BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21780.1 Length=570 Score E Sequences producing significant alignments: (Bits) Value Ahg492697 jgi|Araly1|492697|fgenesh2_kg.7__2130__AT4G21780.1 556 5e-158 > Ahg492697 jgi|Araly1|492697|fgenesh2_kg.7__2130__AT4G21780.1 Length=469 Score = 556 bits (301), Expect = 5e-158 Identities = 426/484 (88%), Gaps = 18/484 (4%) Strand=Plus/Plus Query 84 ATGGCTGCTCCAATCGCCATAGGAACACGAGGAACCATCGGATCGCTTGTACGTAAAGAA 143 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGCTGCTCCAATCGCTATAGGAACACGAGGAACTATCGGATCGCTTGTACGTAAAGAA 60 Query 144 ATCGACTACTTCAAAAACTTCTCTACATGTCATCCCCAATTCGATCCACGGAGAGGCAAT 203 ||||||||||||||||||||| ||||||||||||| || || |||||||||||||| ||| Sbjct 61 ATCGACTACTTCAAAAACTTCACTACATGTCATCCTCAGTTTGATCCACGGAGAGGTAAT 120 Query 204 TCGGAAGAAAACAAAAATACATTT-AA-ACA-AAGAGATCGGTCATCATCACGGTTGGGT 260 || |||||||||| | || ||| || | | |||||| |||||||||||| || | || Sbjct 121 TCTGAAGAAAACACCGACACTTTTCAACAAAGAAGAGAACGGTCATCATCAAGGCTAAGT 180 Query 261 TCTTGGTTCTCTAAAACTAAATGGAGAAAGAAGAAGCGGCAGACTCGTGGTGGCGGTGGC 320 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 181 TCTTGGTTCTCTAAAACTAATTGGAGAAAGAAGAAGCGGCAGACTCGTGGTGGCGCTGGC 240 Query 321 AAGTTTTTTCCGAGTATGTGCTCGGCGGTGGAGGTTTCCGGCGAGAATCGAGTTCCGGGT 380 |||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||| Sbjct 241 AAGTTTTTGCCGAGTATGTGCGCGGCTGTGGAGGTTTCCGGTGAGAATCGAGTTCCGGGT 300 Query 381 TTCAACTATAGGATCTTGAAGAGTGATCATCAGAAGGGCTTGCGTGTGTAGAAAGGAGTC 440 |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| Sbjct 301 TTCAACTATAGGATCTTGAAGAGTGATCATGAGAAGGGCTTGCGTGTGTAGAGAGTAGTA 360 Query 441 ATCATTTATGTGGATTACGGTAAAGACAATGAGATCTACATACAGTTTTTCAAATTTAAA 500 || |||||||||| | |||||||||||| |||| |||| | ||||||||||||||| Sbjct 361 ATTATTTATGTGG-----G-TAAAGACAATGAAATCTTCATAAACTTTTTCAAATTTAAA 414 Query 501 ATAATGTCTCATTGTGTTACATACTTACAAGTTACAATGTCAATGAGCATATATTCGAAC 560 || ||| | | ||||||||||| |||||| | ||||||| |||||| ||||||| Sbjct 415 TTA-TGTGTGAATGTGTTACATA-TTACAA-T------GTCAATGGGCATATTTTCGAAC 465 Query 561 TTTT 564 |||| Sbjct 466 TTTT 469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20832951594 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5