BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21790.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492696 jgi|Araly1|492696|fgenesh2_kg.7__2129__AT4G21790.1 1679 0.0
> Ahg492696 jgi|Araly1|492696|fgenesh2_kg.7__2129__AT4G21790.1
Length=1183
Score = 1679 bits (909), Expect = 0.0
Identities = 1086/1164 (93%), Gaps = 42/1164 (4%)
Strand=Plus/Plus
Query 147 CCTGGAGGAGAGAATGACGGATTCGGGTCTAATGATGCCGGCGGAGATTGCTGGAATTCT 206
||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || |
Sbjct 53 CCTGGAGGAGAGAATGAGGGATTCGGGTCTGATGATGCCGGCGGAGATTGCTGGATTTTT 112
Query 207 AACCACGGCGATTACGAGTTGGTGGGATGATGTTAATGAGTCAACTCAGTGGCAAGATGG 266
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 AACGACGGCGATTACGAGTTGGTGGGATGATGTTAATGAGTCAACTCAGTGGCAAGATGG 172
Query 267 GATCTTTTTCGCTCTTTGTGGTGCTTATGCTCTTGTTTCCGCCGTTGCTCTTGTTCAACT 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GATCTTTTTCGCTCTTTGTGGTGCTTATGCTCTTGTTTCCGCCGTTGCTCTTGTTCAACT 232
Query 327 GATAAGGATCCAAATGAGAGTGCCTGAGTATGGTTGGACTACTCAGAAGGTGTTTCATCT 386
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 233 GATAAGGATCCAAATGAGAGTGCCTGAGTATGGTTGGACCACTCAGAAGGTGTTTCATCT 292
Query 387 TATGAACTTTGTCGTCAATGGAGTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TATGAACTTTGTCGTCAATGGAGTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATT 352
Query 447 TCTTGTTCATCCCAAGGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTT 506
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 353 TCTTGTGCATCCCAAGGCTCTTTGCTGGGTACTATTGGATCTTCCAGGCCTTCTCTTTTT 412
Query 507 CTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGGCTAGAAGCTT 566
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 413 CTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGGCAAGAAGCTT 472
Query 567 ACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCA 626
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 473 GCCAACGGATAAGCTGCGGATAACCTATATTTCCGTCAACGTGGCTGTATATTTGGCTCA 532
Query 627 GATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTAGTTGGAAA 686
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 533 GATTGGTATCTGGGCATACATCTGGGTAAATGATAACAGCACTGTGGAGTTAGTTGGAAA 592
Query 687 GATATTTATCGCAGTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG 746
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 593 GATATTTATCGCAGTTGTATCTTTCATCGCCGCATTAGGCTTCTTGCTGTACGGAGGAAG 652
Query 747 ATTGTTTTTCATGCTAAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCA 806
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 653 GTTGTTTTTCATGCTTAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGAAAGAAACTCCA 712
Query 807 CGAGGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTGTGGT 866
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 713 CGAGGTTGGATCTGTGACAGCGATATGCTTCACCTGCTTTCTCATAAGATGCGTTGTGGT 772
Query 867 GGCTGTATCAGCTTTTGACAAGGATTTAACACTTGATGTTCTTGATCATCCGGTTCTGAA 926
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 773 GGCTGTATCAGCTTTTGACAAGGATTTAACGCTTGATGTTCTTGATCATCCGGTTCTGAA 832
Query 927 CTTAATCTACTATATGGTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCG 986
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 833 CTTAATCTACTATATGGTGGTTGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTGCG 892
Query 987 AAAGCTACCTCCAAAGAGAGTATCAGCTCAATACCATCCGATCCAGTAGAAACCTTTGTC 1046
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 893 TAAGCTACCTCCAAAGAGAGTATCAGCTCAATACCATCCGATCCAGTAGAAACGGT-G-- 949
Query 1047 ACTGAACCATCTCACACGGTGAGTATGATGCTGTTTAAGAGAAGAGTAAAGATTaaaaaa 1106
| | ||| | | | |||| | || ||||||||||| ||||| |||||
Sbjct 950 A--G-----TCT-----G---A-T--GATG-T-TT-AAGAGAAGAGTGAAGAT-AAAAA- 986
Query 1107 aaaaTTGGGGCAAAAAATGAAAGGTGAAGAAGAAATCGGTGTGGAA-T-------CTGCG 1158
||| |||| |||| ||||||||||||||||||||||||||| | |||||
Sbjct 987 ----TTGTGGCATTAAATCAAAGGTGAAGAAGAAATCGGTGTGGAAATGTGGAATCTGCG 1042
Query 1159 TGAGTTTTTGGAATGCACGTTCATATAAATGATTTTACAGCTTTTAGTTGTTGTAGCCCG 1218
||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||
Sbjct 1043 TGAGTTTTTGGAATGCACGATCATACAA-TGATTTTACAGCTTT-AGTTGTTGTAGCCCG 1100
Query 1219 CCGTGACTTTTGGTTTGGTAGTTTATGTCTGTTAAAATTATAAATTGCTCTTCTGCTACT 1278
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1101 CCGTGACTTTTGGTTTGGTAGTTTATGTCTGTTTAAATTATAAAT-GCTCTTCTTCTACT 1159
Query 1279 TTGAAAAA-TCTGGTCAGTAGTAC 1301
|||||||| |||||||||||||||
Sbjct 1160 TTGAAAAAATCTGGTCAGTAGTAC 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5