BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21780.1

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492697 jgi|Araly1|492697|fgenesh2_kg.7__2130__AT4G21780.1         556    5e-158


> Ahg492697 jgi|Araly1|492697|fgenesh2_kg.7__2130__AT4G21780.1
Length=469

 Score =  556 bits (301),  Expect = 5e-158
 Identities = 426/484 (88%), Gaps = 18/484 (4%)
 Strand=Plus/Plus

Query  84   ATGGCTGCTCCAATCGCCATAGGAACACGAGGAACCATCGGATCGCTTGTACGTAAAGAA  143
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGCTGCTCCAATCGCTATAGGAACACGAGGAACTATCGGATCGCTTGTACGTAAAGAA  60

Query  144  ATCGACTACTTCAAAAACTTCTCTACATGTCATCCCCAATTCGATCCACGGAGAGGCAAT  203
            ||||||||||||||||||||| ||||||||||||| || || |||||||||||||| |||
Sbjct  61   ATCGACTACTTCAAAAACTTCACTACATGTCATCCTCAGTTTGATCCACGGAGAGGTAAT  120

Query  204  TCGGAAGAAAACAAAAATACATTT-AA-ACA-AAGAGATCGGTCATCATCACGGTTGGGT  260
            || ||||||||||   | || ||| || | | |||||| |||||||||||| || |  ||
Sbjct  121  TCTGAAGAAAACACCGACACTTTTCAACAAAGAAGAGAACGGTCATCATCAAGGCTAAGT  180

Query  261  TCTTGGTTCTCTAAAACTAAATGGAGAAAGAAGAAGCGGCAGACTCGTGGTGGCGGTGGC  320
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct  181  TCTTGGTTCTCTAAAACTAATTGGAGAAAGAAGAAGCGGCAGACTCGTGGTGGCGCTGGC  240

Query  321  AAGTTTTTTCCGAGTATGTGCTCGGCGGTGGAGGTTTCCGGCGAGAATCGAGTTCCGGGT  380
            |||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct  241  AAGTTTTTGCCGAGTATGTGCGCGGCTGTGGAGGTTTCCGGTGAGAATCGAGTTCCGGGT  300

Query  381  TTCAACTATAGGATCTTGAAGAGTGATCATCAGAAGGGCTTGCGTGTGTAGAAAGGAGTC  440
            |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| 
Sbjct  301  TTCAACTATAGGATCTTGAAGAGTGATCATGAGAAGGGCTTGCGTGTGTAGAGAGTAGTA  360

Query  441  ATCATTTATGTGGATTACGGTAAAGACAATGAGATCTACATACAGTTTTTCAAATTTAAA  500
            || ||||||||||     | |||||||||||| |||| |||| | |||||||||||||||
Sbjct  361  ATTATTTATGTGG-----G-TAAAGACAATGAAATCTTCATAAACTTTTTCAAATTTAAA  414

Query  501  ATAATGTCTCATTGTGTTACATACTTACAAGTTACAATGTCAATGAGCATATATTCGAAC  560
             || ||| | | ||||||||||| |||||| |      ||||||| |||||| |||||||
Sbjct  415  TTA-TGTGTGAATGTGTTACATA-TTACAA-T------GTCAATGGGCATATTTTCGAAC  465

Query  561  TTTT  564
            ||||
Sbjct  466  TTTT  469



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20832951594


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5