BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21820.1
Length=3984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492692 jgi|Araly1|492692|fgenesh2_kg.7__2125__AT4G21820.1 1991 0.0
> Ahg492692 jgi|Araly1|492692|fgenesh2_kg.7__2125__AT4G21820.1
Length=3634
Score = 1991 bits (1078), Expect = 0.0
Identities = 1248/1326 (94%), Gaps = 28/1326 (2%)
Strand=Plus/Plus
Query 1411 GAAAATGGTAGTTCCATCCGACAATCGAAAGAAGAACTTGGCCAATTGTAGAATTGCACT 1470
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1389 GAAAATGGTAGTTCCATCCGACAATCGAAAGAAGAACTTGGTCAATTGTAGAATTGCACT 1448
Query 1471 TCAATATCTTAAGGATGCTGGTGTTTCGTTAAAAGATGACGAAGGAATGATGATAACTGG 1530
||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1449 TCAATATCTGAAGGATGCTGGAGTTTCGTTAAAAGATGATGAGGGAATGATGATAACTGG 1508
Query 1531 GGAAGATGTTGCAGATGGTGACAGAGAGCTCACTATTTCACTACTATGGAACATTTTTGT 1590
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1509 GGAAGATGTTGCAGATGGTGACAGAGAGCTCACTATTTCACTGCTATGGAACATTTTTGT 1568
Query 1591 ACATTTGCAGCTGCCTCTTCTGATTAATGGGAGACTCTTGACAGAGGAAATCTACAAAGT 1650
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1569 ACATTTGCAGCTGCCTCTTCTGATCAATGGGAGACTCTTGACGGAGGAAATCTACAAAGT 1628
Query 1651 CCAGGGAG-TGGAACAGAATAATCAAATTACCATGTCTA---CTCCTCTGGAAATGCTCT 1706
|||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1629 CCAGGG-GCTGGAACAGAATAATCAAATTACCATGTCTACTCCTCCTCTGGAAATGCTCT 1687
Query 1707 TGAACTGGATCCAGGATCCTGGTGGTCAAGAAGGCCCTCAATCAGTAATGTCCAATACCG 1766
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1688 TGAACTGGATCCAGGATTCTGGTGGTGAACAAGGCCCTCAATCAGTAATGTCCAATACCG 1747
Query 1767 ATTACCATGATGCAGTTCAAAATTTTATTCTGTCGCAAAAGTTGACAGCACTTTTGGGAA 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 ATTACCATGATGCAGTTCAAAATTTTATTCTGTCGCAAAAGTTGACAGCACTTTTGGGAA 1807
Query 1827 GCTTTCCTGAGATTGGTGACTTACTGGAACATAATGCAGTAGTTAGCAACCAAAGTGTGA 1886
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 GTTTTCCTGAGATTGGTGACTTACTGGAACATAATGCAGTAGTTAGCAACCAAAGTGTGA 1867
Query 1887 TTATACTGTTGGCTTTCCTATCATCAAAGCTGATCGTCAAGGAGAATTTGTTAGATTTTA 1946
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1868 TTATACTGTTGGCTTTCCTATCATCAAAGCTGATCGTCAAGGAGAATTTG---G------ 1918
Query 1947 CATTGGCAGGTTATCTTACAAATTCCGTCTTTTCTCAGGAGCAACTGAATTTTCATAAGT 2006
| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1919 ---T---AGGTTATCTTACAAATTCCGTCTTTTCTCAGGAGAAACTGAACTTTCATAAGT 1972
Query 2007 TGCTGTGCTCTAGCTGTCAAGTTCAGGAGAAGAGATATTCGCGCATCAGAATCAGTTGCA 2066
||||||||||||||||||||| ||||||||||||||||| || | | ||||||||||
Sbjct 1973 TGCTGTGCTCTAGCTGTCAAGCTCAGGAGAAGAGATATT----CA-C-GCATCAGTTGCA 2026
Query 2067 GCAGCTCTGAAGCAGTTAC-AATCGAGGAACCAGACAGAGAAAATGGAGAAGATGCTACT 2125
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||
Sbjct 2027 GCAGCTCTGAAGCAGTTACAAAT-GAGGAACCGGACAGAGAAAATGGAGAAGATACTACG 2085
Query 2126 AAAAGGTTCCAGGCAATCAAAGCCTGGTGGCAGGACATGGCCAACCAAAATCAAATTTCT 2185
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2086 AAAAGTTTCCAGGCAATCAAAGCCTGGTGGCAGGACATGGCCAACCAAAACCAAAATTCT 2145
Query 2186 GTTGGAAAAGCTAATAGCCATACTCTGCAAGGCTCCTTGTCTAGAAAATGCACCACGGAT 2245
