BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21770.1
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329436 jgi|Araly1|329436|fgenesh1_pm.C_scaffold_7001663 2239 0.0
Ahg492699 jgi|Araly1|492699|fgenesh2_kg.7__2132__AT4G21760.1 315 1e-84
> Ahg329436 jgi|Araly1|329436|fgenesh1_pm.C_scaffold_7001663
Length=1431
Score = 2239 bits (1212), Expect = 0.0
Identities = 1361/1432 (95%), Gaps = 14/1432 (1%)
Strand=Plus/Plus
Query 13 ATGGCTTCGCCGGCGTTAACCGGCGGTTACCGGAACCTCACTGCGCCGGTATCTCTCCTG 72
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCTTCGCCGGCGTTAACCGGCGGTTACCGGAACCTCACAGCGCCGGTATCTCTCCTG 60
Query 73 CGTACTTTAGCGTCCACCCGTGTCACTACTCCATTGTTTCGTTCCAAC-AA-A-C---AC 126
|| ||| |||| |||||| || ||||||| | || |||||| ||||| || | | ||
Sbjct 61 CGCACTCTAGCATCCACCTGTATCACTACGACTTTATTTCGTACCAACAAATATCAATAC 120
Query 127 ----T--CTCCACGTTTCATTTCTTCTCCAAAGAGATTCACTTGCTTGTCCTTACTCAAA 180
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAAATCCCTCCACGTTTCATTTCTTCTCCAAAGAGATTCACTTGCTTGTCCTTACTTAAA 180
Query 181 ACCGATTCTCAAAATCAAACCACACTCTCTTCTTCTTCCAATTCTGGATACCATGAATAC 240
||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 181 ACCGATTCTCAAAATCAAACCACACTCTCCTCTTCTTCCACTTCTGGATACCCTGAATAC 240
Query 241 AATCGATTGATGCCATGTCCTGCATATAATCTTCCACCAAGAATTGAACATATGGTTGTG 300
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 241 AATCGATTGATGCCATGTCCTGCACATAATCTTCCACCAAGAATTGAGCATATGGTTGTT 300
Query 301 TTAGAAGACGACGTTCTTGTATCTGAGTTTATCTCTAAACAATTAGATCTTCCTCCTTTA 360
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TTAGAAGACGACGTTCTTGTTTCTGAGTTTATCTCTAAAGAATTAGATCTTCCTCCTTTA 360
Query 361 TATGTTGCAGATCTTATTCGATTTGGAGCTGTACATTACGCTCTTGTATGTCCTAAACCT 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATGTTTCAGATCTTATTCGATTTGGAGCTGTACATTACGCTCTTGTATGTCCTAAACCT 420
Query 421 CCACCAACTGCGACTCCTGAGGAAATT-ATACTGTTTGAAGAAGTAACCTCTCCTTCTGT 479
||||||||||||||||||||| ||||| | ||| |||||||||||||||| |||||||||
Sbjct 421 CCACCAACTGCGACTCCTGAGCAAATTGA-ACTCTTTGAAGAAGTAACCTGTCCTTCTGT 479
Query 480 ACTAAAGAAGAGATCTTCTATTAAAGGAAAAACTGTTAGAGAAGCTCAGAAAACGTTTCG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTAAAGAAGAGATCTTCTATTAAAGGAAAAACTGTTAGAGAAGCTCAGAAAACGTTTCG 539
Query 540 TGTGACTCATACCAATCAGTATGCTGAAGCTGGAACTTATTTGCGTGTTCATGTTCACCC 599
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 540 TGTGACTCATACCAATCAGTATGCTGAAGCTGGGACTTATTTACGTGTTCATGTTCACCC 599
Query 600 GAAACGTTCTCCAAGGTGTTATGAAATTGATTGGAAGTCACGGATTGTTGCTGTGACTGA 659
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 600 GAAACGTTCTCCAAGGTGTTATGAAATCGATTGGAAGTCGCGGATTGTTGCTGTGACTGA 659
Query 660 CTCTTATGTCATTTTGGATAAACCTGCCGGGACTACGGTTGGGGGCACGACGGATAACAT 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 CTCTTATGTCATTTTGGATAAACCTGCCGGGACTACGGTTGGAGGCACGACGGATAACAT 719
Query 720 CGAAGAGAGCTGTGCTACATTTGCCTCACGTGCATTGGATTTACCAGAACCACTGAAAAC 779
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 720 CGAAGAGAGCTGTGCCACATTTGCCTCACGTGCATTGAATTTACCAGAACCGCTGAAAAC 779
Query 780 AACGCATCAGATTGATAACTGTACAGAAGGCTGTGTCGTCTTTGCTAGAACAAAAGAGTA 839
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 AACGCATCAGATTGATAACTGTACAGAAGGCTGTGTTGTCTTTGCTAGAACAAAAGAGTA 839
