BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21810.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492693 jgi|Araly1|492693|fgenesh2_kg.7__2126__AT4G21810.1 1666 0.0
Ahg490119 jgi|Araly1|490119|fgenesh2_kg.6__3253__AT4G04860.1 785 0.0
> Ahg492693 jgi|Araly1|492693|fgenesh2_kg.7__2126__AT4G21810.1
Length=1138
Score = 1666 bits (902), Expect = 0.0
Identities = 1080/1159 (93%), Gaps = 39/1159 (3%)
Strand=Plus/Plus
Query 1 GTTAATTCAAAGCTTTAACGTAGAAGAAGCTGATTTAAATCCCAAATTCATTTCAACGTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTAATTCAAAGCTTTAACGTAGAAGAAGCTGATTTAAATCCCAAATTCATTTCAACGTA 60
Query 61 GAAGCTTCTACAGATTCGATTTGGGTG----T-TTTTGGTTTTGG-ATTTGGTAAAGCTT 114
||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||
Sbjct 61 GAAGCTTCTACAGATTCGATTAGGGTGATTTTGTTTTGGTTTTGGTTTTTGGTAAAGCTT 120
Query 115 CTCGGTCACTTGCTCGgtgattgaaactgaatcgattgtgattgtgattgtgattgtgat 174
||| |||||||||||||||||||||||| |||||||||||||||||| | | | | |
Sbjct 121 CTCCGTCACTTGCTCGGTGATTGAAACTAAATCGATTGTGATTGTGA--G-G--T-T-A- 172
Query 175 tgtgattgtgaGGGAATTATGGCTCAAGCCGTAGAAGAGTGGTACAAGCAGATGCCGATT 234
|| || |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 173 ---GA----GAAGGAATTATGGCTCAAGCCGTAGAAGAATGGTATAAGCAGATGCCGATT 225
Query 235 ATAACCCGGTCGTATCTCACGGCGGCTGTAGTCACCACCGTCGGGTGTTCGCTCGAGATT 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 226 ATAACCCGGTCGTATCTCACGGCGGCTGTAGTCACCACCGTCGGATGTTCGCTCGAGATT 285
Query 295 ATATCTCCTTATAATCTCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGTTCTGG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ATATCTCCTTATAATCTCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGTTCTGG 345
Query 355 CGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATG 414
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CGTCTTGTTACAAATTTCCTTTATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATG 405
Query 415 TTTTTTCTAGCTCGATACTGCAAACTGCTCGAAGAAAACTCCTTCAGGGGAAAGACCGCG 474
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 406 TTTTTTCTAGCTCGATACTGCAAACTACTCGAAGAAAACTCCTTCAGGGGAAAGACTGCG 465
Query 475 GATTTCCTTTACATGCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCATTGGC 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 466 GATTTCCTTTACATGCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCATCGGC 525
Query 535 GGAATGATACCTTATTTGTCTGTTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTG 594
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 526 GGAATGATACCTTATTTGTCAGTGTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTG 585
Query 595 ACTTTCATGATGGTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTTTCCTT 654
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 586 ACTTTCATGATGGTCTATGTATGGAGTAAACAAAATCCTTACATCCATATGAGTTTCCTT 645
Query 655 GGCCTCTTCACTTTCACAGCAGCTTATTTACCATGGGTACTTCTTGGATTCTCTATCCTT 714
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 646 GGCCTTTTCACTTTCACAGCAGCGTATTTACCATGGGTACTTCTTGGGTTCTCAATCCTT 705
Query 715 GTTGGTGCAAGTGCATGGGGGGATTTTCTGGGAATGATAGCGGGCCACGCATACTACTTC 774
|||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 706 GTTGGTGCAAGTGCTTGGGGAGATTTTCTGGGAATGATAGCGGGTCATGCATACTACTTC 765
Query 775 TTGGCATTTGTGTATCCCCGAATGACGGATCGACGTCCCTTGAAAACTCCATCTTTCCTC 834
|| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 766 TTAGCGTTTGTGTATCCACGAATGACGGATCGACGTCCCTTGAAGACTCCATCTTTCCTC 825
Query 835 AAGGCCCTATTTGCTGATGAGCCAGTCGTGATTGCAAGGCCAGAAGATGTGAGATTTGCT 894
|| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 826 AAAGCCCTATTTGCTGATGAGCCAGTCGTGATTGCACGGCCAGAAGATGTGAGGTTTGCT 885
Query 895 CATGCGCCTTTTGATGAAATCCACCAAGACTGAATCTTGATCCTCCACAAAACACCAGCC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 CATGCGCCTTTTGATGAAATCCACCAAGACTGAATCTTGATCCTCCACAAAACACCAGCC 945