||||||||||||| || | ||||||||||| ||||||||||||| ||||||| || |||
Sbjct 2146 GTTGGAAAAGCTAGTAACGATACTCTGCAAAGCTCCTTGTCTAGCGAATGCACTACAGAT 2205
Query 2246 TCCCAACGAGCATACCTCTTACTTGCAGAAATTGCAGCAGTGATCATACAATCGAATATT 2305
|||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| ||||||
Sbjct 2206 TCCCAACGAGCATACCTCTTGCTTACAGAAATTGCAGCTGTGGTCATACAATCAAATATT 2265
Query 2306 AGGGGACTTCATGCACGCCGCAAGTTTAGAAATAAGATGAGAGCAATCTGCTTCTTACAA 2365
| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2266 AAGGGACTTGATGCACGACGCAAGTTTAGAAAGAAGATGAGAGCAATCTGCTTCTTACAA 2325
Query 2366 GCTGCTGTTCGGACATGGTTATCAGTGAAAAATATACAAGTTGTTGAGAAATTCAATGTT 2425
||| |||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||
Sbjct 2326 GCTTCTGTTCGGACATGGTTGTCAGTGAAAAATATACAAGTTCTTGAGAAGTTAAATGTT 2385
Query 2426 GAGGAAGTTACTTTACATTTATCTGAAAGATCGGCCAACTTAAAACCTGTAGCTAGATAT 2485
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2386 GAGGAAGTTACTTTACATCTATCAGAAAGATCGGCCAACTTAAAACCTGTAGCTAGATAT 2445
Query 2486 GTCAAGTTCATTGTTGATCGAAGTCGTTTCATCAAGTTGAGGAAATCTGTTTCCGTCATT 2545
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2446 GTCAAGTTCATTGTTGAACGAAGTCGTTTCATCAAGTTGAGGAAATCTGTTTCCGTCATT 2505
Query 2546 CAGAAAGCTGTAAGGAGACATCAGAGCAACCTTCATCATGAGCTGAAAGCAGCACTCAGA 2605
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2506 CAGAAAGCTGTAAGGAGACATCAGAGCAACCTTCATCATGAGCTGAAAGCAGCACTCAAA 2565
Query 2606 ATTCAACTAGCTTGGAGGAGTTATAAAGAAAAAGTTATCTCTTCTATCACCATCCAATCT 2665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2566 ATTCAACTAGCTTGGAGGAGTTATAAAGAAAAAGTTATCTCTTCTATCACCATCCAATCT 2625
Query 2666 TATGTTCGTGGATGGATCACACGCAGAATGAATCGGACATACAAGTTTTCTTCCATACTT 2725
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2626 TATGTTCGTGGATGGATCACACGCAGAACGAATTGGACATACAAGTTTTCTTCCATACTT 2685
Query 2726 ATTCAA 2731
||||||
Sbjct 2686 ATTCAA 2691
Score = 1868 bits (1011), Expect = 0.0
Identities = 1148/1215 (94%), Gaps = 6/1215 (0%)
Strand=Plus/Plus
Query 1 GAACAAACGACTC-TT-TCTCTCTAACAAATCTCCGATGGATGAAAACGAACCGCCGTGC 58
||||||||||||| || |||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 1 GAACAAACGACTCTTTCTCTCTCTAACGAATCTCTGATGGATGAAAATGAACCGCCGTGC 60
Query 59 GCTTCACCGGCGCCGCCACGTAATCCGGCGTCATCGTTACTCAGTGACATATCCAATTTC 118
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 61 GTTTCACCGGCGCCGCCACGTAATCTTACGTCATTGTTACTCAGTGACATATCCAATTTC 120
Query 119 AAAACGCCGCGGCGTACTTCCGTTGTGAATTCGAATATT-AGTAAATCTCCGTATCCGCA 177
||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 121 AAAACGCCGCGGCGTTCTTCAGTTGTGAATTCGAAT-TTCAGTAAATCTCCGTATCCGCA 179
Query 178 TTTCTTCACTGCATCAAAGCAAACCCCAAAATCTTCGTCTTCTAATTTCCGTCGTCCTTC 237
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 180 GTTCTTCACTGCATCAAAGCAAACCCCAAAACCTTCGTCTTCTAACTTCCGTCGTCCTTC 239
Query 238 AATGGTTCATTCTTATGCATCTCGGTCTAAGGTATCAACATCGTCGAGGCGGCTCAAAGC 297
||||||| ||||||| |||||||||||||||| ||||| || ||||||||||| |||||
Sbjct 240 CATGGTTCCTTCTTATACATCTCGGTCTAAGGTCTCAACTTCTTCGAGGCGGCTTAAAGC 299
Query 298 ATTTGAACTTCAGCAATCTCAATCTTCACGCAAGGCTGAGTTGACGAAAGAGAAGAATCT 357
