACAT 600
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GAACTCGAATCTAGATACGGAAGTTGGCTAAATCCCCAAATCCGGGAAGATTTCGAACAT 599
Query 601 TACGCAAATATTTGCTTCCGACACTTTGGAGACAGGGTTAAATTCTGGTCTACTTTCAAC 660
||||||||||||||||||||| ||||||| ||||| |||||||| ||| |||| ||||||
Sbjct 600 TACGCAAATATTTGCTTCCGATACTTTGGGGACAGAGTTAAATTTTGGGCTACGTTCAAC 659
Query 661 GAACCAAACGTTCAAGTGATTTTGGGTTACCGGACAGGAACTTACCCGCCTTCACGTTGT 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAACCAAACGTTCAAGTTATTTTGGGTTACCGGACAGGAACTTACCCGCCTTCACGTTGT 719
Query 721 TCCAAGCCTTTTGGAAACTGCTCGTGTGGCGATTCTTACATAGAGCCACTTGTAGCCGCT 780
||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 720 TCCAATACTTTTGGAAACTGCTCTTGTGGTGATTCTTACATAGAGCCACTCGTTGCCGCT 779
Query 781 CACAACATTATCCTTTCACATTTAGCCGCCGTCAAC-TTATACCGTACAAAATTTCAGGA 839
||||||||||| | ||||||| |||||||||| ||| |||||||| ||||||||||||||
Sbjct 780 CACAACATTATACGTTCACATGTAGCCGCCGT-AACCTTATACCGGACAAAATTTCAGGA 838
Query 840 ACAACAAAGAGGACAGATCGGTATTGTTATGAACACAATCTGGTTTGAACCGATTAGTGA 899
||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 839 ACAACAAAGTGGAAAGATCGGTATTGTTATGAACACGATCTGGTTTGAACCGGTTAGTGA 898
Query 900 TTCTTTAGCAGATAGATTAGCTGCTGACAGAGCTCAAGCTTTCTATTTGACTTGGTTCTT 959
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 899 TTCTTTAGCAGATAGATTAGCTGCTGAGAGAGCTCAAGCTTTCTACTTGACTTGGTTCTT 958
Query 960 GGATCCGGTTGTGTTTGGAAGATATCCAAGAGAAATGCGAGAAATTCTTGGCGATGATCT 1019
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 959 GGATCCAGTTGTGTTTGGAAGATATCCAAGAGAAATGCGAGAAATTCTCGGCGAAGATCT 1018
Query 1020 TCCTGAATTCACGAA-GGATGATCTTAAAAGCTCCAAGAATGCATTAGACTTCATTGGGA 1078
|||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 TCCTGAATTCAC-AACGGATGATCTTAAAAGCTCCAAGAACACATTAGACTTCATTGGGA 1077
Query 1079 TTAATCAGTACACAAGCAGATACGCGAAAGATTGTCTGCATTCCGTATGTGAACCGGGCA 1138
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||
Sbjct 1078 TTAATCAGTACACAAGCAGATACGCGGAAGATTGTCTGGATTCTGTATGTGAACCAGGCA 1137
Query 1139 AAGGAGGTTCGAGAGCTGAAGGTTTTGTCTATGCAAACGCCCTCAAAGACGGTTTACGTT 1198
|||||||||||||||| |||||||||||||||||||| || || ||||||||||||| ||
Sbjct 1138 AAGGAGGTTCGAGAGCAGAAGGTTTTGTCTATGCAAAAGCTCTTAAAGACGGTTTACCTT 1197
Query 1199 TAGGAGAACC 1208
||||||||||
Sbjct 1198 TAGGAGAACC 1207
Score = 721 bits (390), Expect = 0.0
Identities = 447/474 (94%), Gaps = 6/474 (1%)
Strand=Plus/Plus
Query 1212 AGGAATGGAGGAGATGTTGATGTATGCAACAGAGCGATACAAAAACATTACATTGTATGT 1271
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1241 AGGAATGGAGGAGATGTTGATGTATGCAACAAAGCGATACAAAAACATTCCATTGTATGT 1300
Query 1272 AACAGAAAACGGTTTTGGTGAGAACAATACCGGAGTATTGTTAAACGATTACCAGAGAGT 1331
|||||||||||||||||| ||||||||||||||||||||||||||||| || | |||| |
Sbjct 1301 AACAGAAAACGGTTTTGGCGAGAACAATACCGGAGTATTGTTAAACGACTATCGGAGATT 1360
Query 1332 GAAGTTCATGAGCAACTACTTAGATGCACTCAAAAGAGCAATGAGGAAAGGAGCAGATGT 1391
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GAAGTTCATGAGTAACTACTTAGATGCACTCAAAAGAGCAATGAGGAAAGGAGCAGATGT 1420
Query 1392 AAGAGGATACTTCGCCTGGTCTTTACTAGACAACTTCGAGTGGATATCCGGTTATACCAT 1451
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1421 AAGAGGATACTTCGCCTGGTCTTTACTAGACAACTTCGAGTGGATATCTGGTTATACCAT 1480
Query 1452 AAGGTTCGGTATGTACCATGTCGATTTCAGTACTCAAGAGAGAACCCCGAGACTGTCAGC 1511
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1481 AAGGTTCGGTATGTACCATGTCGATTTCAATACTCAAGAGAGAACCCCGAGACTATCAGC 1540
Query 1512 TTCTTGGTACAAAAACTTCATCTTCCAGCACAGAGCTCTATCAAAAGATGATTGGTGCCT 1571
|||||||||| |||||||||| ||||| |||||||||| ||| ||||||||||| |||||
Sbjct 1541 TTCTTGGTACGAAAACTTCATTTTCCAACACAGAGCTCAATCCAAAGATGATTGATGCCT 1600
Query 1572 GAAACAAAAGGAAGACACAAATTT----CTTTCTTATTTGATTCTTCCATTAAGTAGGAG 1627
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1601 GAAACAAAAGGAAGACACAAATTTATATCTTTCTTATTTGATTCTTCCATAAAGTAGGAG 1660
Query 1628 AGTAATGTAATAGTAAGCTGTTTTGTAGA-AATCAGTTCCAATAAACAAGACAT 1680
|||||||||| |||||||||||| || | ||||||||||||||||||||||||
Sbjct 1661 GGTAATGTAATTGTAAGCTGTTTTCTA-ATAATCAGTTCCAATAAACAAGACAT 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5