Query 955 ACAACGCACAGTTCAAGTGTACTCAGATAATGTTA--------T---T-GACTCTTGACC 1002
||| | ||||||| ||||||| ||||||||||||| | | |||||||||||
Sbjct 946 ACA-CTCACAGTTGAAGTGTATTCAGATAATGTTAAAAGGGCATCCATCGACTCTTGACC 1004
Query 1003 TTTATAGTTGTGGATAATGTGGAAGTGAGATAGTGTTGGCTCTGAtttttttCCCTAGTT 1062
||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 1005 TTTATAGTTGTGGATAATGTGGAAGTGAGATGGTGTTGGGTCTGATTTTTT-CCCTAGTT 1063
Query 1063 TTCTGTCTGCTTTTCTTGTCCGATACAAATGTGTTTCCTCCTTGTGCATATGAACTCAAA 1122
|||||| || ||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct 1064 TTCTGTTTGATTTTCTTGTCCGATACAGCT-TGA--C-TCCTTGTGCATATGAACTCAAA 1119
Query 1123 TTGTGTACAAAGTCTTCAA 1141
|||||||||||||||||||
Sbjct 1120 TTGTGTACAAAGTCTTCAA 1138
> Ahg490119 jgi|Araly1|490119|fgenesh2_kg.6__3253__AT4G04860.1
Length=1189
Score = 785 bits (425), Expect = 0.0
Identities = 645/750 (86%), Gaps = 20/750 (3%)
Strand=Plus/Plus
Query 192 TATGGCTCAAGCCGTAGAAGAGTGGTACAAGCAGATGCCGATTATAACCCGGTCGTATCT 251
||||||||| || |||||||| ||||| || |||||||||||||| || || || |||||
Sbjct 247 TATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGATTATCACTCGCTCATATCT 306
Query 252 CACGGCGGCTG-TAGTCACCACCGTCGGGTGTTCGCTCGAGATTATATCTCCTTATAATC 310
||||||||||| || ||||||||||||| ||||| ||||| ||||||||||| ||||| |
Sbjct 307 CACGGCGGCTGTTA-TCACCACCGTCGGATGTTCCCTCGATATTATATCTCCCTATAACC 365
Query 311 TCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGT-TCTGGCGTCTTGTCACAAAT 369
|||| | ||||| ||||||||||||||||||||||| | | |||||||| || ||||||
Sbjct 366 TCTATTTGAATCCGACCCTTGTGGTGAAGCAATACCAATAT-TGGCGTCTCGTTACAAAT 424
Query 370 TTCCTT-TATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCG 428
|| ||| |||||||| ||||||||||||||||| ||||||||||||| ||||| || ||
Sbjct 425 TT-CTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATATGTTCTTTCTCGCACG 483
Query 429 ATACTGCAAACTGCTCGAAGAAAACTCCTTCAGGGGAAAGACCGCGGATTTCCTTTACAT 488
|||||||||||| || ||||||||||| |||||||||||||| || |||||||| |||||
Sbjct 484 ATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTGCTGATTTCCTATACAT 543
Query 489 GCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCA-TTGGCGGAATGATACCTT 547
|||| |||| || || |||||||||| ||||||||||| | | || ||||||||||| |
Sbjct 544 GCTCCTATTTGGAGCTTCTGTTCTAACCGGTATTGTTCT-ACTCGGTGGAATGATACCGT 602
Query 548 ATTTGTCTGTTTCATTCT-CCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATG 606
| ||||||| ||||| | | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 603 ACTTGTCTGCATCATT-TGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATG 661
Query 607 GTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTTTCCTTGGCCTCTTCACT 666
|||||||||||||| |||||||||||||| || ||||||||||||||||| || |||||
Sbjct 662 GTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTCCTTGGTCTGTTCACC 721
Query 667 TTCACAGCAGCTTATTTACCATGGGTACTTCTTGGATTCTCTATCCTTGTTGGTGCAAGT 726
|||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 722 TTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATCCTTGTTGGTGCCAGT 781
Query 727 GCATGGGGGGAT-TTTCTGGGAATGATAGCGGGCCACGCATACTAC-TTCTTGGCAT-TT 783
|| |||| |||| ||| |||| |||||||| || ||||| |||||| ||| |||| |
Sbjct 782 GCTTGGGTGGATCTTT-TGGGTATGATAGCAGGTCACGCGTACTACTTTC-TGGC-TGAG 838
Query 784 GTGTATCCCCGAATGACGGATCGACGTCCCTTGAAA-ACTCCATCTTTCCTCAAGGCCCT 842
|| ||||| |||||||| |||| | | |||| ||| |||||||| |||||||| |||||
Sbjct 839 GTCTATCCACGAATGACTAATCGTCAT-CCTTTAAAGACTCCATCGTTCCTCAAAGCCCT 897
Query 843 ATTTGCTGATGAGCCAGTCGTGATTGCAAGGCCAGAAGATGTGAGATTTGCT-CATGCGC 901
|||||| ||||| ||||| ||| ||||| |||||||| | ||||| |||||| | |||||
Sbjct 898 ATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAAACGTGAGGTTTGCTGC-TGCGC 956
Query 902 CTTTTGATGAAATCCACCAAGACTGAATCT 931
|||||||||||||||||||||||||| |||
Sbjct 957 CTTTTGATGAAATCCACCAAGACTGAGTCT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5