Query 840 CTGCTCGGTCTTCCACACAAAAATAAGAAATAAAGAAGTGAAGAAACTATATCGTGCTCT 899
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTGCTCGGTTTTCCACACGAAAATAAGAAATAAAGAAGTGAAGAAACTATATCGTGCTCT 899
Query 900 TGCTGCGGCACCTCTTCCCATTGGAATTATCTCACATTATATGCGCCCAAAAAATATGGC 959
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGCTGCGGCACCTCTTCCCACTGGAATTATCTCACATTATATGCGCCCAAAAAATATGGC 959
Query 960 TCCAAGACTCGTAGCCGAAGATTCAATTCAAGGCTGGCACTTGTGTCAACTTGAGGTTTT 1019
||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 960 TCCAAGACTCGTATCCGAAGATTCGATTAAAGGCTGGCACTTGTGTCAACTTGAGGTTTT 1019
Query 1020 AGAATGTAAGAAGATTCCTTGGCCCGATGCAGCTACTGAGAAGAAACACGATATTGAAGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAATGTAAGAAGATTCCTTGGCCCGATGCAGCTACTGAGAAGAAACACGATATTGAAGA 1079
Query 1080 CTGTGGATGGACTTCAAAAGAGTTTGCTTATGAGTGTACAATAAACCTTTTAACAGGCAA 1139
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1080 CTGTGGATGGACTTCAAAAGAATTTGCTTATGAGTGTACAATAAACCTCTTAACAGGCAA 1139
Query 1140 GACTCACCAGATCCGGGCCCAGCTTGCAGCTTGTGGGGCACCGTTGGTTGGTGACTCTAT 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 GACTCACCAGATCCGGGCCCAGCTTGCAGCTTGTGGGGCACCGTTGGTTGGTGATTCTAT 1199
Query 1200 GTACATGCCAGCAGCGATTGCAGAAATGGGGAATCCTGATACCAACCCGTATGGGAAAGC 1259
|||| ||||||||||||| |||||||||| ||||||||| | ||||| |||||||||| |
Sbjct 1200 GTACGTGCCAGCAGCGATAGCAGAAATGGTGAATCCTGAGATCAACCTGTATGGGAAATC 1259
Query 1260 AAAGAAACATTACACAATGGAGGAGAACCAAAAGGAAACCGCTGTTGCCGAATGGATTGA 1319
|||||||||||||||||||||||||||| | ||||| || |||||||| |||||||||||
Sbjct 1260 AAAGAAACATTACACAATGGAGGAGAACGATAAGGACACTGCTGTTGCTGAATGGATTGA 1319
Query 1320 TAGACATGGCAAGGAACCGAGGGTAGGAATCGGTCTTCAAGCTTGTCAAATCTCATGGGA 1379
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TAGGCATGGGAAGGAACCGAGGGTAGGAATCGGTCTTCAAGCTTGTCAAATCTCATGGGA 1379
Query 1380 CGATGATGATGGCGAGCACTTCTATGAAGCTGGGACTCCATGGTGGAGATGA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CGATGATGATGGCGAGCACTTCTATGAAGCTGGGACTCCATGGTGGAGATGA 1431
> Ahg492699 jgi|Araly1|492699|fgenesh2_kg.7__2132__AT4G21760.1
Length=1713
Score = 315 bits (170), Expect = 1e-84
Identities = 191/201 (95%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 1484 AGGCACCAATCATCTTTTGATAGAGCTCTGTGCTGGAAGATGAAGTTTTTGTACCAAGAA 1543
||||| ||||||||||| ||| |||||||||| ||||| |||||||||| ||||||||||
Sbjct 1600 AGGCATCAATCATCTTTGGATTGAGCTCTGTGTTGGAAAATGAAGTTTTCGTACCAAGAA 1541
Query 1544 GCTGACAGTCTCGGGGTTCTCTCTTGAGTACTGAAATCGACATGGTACATACCGAACCTT 1603
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1540 GCTGATAGTCTCGGGGTTCTCTCTTGAGTATTGAAATCGACATGGTACATACCGAACCTT 1481
Query 1604 ATGGTATAACCGGATATCCACTCGAAGTTGTCTAGTAAAGACCAGGCGAAGTATCCTCTT 1663
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 ATGGTATAACCAGATATCCACTCGAAGTTGTCTAGTAAAGACCAGGCGAAGTATCCTCTT 1421
Query 1664 ACATCTGCTCCTTTCCT-ATT 1683
||||||||||||||||| |||
Sbjct 1420 ACATCTGCTCCTTTCCTCATT 1400
Score = 82.4 bits (44), Expect = 1e-14
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 1752 CCTCATTGCTCTTTTGAGTGCATCTAAGTAGTTGCTCATGAACTTCA 1798
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1406 CCTCATTGCTCTTTTGAGTGCATCTAAGTAGTTACTCATGAACTTCA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67610184875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5