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTTGAACTTCAGCAATCGCAATCTTCACGCAAGGCTGAGTTGACGAAAGAGAAGAATCT 359
Query 358 TAGATCTCTTGCTAAATCACTTACTGTGTGGCTCAATTT-CTTGTTTGAAAACCCGGAAA 416
||||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||
Sbjct 360 TAGATCTCTTGCTAAATCACTTACTGTGTGGCTCAATTTTCTC-TTTGAAAACCCCGTAA 418
Query 417 ATTGCGGTTGCGATCCGTTCGAGAACGAGTCTGGTGTTGGGAATTTAGGTAAGGGGAAGA 476
| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 419 ACTGCGGTTGTGATCCGTTCGAGAATGACTCTGGTGTTGGGAATTTAGGTAAGGGGAAGA 478
Query 477 GAGATAGTGGTGAGGCTTTAGGAAATAGTAAATCTGTTGGAGTTGATACAATGTGGAGAA 536
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 GAGATAGTGGTGAGGCTTTAGGAAATAGTAAATCTGTGGGAGTTGATACAATGTGGAGAA 538
Query 537 GCCCTAAAAGGTTGAGGAATTTAGGTTGGTGTGGTGAGAAAAAACGTTCAGAGATTGACT 596
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 539 GCCCCAAAAGGTTGAGGAATTTAGGTTGGTGTGGTGAGAAAAAAGGTTCAGAGATTGGCT 598
Query 597 CTTCCTTGACTGGTTCTAAGTATTCTACGTTGAGAGAATCTTTAAGAGATGTGTGTAGTT 656
|||||||||||||| |||||||||| ||| |||| || ||||||||||||||||||||||
Sbjct 599 CTTCCTTGACTGGTGCTAAGTATTCCACGCTGAGGGAGTCTTTAAGAGATGTGTGTAGTT 658
Query 657 TAGATGATTTGAAGCAAAGAATGCAATTTCACTTGAGTTTGGGAAGTTGCAAGGAGATTT 716
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 TAGATGATTTGAAGCAAAGAATGCAATTTCACTTGAGTTTGGCAAGTTGCAAGGAGATTT 718
Query 717 TTGATGTGATGACTCGTGTTTCAAAGAATATAGATGAAGGGAGGATAAAAATGAAACCAC 776
||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 719 TTGATGTCATGACCCGTGTCACCAAGAATATAGATGAAGGGAGGATAAAAATGAAATCAC 778
Query 777 AATGCCCTCTTGTAACTGATTTTGGAATGAAGGAGAAGGCCATCAAGGCACTGATGAGCT 836
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 779 AATGCCCTCTTGTAACTGATTTTGGAATGAAGGAGAAGGCCATCAAGGCATTGATGTGCT 838
Query 837 ATAACCAAGTTTGGCTTCGTTTAGGGTTATATATCATCTTTGGTGGTGATTCCTTTTTGT 896
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 ATAACCAAGTTTGGCTTCGTTTAGGGTTATATATCATCTTTGGTGGTGATTCGTTTTTGT 898
Query 897 CTGATAGTGAAGTTAACTCAGATCAAGAAATGGCGTTCTTGAAGATGGTAATTAGTAAGC 956
|||| |||||||||||||| |||||||||||||| |||||||||||||| |||| |||||
Sbjct 899 CTGACAGTGAAGTTAACTCGGATCAAGAAATGGCATTCTTGAAGATGGTTATTAATAAGC 958
Query 957 AGTTCTTTTCCCACGATGGCCTTGCTAGATCTTATGTTTATAACAAGATGGTTGAGGGTT 1016
|||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 959 AGTTCTTTTCTCATGATGGCCTTGCTAGAGCTTATGCTTATAACAAGATGGTTGAGGGTT 1018
Query 1017 TATACAGACCAGGGTACTATGAAGCTCTTGGAAATGTGATTTTGAAGAGGATTCTGTTGC 1076
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 TATACAGACCAGGGTACTATGAAGCCCTTGGAAATGTGATTTTGAAGAGGATTCTGTTGC 1078
Query 1077 TGGTTCTTGTAATTGATAGAGCCAAATCTCAAAGCTGCCTTTCGCTCAAGTATGGGATTG 1136
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCGTTCTTGTAATTGATAGAGCTAAATCTCAAAGCTGCCTTTCGCTCAAGTATGGGATTG 1138
Query 1137 ATGGGATAGATGGTGGCTCACCCCTCATGTTCTCAGAGAAATCTAGTATAAAGTCTAGCC 1196
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 ATGGGATAGATGGTGGTTCACCCCTCATGTTCTCAGAAAAATCTAGTATAAAGTCTAGCC 1198
Query 1197 ACCAACTTATATGTG 1211
|||||||||||||||
Sbjct 1199 ACCAACTTATATGTG 1213
Score = 420 bits (227), Expect = 4e-116
Identities = 239/245 (98%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 3559 GAACAAAGAAGAAGCATATTTCATTGCATCAGATGTTCTGAAGAAAATATGCAGTAGCCA 3618
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3390 GAACAAAGAAGAAGCATATTTCATTGCATCAGATGTTCTGAAGAAGATATGCAGTAGCCA 3449
Query 3619 TAAAGGCGTAGAAGCAGTTCGAAAGCTTCCTGCACTGGTAAAACGGTTACACGTCTTAGT 3678
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3450 TAAAGGCGTAGAAGCAGTTCGAAAGCTTCCTGCACTGGTAAAACGGTTACACGCCTTAGT 3509
Query 3679 TGAGGAGCTAACTCGTAAGGCAAACATCGAGAAACGGAACGTTAAGGGACAGACTGGAAA 3738
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3510 TGAGGAGCTAACTCGTAAGGCAAACATCGAGAAACGGAACGTTAAGGGTCAGACTGGAAA 3569
Query 3739 AGAAAAGAGTGAGAGAAGATTAAAAGAAGCTATTGAGCTTGTTAAGCTTATAACCAGAAG 3798
|||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 3570 AGAAAAGAGTGAGAGAAGATTAAAAGAAGCTATTGAGCTTCTAAAGCTTATAACTAGAAG 3629
Query 3799 ATGAT 3803
|||||
Sbjct 3630 ATGAT 3634
Score = 377 bits (204), Expect = 3e-103
Identities = 223/232 (96%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 3328 TTTGGAATCGGCAACCAAATACTCTGACAAATGCTGTGAAGAGCTTGTGGCAGCTGGAGC 3387
||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3121 TTT-GAATCGGCAACAAAATACTCTGACAAATGCTGTGAAGAGATTGTGGCAGCTGGAGC 3179
Query 3388 TATAGAAAAGTTGCTAACATTGATCCGGTCTGCAAGCAGAAGCATCCCTGATCAACAAGT 3447
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3180 TATAGACAAGTTGCTAACATTGATCCGGTCTGCAAGCAGAAGCATCCCTGACCAACAAGT 3239
Query 3448 TTCAAAACATGCACTATCAACTTTGGGACATCTTGCTCGTTATCCACAAATGGCAGATGA 3507
||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 3240 TTCAAAACATGCATTATCAACTTTGGGACACCTTGCTCGTTATCCACATATGGCAGATGA 3299
Query 3508 GCTAATCAACACGAAAGGTTCCATTCAGACAATCTTCTGGGAACTACTCAGG 3559
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3300 GCTAATCGACACGAAAGGTTCCATTCAGACAATCTTCTGGGAACTACTCAGG 3351
Score = 324 bits (175), Expect = 4e-87
Identities = 177/178 (99%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 3139 TCAATCACACTGGAGAGGTTATCTCACACGCAAAGCATCAAAGGCTCAAGTTCTGGATCT 3198
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2727 TCAGTCACACTGGAGAGGTTATCTCACACGCAAAGCATCAAAGGCTCAAGTTCTGGATCT 2786
Query 3199 GAGAGTACGAATGCAAACTTCTGCAGCAAACATAGATGACAAGAAACGGTTGATAAACAA 3258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2787 GAGAGTACGAATGCAAACTTCTGCAGCAAACATAGATGACAAGAAACGGTTGATAAACAA 2846
Query 3259 GCTTCTTTCTGCGCTTTCGGAACTACTGAGCATGAAAAACGTCCACAACATTCTTCAC 3316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2847 GCTTCTTTCTGCGCTTTCGGAACTACTGAGCATGAAAAACGTCCACAACATTCTTCAC 2904
Score = 152 bits (82), Expect = 2e-35
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1211 GAATTATTGTCCTCTGATGTAATGCATGGAGAAGGGAATCTCCTAGCGCATCTAGTGATT 1270
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1273 GAATTATTGTCCTCTGATGTAATGCATGGAGAAGGGAATCTTCTAGCGCATCTAGTGATT 1332
Query 1271 ATAGGATACAAAATACCTTATCAGCAGT 1298
||||| ||||||||||||||||||||||
Sbjct 1333 ATAGGGTACAAAATACCTTATCAGCAGT 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150593816361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5